update wording of deprecation warning

Merge releases/v3 into releases/v2

.eslintignore

@@ -0,0 +1,4 @@
+**/webpack.config.js
+lib/**
+src/testdata/**
+tests/**

.eslintrc.json

@@ -0,0 +1,77 @@
+
+{
+    "parser": "@typescript-eslint/parser",
+    "parserOptions": {
+        "project": "./tsconfig.json"
+    },
+    "plugins": ["@typescript-eslint", "filenames", "github", "import", "no-async-foreach"],
+    "extends": [
+        "eslint:recommended",
+        "plugin:@typescript-eslint/recommended",
+        "plugin:@typescript-eslint/recommended-requiring-type-checking",
+        "plugin:github/recommended",
+        "plugin:github/typescript",
+        "plugin:import/typescript"
+    ],
+    "rules": {
+        "filenames/match-regex": ["error", "^[a-z0-9-]+(\\.test)?$"],
+        "i18n-text/no-en": "off",
+        "import/extensions": ["error", {
+            // Allow importing JSON files
+            "json": {}
+        }],
+        "import/no-amd": "error",
+        "import/no-commonjs": "error",
+        "import/no-cycle": "error",
+        "import/no-dynamic-require": "error",
+        // Disable the rule that checks that devDependencies aren't imported since we use a single
+        // linting configuration file for both source and test code.
+        "import/no-extraneous-dependencies": ["error", {"devDependencies": true}],
+        "import/no-namespace": "off",
+        "import/no-unresolved": "error",
+        "import/no-webpack-loader-syntax": "error",
+        "import/order": ["error", {
+            "alphabetize": {"order": "asc"},
+            "newlines-between": "always"
+        }],
+        "max-len": ["error", {
+            "code": 120,
+            "ignoreUrls": true,
+            "ignoreStrings": true,
+            "ignoreTemplateLiterals": true
+        }],
+        "no-async-foreach/no-async-foreach": "error",
+        "no-console": "off",
+        "no-sequences": "error",
+        "no-shadow": "off",
+        "@typescript-eslint/no-shadow": ["error"],
+        "one-var": ["error", "never"]
+    },
+    "overrides": [{
+        // "temporarily downgraded during transition to eslint
+        "files": "**",
+        "rules": {
+            "@typescript-eslint/ban-types": "off",
+            "@typescript-eslint/explicit-module-boundary-types": "off",
+            "@typescript-eslint/no-explicit-any": "off",
+            "@typescript-eslint/no-unsafe-assignment": "off",
+            "@typescript-eslint/no-unsafe-call": "off",
+            "@typescript-eslint/no-unsafe-member-access": "off",
+            "@typescript-eslint/no-unsafe-return": "off",
+            "@typescript-eslint/no-var-requires": "off",
+            "@typescript-eslint/prefer-regexp-exec": "off",
+            "@typescript-eslint/require-await": "off",
+            "@typescript-eslint/restrict-template-expressions": "off",
+            "func-style": "off",
+            "sort-imports": "off"
+        }
+    }],
+    "settings": {
+        "import/resolver": {
+            "node": {
+                "moduleDirectory": ["node_modules", "src"]
+            },
+            "typescript": {}
+        }
+    }
+}

.github/actions/check-codescanning-config/action.yml

@@ -29,16 +29,7 @@ inputs:
   tools:
     required: true
     description: |
-      The version of CodeQL passed to the `tools` input of the init action.
-      This can be any of the following:
-
-      - A local path to a tarball containing the CodeQL tools, or
-      - A URL to a GitHub release assets containing the CodeQL tools, or
-      - A special value `linked` which is forcing the use of the CodeQL tools
-        that the action has been bundled with.
-
-      If not specified, the Action will check in several places until it finds
-      the CodeQL tools.
+      The url of codeql to use.
 
 runs:
   using: composite
@@ -61,12 +52,11 @@ runs:
     - name: Check config
       working-directory: ${{ github.action_path }}
       shell: bash
-      env:
-        EXPECTED_CONFIG_FILE_CONTENTS: '${{ inputs.expected-config-file-contents }}'
-      run: ts-node ./index.ts "$RUNNER_TEMP/user-config.yaml" "$EXPECTED_CONFIG_FILE_CONTENTS"
+      run: ts-node ./index.ts "${{ runner.temp }}/user-config.yaml" '${{ inputs.expected-config-file-contents }}'
+
     - name: Clean up
       shell: bash
       if: always()
       run: |
-        rm -rf $RUNNER_TEMP/codescanning-config-cli-test
-        rm -rf $RUNNER_TEMP/user-config.yaml
+        rm -rf ${{ runner.temp }}/codescanning-config-cli-test
+        rm -rf ${{ runner.temp }}/user-config.yaml

.github/actions/check-codescanning-config/index.ts

@@ -6,19 +6,9 @@ import * as assert from 'assert'
 
 const actualConfig = loadActualConfig()
 
-function sortConfigArrays(config) {
-  for (const key of Object.keys(config)) {
-    const value = config[key];
-    if (key === 'queries' && Array.isArray(value)) {
-      config[key] = value.sort();
-    }
-  }
-  return config;
-}
-
 const rawExpectedConfig = process.argv[3].trim()
 if (!rawExpectedConfig) {
-  core.setFailed('No expected configuration provided')
+  core.info('No expected configuration provided')
 } else {
   core.startGroup('Expected generated user config')
   core.info(yaml.dump(JSON.parse(rawExpectedConfig)))
@@ -28,8 +18,8 @@ if (!rawExpectedConfig) {
 const expectedConfig = rawExpectedConfig ? JSON.parse(rawExpectedConfig) : undefined;
 
 assert.deepStrictEqual(
-  sortConfigArrays(actualConfig),
-  sortConfigArrays(expectedConfig),
+  actualConfig,
+  expectedConfig,
   'Expected configuration does not match actual configuration'
 );
 

