Explain why we ignore extra baseline files options

lib/analyze-action-post.js

@@ -124967,6 +124967,9 @@ async function getCodeQLForCmd(cmd, checkVersion) {
           "--extractor-include-aliases",
           ...extraArgs,
           ...getExtraOptionsFromEnv(["database", "init"], {
+            // Some user configs specify `--no-calculate-baseline` as an additional
+            // argument to `codeql database init`. Therefore ignore the baseline file
+            // options here to avoid specifying the same argument twice and erroring.
             ignoringOptions: ["--overwrite", ...baselineFilesOptions]
           })
         ],

lib/analyze-action.js

@@ -93067,6 +93067,9 @@ async function getCodeQLForCmd(cmd, checkVersion) {
           "--extractor-include-aliases",
           ...extraArgs,
           ...getExtraOptionsFromEnv(["database", "init"], {
+            // Some user configs specify `--no-calculate-baseline` as an additional
+            // argument to `codeql database init`. Therefore ignore the baseline file
+            // options here to avoid specifying the same argument twice and erroring.
             ignoringOptions: ["--overwrite", ...baselineFilesOptions]
           })
         ],

lib/autobuild-action.js

@@ -88167,6 +88167,9 @@ async function getCodeQLForCmd(cmd, checkVersion) {
           "--extractor-include-aliases",
           ...extraArgs,
           ...getExtraOptionsFromEnv(["database", "init"], {
+            // Some user configs specify `--no-calculate-baseline` as an additional
+            // argument to `codeql database init`. Therefore ignore the baseline file
+            // options here to avoid specifying the same argument twice and erroring.
             ignoringOptions: ["--overwrite", ...baselineFilesOptions]
           })
         ],

lib/init-action-post.js

@@ -129602,6 +129602,9 @@ async function getCodeQLForCmd(cmd, checkVersion) {
           "--extractor-include-aliases",
           ...extraArgs,
           ...getExtraOptionsFromEnv(["database", "init"], {
+            // Some user configs specify `--no-calculate-baseline` as an additional
+            // argument to `codeql database init`. Therefore ignore the baseline file
+            // options here to avoid specifying the same argument twice and erroring.
             ignoringOptions: ["--overwrite", ...baselineFilesOptions]
           })
         ],

lib/init-action.js

@@ -91417,6 +91417,9 @@ async function getCodeQLForCmd(cmd, checkVersion) {
           "--extractor-include-aliases",
           ...extraArgs,
           ...getExtraOptionsFromEnv(["database", "init"], {
+            // Some user configs specify `--no-calculate-baseline` as an additional
+            // argument to `codeql database init`. Therefore ignore the baseline file
+            // options here to avoid specifying the same argument twice and erroring.
             ignoringOptions: ["--overwrite", ...baselineFilesOptions]
           })
         ],

lib/resolve-environment-action.js

@@ -87860,6 +87860,9 @@ async function getCodeQLForCmd(cmd, checkVersion) {
           "--extractor-include-aliases",
           ...extraArgs,
           ...getExtraOptionsFromEnv(["database", "init"], {
+            // Some user configs specify `--no-calculate-baseline` as an additional
+            // argument to `codeql database init`. Therefore ignore the baseline file
+            // options here to avoid specifying the same argument twice and erroring.
             ignoringOptions: ["--overwrite", ...baselineFilesOptions]
           })
         ],

lib/setup-codeql-action.js

@@ -89169,6 +89169,9 @@ async function getCodeQLForCmd(cmd, checkVersion) {
           "--extractor-include-aliases",
           ...extraArgs,
           ...getExtraOptionsFromEnv(["database", "init"], {
+            // Some user configs specify `--no-calculate-baseline` as an additional
+            // argument to `codeql database init`. Therefore ignore the baseline file
+            // options here to avoid specifying the same argument twice and erroring.
             ignoringOptions: ["--overwrite", ...baselineFilesOptions]
           })
         ],

lib/upload-lib.js

@@ -91889,6 +91889,9 @@ async function getCodeQLForCmd(cmd, checkVersion) {
           "--extractor-include-aliases",
           ...extraArgs,
           ...getExtraOptionsFromEnv(["database", "init"], {
+            // Some user configs specify `--no-calculate-baseline` as an additional
+            // argument to `codeql database init`. Therefore ignore the baseline file
+            // options here to avoid specifying the same argument twice and erroring.
             ignoringOptions: ["--overwrite", ...baselineFilesOptions]
           })
         ],

lib/upload-sarif-action.js

@@ -92439,6 +92439,9 @@ async function getCodeQLForCmd(cmd, checkVersion) {
           "--extractor-include-aliases",
           ...extraArgs,
           ...getExtraOptionsFromEnv(["database", "init"], {
+            // Some user configs specify `--no-calculate-baseline` as an additional
+            // argument to `codeql database init`. Therefore ignore the baseline file
+            // options here to avoid specifying the same argument twice and erroring.
             ignoringOptions: ["--overwrite", ...baselineFilesOptions]
           })
         ],

src/codeql.ts

@@ -642,6 +642,9 @@ async function getCodeQLForCmd(
           "--extractor-include-aliases",
           ...extraArgs,
           ...getExtraOptionsFromEnv(["database", "init"], {
+            // Some user configs specify `--no-calculate-baseline` as an additional
+            // argument to `codeql database init`. Therefore ignore the baseline file
+            // options here to avoid specifying the same argument twice and erroring.
             ignoringOptions: ["--overwrite", ...baselineFilesOptions],
           }),
         ],