.github/actions/check-sarif/action.yml

@@ -16,5 +16,5 @@ inputs:
       Comma separated list of query ids that should NOT be included in this SARIF file.
 
 runs:
-  using: node24
+  using: node16
   main: index.js

.github/actions/prepare-mergeback-branch/action.yml

@@ -1,105 +0,0 @@
-name: "Prepare mergeback branch"
-description: Prepares a mergeback branch and opens a PR for it
-inputs:
-  base:
-    description: "The name of the base branch"
-    required: true
-  head:
-    description: "The name of the head branch"
-    required: true
-  branch:
-    description: "The name of the branch to create."
-    required: true
-  version:
-    description: "The new version"
-    required: true
-  token:
-    description: "The token to use"
-    required: true
-  dry-run:
-    description: "Set to true to skip creating the PR. The branch will still be pushed."
-    default: "false"
-runs:
-  using: composite
-  steps:
-    - name: Create mergeback branch
-      shell: bash
-      env:
-        VERSION: "${{ inputs.version }}"
-        NEW_BRANCH: "${{ inputs.branch }}"
-      run: |
-        set -exu
-
-        # Ensure we are on the new branch
-        git checkout "${NEW_BRANCH}"
-
-        # Update the version number ready for the next release
-        npm version patch --no-git-tag-version
-
-        # Update the changelog, adding a new version heading directly above the most recent existing one
-        awk '!f && /##/{print "'"## [UNRELEASED]\n\nNo user facing changes.\n"'"; f=1}1' CHANGELOG.md > temp && mv temp CHANGELOG.md
-        git add .
-        git commit -m "Update changelog and version after ${VERSION}"
-
-    # Update the build artifacts with the new version number
-    - name: Rebuild the Action
-      shell: bash
-      run: |
-        set -exu
-        npm ci
-        npm run build
-
-    - name: Check for rebuild changes
-      id: rebuild_changes
-      shell: bash
-      run: |
-        set -exu
-        git add --all
-        if git diff --cached --quiet; then
-          echo "has_changes=false" >> "${GITHUB_OUTPUT}"
-        else
-          echo "has_changes=true" >> "${GITHUB_OUTPUT}"
-        fi
-
-    - name: Commit rebuild
-      if: steps.rebuild_changes.outputs.has_changes == 'true'
-      shell: bash
-      run: |
-        set -exu
-        git commit -m "Rebuild"
-
-    - name: Push mergeback branch
-      shell: bash
-      env:
-        NEW_BRANCH: "${{ inputs.branch }}"
-      run: git push origin "${NEW_BRANCH}"
-
-    - name: Create PR
-      shell: bash
-      if: inputs.dry-run != 'true'
-      env:
-        VERSION: "${{ inputs.version }}"
-        BASE_BRANCH: "${{ inputs.base }}"
-        HEAD_BRANCH: "${{ inputs.head }}"
-        NEW_BRANCH: "${{ inputs.branch }}"
-        GITHUB_TOKEN: "${{ inputs.token }}"
-      run: |
-        set -exu
-        pr_title="Mergeback ${VERSION} ${HEAD_BRANCH} into ${BASE_BRANCH}"
-        pr_body=$(cat << EOF
-          This PR bumps the version number and updates the changelog after the ${VERSION} release.
-
-          Please do the following:
-
-          - [ ] Approve running the full set of PR checks.
-          - [ ] Approve and merge the PR. When merging the PR, make sure "Create a merge commit" is
-                selected rather than "Squash and merge" or "Rebase and merge".
-        EOF
-        )
-
-        gh pr create \
-          --head "${NEW_BRANCH}" \
-          --base "${BASE_BRANCH}" \
-          --title "${pr_title}" \
-          --body "${pr_body}" \
-          --assignee "${GITHUB_ACTOR}"

.github/actions/prepare-test/action.yml

@@ -2,16 +2,12 @@ name: "Prepare test"
 description: Performs some preparation to run tests
 inputs:
   version:
-    description: "The version of the CodeQL CLI to use. Can be 'linked', 'default', 'toolcache', 'nightly', 'nightly-latest', 'nightly-YYYYMMDD', or 'stable-vX.Y.Z"
+    description: "The version of the CodeQL CLI to use. Can be 'latest', 'default', 'nightly-latest', 'nightly-YYYY-MM-DD', or 'stable-YYYY-MM-DD'."
     required: true
   use-all-platform-bundle:
     description: "If true, we output a tools URL with codeql-bundle.tar.gz file rather than platform-specific URL"
     default: 'false'
     required: false
-  setup-kotlin:
-    description: "If true, we setup kotlin"
-    default: 'true'
-    required: true
 outputs:
   tools-url:
     description: "The value that should be passed as the 'tools' input of the 'init' step."
@@ -29,27 +25,10 @@ runs:
     - id: get-url
       name: Determine URL
       shell: bash
-      env:
-        VERSION: ${{ inputs.version }}
-        USE_ALL_PLATFORM_BUNDLE: ${{ inputs.use-all-platform-bundle }}
       run: |
         set -e # Fail this Action if `gh release list` fails.
 
-        if [[ "$VERSION" == "nightly" || "$VERSION" == "nightly-latest" ]]; then
-          echo "tools-url=nightly" >> "$GITHUB_OUTPUT"
-          exit 0
-        elif [[ "$VERSION" == "linked" ]]; then
-          echo "tools-url=linked" >> "$GITHUB_OUTPUT"
-          exit 0
-        elif [[ "$VERSION" == "toolcache" ]]; then
-          echo "tools-url=toolcache" >> "$GITHUB_OUTPUT"
-          exit 0
-        elif [[ "$VERSION" == "default" ]]; then
-          echo "tools-url=" >> "$GITHUB_OUTPUT"
-          exit 0
-        fi
-
-        if [[ "$USE_ALL_PLATFORM_BUNDLE" == "true" ]]; then
+        if [[ ${{ inputs.use-all-platform-bundle }} == "true" ]]; then
           artifact_name="codeql-bundle.tar.gz"
         elif [[ "$RUNNER_OS" == "Linux" ]]; then
           artifact_name="codeql-bundle-linux64.tar.gz"
@@ -62,18 +41,20 @@ runs:
           exit 1
         fi
 
-        if [[ "$VERSION" == *"nightly"* ]]; then
-          version=`echo "$VERSION" | sed -e 's/^.*\-//'`
-          echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/codeql-bundle-$version/$artifact_name" >> $GITHUB_OUTPUT
-        elif [[ "$VERSION" == *"stable"* ]]; then
-          version=`echo "$VERSION" | sed -e 's/^.*\-//'`
+        if [[ ${{ inputs.version }} == "nightly-latest" ]]; then
+          tag=`gh release list --repo dsp-testing/codeql-cli-nightlies -L 1 | cut -f 3`
+          echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/$tag/$artifact_name" >> $GITHUB_OUTPUT
+        elif [[ ${{ inputs.version }} == *"nightly"* ]]; then
+          version=`echo ${{ inputs.version }} | sed -e 's/^.*\-//'`
+          echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/codeql-bundle-$version-manual/$artifact_name" >> $GITHUB_OUTPUT
+        elif [[ ${{ inputs.version }} == *"stable"* ]]; then
+          version=`echo ${{ inputs.version }} | sed -e 's/^.*\-//'`
           echo "tools-url=https://github.com/github/codeql-action/releases/download/codeql-bundle-$version/$artifact_name" >> $GITHUB_OUTPUT
+        elif [[ ${{ inputs.version }} == "latest" ]]; then
+          echo "tools-url=latest" >> $GITHUB_OUTPUT
+        elif [[ ${{ inputs.version }} == "default" ]]; then
+          echo "tools-url=" >> $GITHUB_OUTPUT
         else
           echo "::error::Unrecognized version specified!"
           exit 1
         fi
-
-    - uses: fwilhe2/setup-kotlin@9c245a6425255f5e98ba1ce6c15d31fce7eca9da
-      if: ${{ inputs.setup-kotlin == 'true' }}
-      with:
-        version: 1.8.21

.github/actions/query-filter-test/action.yml

@@ -23,16 +23,7 @@ inputs:
   tools:
     required: true
     description: |
-      The version of CodeQL passed to the `tools` input of the init action.
-      This can be any of the following:
-
-      - A local path to a tarball containing the CodeQL tools, or
-      - A URL to a GitHub release assets containing the CodeQL tools, or
-      - A special value `linked` which is forcing the use of the CodeQL tools
-        that the action has been bundled with.
-
-      If not specified, the Action will check in several places until it finds
-      the CodeQL tools.
+      The url of codeql to use.
 
 runs:
   using: composite
@@ -48,6 +39,7 @@ runs:
     - uses: ./../action/analyze
       with:
         output: ${{ runner.temp }}/results
+        upload-database: false
         upload: never
       env:
         CODEQL_ACTION_TEST_MODE: "true"

.github/actions/release-branches/action.yml

@@ -18,11 +18,8 @@ runs:
   using: "composite"
   steps:
     - id: branches
-      env:
-        MAJOR_VERSION: ${{ inputs.major_version }}
-        LATEST_TAG: ${{ inputs.latest_tag }}
       run: |
-        npx tsx ./pr-checks/release-branches.ts \
-            --major-version "$MAJOR_VERSION" \
-            --latest-tag "$LATEST_TAG"
+        python ${{ github.action_path }}/release-branches.py \
+            --major-version ${{ inputs.major_version }} \
+            --latest-tag ${{ inputs.latest_tag }}
       shell: bash

.github/actions/release-branches/release-branches.py

@@ -0,0 +1,55 @@
+import argparse
+import json
+import os
+import configparser
+
+# Name of the remote
+ORIGIN = 'origin'
+
+script_dir = os.path.dirname(os.path.realpath(__file__))
+grandparent_dir = os.path.dirname(os.path.dirname(script_dir))
+
+config = configparser.ConfigParser()
+with open(os.path.join(grandparent_dir, 'releases.ini')) as stream:
+    config.read_string('[default]\n' + stream.read())
+
+OLDEST_SUPPORTED_MAJOR_VERSION = int(config['default']['OLDEST_SUPPORTED_MAJOR_VERSION'])
+
+def main():
+
+  parser = argparse.ArgumentParser()
+  parser.add_argument("--major-version", required=True, type=str, help="The major version of the release")
+  parser.add_argument("--latest-tag", required=True, type=str, help="The most recent tag published to the repository")
+  args = parser.parse_args()
+
+  major_version = args.major_version
+  latest_tag = args.latest_tag
+
+  print("major_version: " + major_version)
+  print("latest_tag: " + latest_tag)
+
+  # If this is a primary release, we backport to all supported branches,
+  # so we check whether the major_version taken from the package.json
+  # is greater than or equal to the latest tag pulled from the repo.
+  # For example...
+  #     'v1' >= 'v2' is False # we're operating from an older release branch and should not backport
+  #     'v2' >= 'v2' is True  # the normal case where we're updating the current version
+  #     'v3' >= 'v2' is True  # in this case we are making the first release of a new major version
+  consider_backports = ( major_version >= latest_tag.split(".")[0] )
+
+  with open(os.environ["GITHUB_OUTPUT"], "a") as f:
+
+    f.write(f"backport_source_branch=releases/{major_version}\n")
+
+    backport_target_branches = []
+
+    if consider_backports:
+      for i in range(int(major_version.strip("v"))-1, 0, -1):
+        branch_name = f"releases/v{i}"
+        if i >= OLDEST_SUPPORTED_MAJOR_VERSION:
+          backport_target_branches.append(branch_name)
+
+    f.write("backport_target_branches="+json.dumps(backport_target_branches)+"\n")
+
+if __name__ == "__main__":
+  main()

.github/actions/release-initialise/action.yml

@@ -15,15 +15,16 @@ runs:
       run: echo "$GITHUB_CONTEXT"
       shell: bash
 
-    - name: Set up Node
-      uses: actions/setup-node@48b55a011bda9f5d6aeb4c2d9c7362e8dae4041e # v6.4.0
+    - name: Set up Python
+      uses: actions/setup-python@v5
       with:
-        node-version: 24
-        cache: 'npm'
+        python-version: 3.8
 
-    - name: Install JavaScript dependencies
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install PyGithub==1.55 requests
       shell: bash
-      run: npm ci
 
     - name: Update git config
       run: |

.github/actions/setup-swift/action.yml

@@ -0,0 +1,39 @@
+name: "Set up Swift on Linux"
+description: Sets up an appropriate Swift version on Linux.
+inputs:
+  codeql-path:
+    description: Path to the CodeQL CLI executable.
+    required: true
+runs:
+  using: "composite"
+  steps:
+    - name: Get Swift version
+      id: get_swift_version
+      if: runner.os == 'Linux'
+      shell: bash
+      env: 
+        CODEQL_PATH: ${{ inputs.codeql-path }}
+      run: |
+        SWIFT_EXTRACTOR_DIR="$("$CODEQL_PATH" resolve languages --format json | jq -r '.swift[0]')"
+        if [ $SWIFT_EXTRACTOR_DIR = "null" ]; then
+          VERSION="null"
+        else
+          VERSION="$("$SWIFT_EXTRACTOR_DIR/tools/linux64/extractor" --version | awk '/version/ { print $3 }')"
+          # Specify 5.x.0, otherwise setup Action will default to latest minor version. 
+          if [ $VERSION = "5.7" ]; then
+            VERSION="5.7.0"
+          elif [ $VERSION = "5.8" ]; then
+            VERSION="5.8.0"
+          elif [ $VERSION = "5.9" ]; then
+            VERSION="5.9.0"
+          # setup-swift does not yet support v5.9.1 Remove this when it does.
+          elif [ $VERSION = "5.9.1" ]; then
+            VERSION="5.9.0"
+          fi 
+        fi
+        echo "version=$VERSION" | tee -a $GITHUB_OUTPUT
+
+    - uses: swift-actions/setup-swift@cdbe0f7f4c77929b6580e71983e8606e55ffe7e4 # Please update the corresponding SHA in the CLI's CodeQL Action Integration Test.
+      if: runner.os == 'Linux' && steps.get_swift_version.outputs.version != 'null'
+      with:
+        swift-version: "${{ steps.get_swift_version.outputs.version }}"

.github/actions/verify-debug-artifact-scan-completed/action.yml

@@ -1,6 +0,0 @@
-name: Verify that the best-effort debug artifact scan completed
-description: Verifies that the best-effort debug artifact scan completed successfully during tests
-runs:
-  using: node24
-  main: index.js
-  post: post.js

.github/actions/verify-debug-artifact-scan-completed/index.js

@@ -1,2 +0,0 @@
-// The main step is a no-op, since we can only verify artifact scan completion in the post step.
-console.log("Will verify artifact scan completion in the post step.");

.github/actions/verify-debug-artifact-scan-completed/post.js

@@ -1,11 +0,0 @@
-// Post step - runs after the workflow completes, when artifact scan has finished
-const process = require("process");
-
-const scanFinished = process.env.CODEQL_ACTION_ARTIFACT_SCAN_FINISHED;
-
-if (scanFinished !== "true") {
-  console.error("Error: Best-effort artifact scan did not complete. Expected CODEQL_ACTION_ARTIFACT_SCAN_FINISHED=true");
-  process.exit(1);
-}
-
-console.log("✓ Best-effort artifact scan completed successfully");

.github/codeql/codeql-config-javascript.yml

@@ -1,17 +0,0 @@
-name: "CodeQL config"
-queries:
-  - name: Run custom queries
-    uses: ./queries
-  # Run all extra query suites, both because we want to
-  # and because it'll act as extra testing. This is why
-  # we include both even though one is a superset of the
-  # other, because we're testing the parsing logic and
-  # that the suites exist in the codeql bundle.
-  - uses: security-and-quality
-  - uses: security-experimental
-  - uses: security-extended
-paths-ignore:
-  - lib
-  - tests
-  - "**/*.test.ts"
-  - "**/testing-util.ts"

.github/codeql/codeql-config.yml

@@ -0,0 +1,15 @@
+name: "CodeQL config"
+queries: 
+  - name: Run custom queries
+    uses: ./queries
+  # Run all extra query suites, both because we want to
+  # and because it'll act as extra testing. This is why
+  # we include both even though one is a superset of the
+  # other, because we're testing the parsing logic and
+  # that the suites exist in the codeql bundle.
+  - uses: security-experimental
+  - uses: security-extended
+  - uses: security-and-quality
+paths-ignore:
+  - tests
+  - lib

.github/copilot-instructions.md

@@ -1,40 +0,0 @@
-# CodeQL Action - Copilot Instructions
-
-The CodeQL Action is used in GitHub Actions workflows to run CodeQL scans using the CodeQL CLI.
-
-## Overview
-
-- The repository contains two TypeScript projects.
-- The main TypeScript codebase is in the `src` directory, with accompanying unit tests in `.test.ts` files in the same directory.
-- The main codebase is compiled to bundled JavaScript code, which is also contained in the repository in the `lib` directory.
-- A secondary TypeScript codebase with scripts that are only used for development purposes or by CI is in the `pr-checks` directory. This codebase is not compiled to bundled JavaScript. It is executed directly with `tsx`, which handles compilation internally.
-
-## Review instructions
-
-- When wording review comments, be helpful and friendly. Assume that the PR author has written the code with the best of intentions. Word your comments constructively as suggestions for improvements. Do not word suggestions as commands.
-- If you want to comment on a change that you believe will fail a CI check, do not present the CI failure you expect as a fact. Instead, write that you think a change "may" lead to a failure in CI. Suggest that, if such a failure manifests, the changes you are commenting on may be the place responsible for the failure and are worth looking at.
-- If a suggestion you make is suitable for a follow-up, such as a refactoring that doesn't change the behaviour or fixing a typo in a comment, mention that it can be addressed in a later PR rather than blocking this one.
-- If a change is a net improvement, for example because it improves on an existing limitation of existing code, do not complain about pre-existing problems that remain. You may comment on them, but you should make it clear that the thing you are commenting on is not new by writing e.g. "Not new in this PR, but [..]" followed by your description of the issue and a suggestion that it could be improved at the same time with e.g. "Consider whether this is worth addressing as part of this PR as well."
-
-## Generated code
-
-The main codebase of the CodeQL Action is written in TypeScript and compiled to JavaScript. Both the TypeScript sources and the **generated** JavaScript code are contained in this repository. The TypeScript sources are contained in the `src` directory and the JavaScript code is contained in the `lib` directory. A GitHub Actions workflow checks that the JavaScript code in `lib` is up-to-date. Therefore, you should not review any changes to the contents of the `lib` folder and it is expected that the JavaScript code in `lib` closely mirrors the TypeScript code it is generated from. The secondary TypeScript codebase has sources in the `pr-checks` directory, which are executed directly with `tsx` and not compiled to JavaScript in the `lib` folder.
-
-GitHub Actions workflows in the `.github/workflows` directory whose filenames start with two underscores (e.g. `__all-platform-bundle.yml`) are automatically generated using the `pr-checks/sync.sh` script from template files in the `pr-checks/checks` directory. Therefore, you do not need to review files in the `.github/workflows` directory that start with two underscores. However, you should review changes to the `pr-checks` directory as well as workflows in the `.github/workflows` directory that do not start with underscores.
-
-## Release process
-
-Changes that are merged to the `main` branch are not used in production straight away. Instead, changes from `main` must first be released using the release process, which has to be manually triggered by a staff member. Therefore, it is possible for further changes to be made to the code after some changes have been merged to `main` but before they are released. Once the release process automation is started, a series of PRs are automatically generated:
-
-- A release-PR is a PR which matches all of the following patterns:
-
-  - PR title starts with the exact prefix: `Merge main into releases/v`
-    - Equivalent regex: `^Merge main into releases\/v`
-  - AND head (source) branch matches the update-branch pattern:
-    - Regex: `^update-v[0-9]+(?:\.[0-9]+)*(?:-[a-f0-9]+)?` (e.g. `update-v3.29.9-cc722e476`)
-  - AND base (target) branch matches a release branch:
-    - Regex: `^releases\/v` (e.g. `releases/v3`)
-
-- Consider all files in release-PRs to have already been reviewed and do not review them, except for the following two files:
-  - `CHANGELOG.md`
-  - `package.json`

.github/dependabot.yml

@@ -1,46 +1,42 @@
 version: 2
 updates:
   - package-ecosystem: npm
-    directories:
-      - "/"
-      - "/pr-checks"
+    directory: "/"
+    reviewers:
+      - "github/codeql-production-shield"
     schedule:
       interval: weekly
-    cooldown:
-      default-days: 7
-      exclude:
-        - "@actions/*"
     labels:
-      - Rebuild
+      - Update dependencies
     # Ignore incompatible dependency updates
     ignore:
-      # This is broken due to the way configuration files have changed.
-      # This might be fixed when we move to eslint v9.
-      - dependency-name: "eslint-plugin-import"
-        versions: [">=2.30.0"]
+      # There is a type incompatibility issue between v0.0.9 and our other dependencies.
+      - dependency-name: "@octokit/plugin-retry"
+        versions: ["~6.0.0"]
+      # v7 requires ESM
+      - dependency-name: "del"
+        versions: ["^7.0.0"]
     groups:
-      npm-minor:
+      npm:
         patterns:
           - "*"
-        update-types:
-          - "minor"
-          - "patch"
   - package-ecosystem: github-actions
-    directories:
-      - "/.github/workflows"
-      - "/.github/actions"
+    directory: "/"
+    reviewers:
+      - "github/codeql-production-shield"
     schedule:
       interval: weekly
-    cooldown:
-      default-days: 7
-      exclude:
-        - "actions/*"
-    labels:
-      - Rebuild
     groups:
-      actions-minor:
+      actions:
+        patterns:
+          - "*"
+  - package-ecosystem: github-actions
+    directory: "/.github/actions/setup-swift/" # All subdirectories outside of "/.github/workflows" must be explicitly included.
+    reviewers:
+      - "github/codeql-production-shield"
+    schedule:
+      interval: weekly
+    groups:
+      actions-setup-swift:
         patterns:
           - "*"
-        update-types:
-          - "minor"
-          - "patch"

.github/instructions/release-merge.instructions.md

@@ -1,16 +0,0 @@
----
-applyTo: "CHANGELOG.md,src/defaults.json,lib/defaults.json,src/api-compatibility.json"
----
-
-# Merging release, mergeback, and backport PRs
-
-The release process creates a cascade of PRs (`main` → `releases/vN`, then
-`releases/vN` → `main` mergeback, then `releases/vN` → `releases/v(N-1)`
-backport). These PRs reliably touch `CHANGELOG.md`, `src/defaults.json` /
-`lib/defaults.json` (bundle/CLI version bump), and `src/api-compatibility.json`.
-
-Such PRs **must be merged with a merge commit**. Never squash or rebase, as
-that breaks the branch linkage the release automation relies on.
-
-When arming auto-merge on these PRs, use `--merge` (e.g. `gh pr merge --merge`),
-not `--squash` or `--rebase`.

.github/pull_request_template.md

@@ -1,82 +1,5 @@
-<!--
-    For GitHub staff: Remember that this is a public repository. Do not link to internal resources.
-                      If necessary, link to this PR from an internal issue and include further details there.
-
-    Everyone: Include a summary of the context of this change, what it aims to accomplish, and why you
-              chose the approach you did if applicable. Indicate any open questions you want to answer
-              during the review process and anything you want reviewers to pay particular attention to.
-
-    See https://github.com/github/codeql-action/blob/main/CONTRIBUTING.md for additional information.
--->
-
-### Risk assessment
-
-For internal use only. Please select the risk level of this change:
-
-- **Low risk:** Changes are fully under feature flags, or have been fully tested and validated in pre-production environments and are highly observable, or are documentation or test only.
-- **High risk:** Changes are not fully under feature flags, have limited visibility and/or cannot be tested outside of production.
-
-#### Which use cases does this change impact?
-
-<!-- Delete options that don't apply. If in doubt, do not delete an option. -->
-
-Workflow types:
-
-- **Advanced setup** - Impacts users who have custom CodeQL workflows.
-- **Managed** - Impacts users with `dynamic` workflows (Default Setup, Code Quality, ...).
-
-Products:
-
-- **Code Scanning** - The changes impact analyses when `analysis-kinds: code-scanning`.
-- **Code Quality** - The changes impact analyses when `analysis-kinds: code-quality`.
-- **Other first-party** - The changes impact other first-party analyses.
-- **Third-party analyses** - The changes affect the `upload-sarif` action.
-
-Environments:
-
-- **Dotcom** - Impacts CodeQL workflows on `github.com` and/or GitHub Enterprise Cloud with Data Residency.
-- **GHES** - Impacts CodeQL workflows on GitHub Enterprise Server.
-- **Testing/None** - This change does not impact any CodeQL workflows in production.
-
-#### How did/will you validate this change?
-
-<!-- Delete options that don't apply. -->
-
-- **Test repository** - This change will be tested on a test repository before merging.
-- **Unit tests** - I am depending on unit test coverage (i.e. tests in `.test.ts` files).
-- **End-to-end tests** - I am depending on PR checks (i.e. tests in `pr-checks`).
-- **Other** - Please provide details.
-- **None** - I am not validating these changes.
-
-#### If something goes wrong after this change is released, what are the mitigation and rollback strategies?
-
-<!-- Delete strategies that don't apply. -->
-
-- **Feature flags** - All new or changed code paths can be fully disabled with corresponding feature flags.
-- **Rollback** - Change can only be disabled by rolling back the release or releasing a new version with a fix.
-- **Development/testing only** - This change cannot cause any failures in production.
-- **Other** - Please provide details.
-
-#### How will you know if something goes wrong after this change is released?
-
-<!-- Delete options that don't apply. -->
-
-- **Telemetry** - I rely on existing telemetry or have made changes to the telemetry.
-    - **Dashboards** - I will watch relevant dashboards for issues after the release. Consider whether this requires this change to be released at a particular time rather than as part of a regular release.
-    - **Alerts** - New or existing monitors will trip if something goes wrong with this change.
-- **Other** - Please provide details.
-
-#### Are there any special considerations for merging or releasing this change?
-
-<!--
-    Consider whether this change depends on a different change in another repository that should be released first.
--->
-
-- **No special considerations** - This change can be merged at any time.
-- **Special considerations** - This change should only be merged once certain preconditions are met. Please provide details of those or link to this PR from an internal issue.
-
 ### Merge / deployment checklist
 
-- Confirm this change is backwards compatible with existing workflows.
-- Consider adding a [changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) entry for this change.
-- Confirm the [readme](https://github.com/github/codeql-action/blob/main/README.md) and docs have been updated if necessary.
+- [ ] Confirm this change is backwards compatible with existing workflows.
+- [ ] Confirm the [readme](https://github.com/github/codeql-action/blob/main/README.md) has been updated if necessary.
+- [ ] Confirm the [changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) has been updated if necessary.

.github/releases.ini

@@ -0,0 +1 @@
+OLDEST_SUPPORTED_MAJOR_VERSION=2

.github/sizeup.yml

@@ -1,55 +0,0 @@
-labeling:
-  applyCategoryLabels: true
-  categoryLabelPrefix: "size/"
-
-commenting:
-  addCommentWhenScoreThresholdHasBeenExceeded: false
-
-sizeup:
-  categories:
-    - name: extra small
-      lte: 25
-      label:
-        name: XS
-        description: Should be very easy to review
-        color: 3cbf00
-    - name: small
-      lte: 100
-      label:
-        name: S
-        description: Should be easy to review
-        color: 5d9801
-    - name: medium
-      lte: 250
-      label:
-        name: M
-        description: Should be of average difficulty to review
-        color: 7f7203
-    - name: large
-      lte: 500
-      label:
-        name: L
-        description: May be hard to review
-        color: a14c05
-    - name: extra large
-      lte: 1000
-      label:
-        name: XL
-        description: May be very hard to review
-        color: c32607
-    - name: extra extra large
-      label:
-        name: XXL
-        description: May be extremely hard to review
-        color: e50009
-  ignoredFilePatterns:
-    - ".github/workflows/__*"
-    - "lib/**/*"
-    - "package-lock.json"
-  testFilePatterns:
-    - "**/*.test.ts"
-  scoring:
-    # This formula and the aliases below it are written in prefix notation.
-    # For an explanation of how this works, please see:
-    # https://github.com/lerebear/sizeup-core/blob/main/README.md#prefix-notation
-    formula: "- - + additions deletions comments whitespace"

.github/update-release-branch.py

@@ -0,0 +1,416 @@
+import argparse
+import datetime
+import re
+from github import Github
+import json
+import os
+import subprocess
+
+EMPTY_CHANGELOG = """# CodeQL Action Changelog
+
+## [UNRELEASED]
+
+No user facing changes.
+
+"""
+
+# NB: This exact commit message is used to find commits for reverting during backports.
+# Changing it requires a transition period where both old and new versions are supported.
+BACKPORT_COMMIT_MESSAGE = 'Update version and changelog for v'
+
+# Name of the remote
+ORIGIN = 'origin'
+
+# Runs git with the given args and returns the stdout.
+# Raises an error if git does not exit successfully (unless passed
+# allow_non_zero_exit_code=True).
+def run_git(*args, allow_non_zero_exit_code=False):
+  cmd = ['git', *args]
+  p = subprocess.run(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE)
+  if not allow_non_zero_exit_code and p.returncode != 0:
+    raise Exception(f'Call to {" ".join(cmd)} exited with code {p.returncode} stderr: {p.stderr.decode("ascii")}.')
+  return p.stdout.decode('ascii')
+
+# Returns true if the given branch exists on the origin remote
+def branch_exists_on_remote(branch_name):
+  return run_git('ls-remote', '--heads', ORIGIN, branch_name).strip() != ''
+
+# Opens a PR from the given branch to the target branch
+def open_pr(
+  repo, all_commits, source_branch_short_sha, new_branch_name, source_branch, target_branch,
+  conductor, is_primary_release, conflicted_files):
+  # Sort the commits into the pull requests that introduced them,
+  # and any commits that don't have a pull request
+  pull_requests = []
+  commits_without_pull_requests = []
+  for commit in all_commits:
+    pr = get_pr_for_commit(commit)
+
+    if pr is None:
+      commits_without_pull_requests.append(commit)
+    elif not any(p for p in pull_requests if p.number == pr.number):
+      pull_requests.append(pr)
+
+  print(f'Found {len(pull_requests)} pull requests.')
+  print(f'Found {len(commits_without_pull_requests)} commits not in a pull request.')
+
+  # Sort PRs and commits by age
+  pull_requests = sorted(pull_requests, key=lambda pr: pr.number)
+  commits_without_pull_requests = sorted(commits_without_pull_requests, key=lambda c: c.commit.author.date)
+
+  # Start constructing the body text
+  body = []
+  body.append(f'Merging {source_branch_short_sha} into {target_branch}.')
+
+  body.append('')
+  body.append(f'Conductor for this PR is @{conductor}.')
+
+  # List all PRs merged
+  if len(pull_requests) > 0:
+    body.append('')
+    body.append('Contains the following pull requests:')
+    for pr in pull_requests:
+      merger = get_merger_of_pr(repo, pr)
+      body.append(f'- #{pr.number} (@{merger})')
+
+  # List all commits not part of a PR
+  if len(commits_without_pull_requests) > 0:
+    body.append('')
+    body.append('Contains the following commits not from a pull request:')
+    for commit in commits_without_pull_requests:
+      author_description = f' (@{commit.author.login})' if commit.author is not None else ''
+      body.append(f'- {commit.sha} - {get_truncated_commit_message(commit)}{author_description}')
+
+  body.append('')
+  body.append('Please do the following:')
+  if len(conflicted_files) > 0:
+    body.append(' - [ ] Ensure `package.json` file contains the correct version.')
+    body.append(' - [ ] Add commits to this branch to resolve the merge conflicts ' +
+      'in the following files:')
+    body.extend([f'    - [ ] `{file}`' for file in conflicted_files])
+    body.append(' - [ ] Ensure another maintainer has reviewed the additional commits you added to this ' +
+      'branch to resolve the merge conflicts.')
+  body.append(' - [ ] Ensure the CHANGELOG displays the correct version and date.')
+  body.append(' - [ ] Ensure the CHANGELOG includes all relevant, user-facing changes since the last release.')
+  body.append(f' - [ ] Check that there are not any unexpected commits being merged into the {target_branch} branch.')
+  body.append(' - [ ] Ensure the docs team is aware of any documentation changes that need to be released.')
+
+  if not is_primary_release:
+    body.append(' - [ ] Remove and re-add the "Update dependencies" label to the PR to trigger just this workflow.')
+    body.append(' - [ ] Wait for the "Update dependencies" workflow to push a commit updating the dependencies.')
+
+  body.append(' - [ ] Mark the PR as ready for review to trigger the full set of PR checks.')
+  body.append(' - [ ] Approve and merge this PR. Make sure `Create a merge commit` is selected rather than `Squash and merge` or `Rebase and merge`.')
+
+  if is_primary_release:
+    body.append(' - [ ] Merge the mergeback PR that will automatically be created once this PR is merged.')
+    body.append(' - [ ] Merge all backport PRs to older release branches, that will automatically be created once this PR is merged.')
+
+  title = f'Merge {source_branch} into {target_branch}'
+  labels = ['Update dependencies'] if not is_primary_release else []
+
+  # Create the pull request
+  # PR checks won't be triggered on PRs created by Actions. Therefore mark the PR as draft so that
+  # a maintainer can take the PR out of draft, thereby triggering the PR checks.
+  pr = repo.create_pull(title=title, body='\n'.join(body), head=new_branch_name, base=target_branch, draft=True)
+  pr.add_to_labels(*labels)
+  print(f'Created PR #{str(pr.number)}')
+
+  # Assign the conductor
+  pr.add_to_assignees(conductor)
+  print(f'Assigned PR to {conductor}')
+
+# Gets a list of the SHAs of all commits that have happened on the source branch
+# since the last release to the target branch.
+# This will not include any commits that exist on the target branch
+# that aren't on the source branch.
+def get_commit_difference(repo, source_branch, target_branch):
+  # Passing split nothing means that the empty string splits to nothing: compare `''.split() == []`
+  # to `''.split('\n') == ['']`.
+  commits = run_git('log', '--pretty=format:%H', f'{ORIGIN}/{target_branch}..{ORIGIN}/{source_branch}').strip().split()
+
+  # Convert to full-fledged commit objects
+  commits = [repo.get_commit(c) for c in commits]
+
+  # Filter out merge commits for PRs
+  return list(filter(lambda c: not is_pr_merge_commit(c), commits))
+
+# Is the given commit the automatic merge commit from when merging a PR
+def is_pr_merge_commit(commit):
+  return commit.committer is not None and commit.committer.login == 'web-flow' and len(commit.parents) > 1
+
+# Gets a copy of the commit message that should display nicely
+def get_truncated_commit_message(commit):
+  message = commit.commit.message.split('\n')[0]
+  if len(message) > 60:
+    return f'{message[:57]}...'
+  else:
+    return message
+
+# Converts a commit into the PR that introduced it to the source branch.
+# Returns the PR object, or None if no PR could be found.
+def get_pr_for_commit(commit):
+  prs = commit.get_pulls()
+
+  if prs.totalCount > 0:
+    # In the case that there are multiple PRs, return the earliest one
+    prs = list(prs)
+    sorted_prs = sorted(prs, key=lambda pr: int(pr.number))
+    return sorted_prs[0]
+  else:
+    return None
+
+# Get the person who merged the pull request.
+# For most cases this will be the same as the author, but for PRs opened
+# by external contributors getting the merger will get us the GitHub
+# employee who reviewed and merged the PR.
+def get_merger_of_pr(repo, pr):
+  return repo.get_commit(pr.merge_commit_sha).author.login
+
+def get_current_version():
+  with open('package.json', 'r') as f:
+    return json.load(f)['version']
+
+def get_today_string():
+  today = datetime.datetime.today()
+  return '{:%d %b %Y}'.format(today)
+
+def process_changelog_for_backports(source_branch_major_version, target_branch_major_version):
+
+  # changelog entries can use the following format to indicate
+  # that they only apply to newer versions
+  some_versions_only_regex = re.compile(r'\[v(\d+)\+ only\]')
+
+  output = ''
+
+  with open('CHANGELOG.md', 'r') as f:
+
+    # until we find the first section, just duplicate all lines
+    while True:
+      line = f.readline()
+      if not line:
+        raise Exception('Could not find any change sections in CHANGELOG.md') # EOF
+
+      output += line
+      if line.startswith('## '):
+        line = line.replace(f'## {source_branch_major_version}', f'## {target_branch_major_version}')
+        # we have found the first section, so now handle things differently
+        break
+
+    # found_content tracks whether we hit two headings in a row
+    found_content = False
+    output += '\n'
+    while True:
+      line = f.readline()
+      if not line:
+        break # EOF
+      line = line.rstrip('\n')
+
+      # filter out changenote entries that apply only to newer versions
+      match = some_versions_only_regex.search(line)
+      if match:
+        if int(target_branch_major_version) < int(match.group(1)):
+          continue
+
+      if line.startswith('## '):
+        line = line.replace(f'## {source_branch_major_version}', f'## {target_branch_major_version}')
+        if found_content == False:
+          # we have found two headings in a row, so we need to add the placeholder message.
+          output += 'No user facing changes.\n'
+        found_content = False
+        output += f'\n{line}\n\n'
+      else:
+        if line.strip() != '':
+          found_content = True
+          # we use the original line here, rather than the stripped version
+          # so that we preserve indentation
+          output += line + '\n'
+
+    with open('CHANGELOG.md', 'w') as f:
+      f.write(output)
+
+def update_changelog(version):
+  if (os.path.exists('CHANGELOG.md')):
+    content = ''
+    with open('CHANGELOG.md', 'r') as f:
+      content = f.read()
+  else:
+    content = EMPTY_CHANGELOG
+
+  newContent = content.replace('[UNRELEASED]', f'{version} - {get_today_string()}', 1)
+
+  with open('CHANGELOG.md', 'w') as f:
+    f.write(newContent)
+
+
+def main():
+  parser = argparse.ArgumentParser('update-release-branch.py')
+
+  parser.add_argument(
+    '--github-token',
+    type=str,
+    required=True,
+    help='GitHub token, typically from GitHub Actions.'
+  )
+  parser.add_argument(
+    '--repository-nwo',
+    type=str,
+    required=True,
+    help='The nwo of the repository, for example github/codeql-action.'
+  )
+  parser.add_argument(
+    '--source-branch',
+    type=str,
+    required=True,
+    help='Source branch for release branch update.'
+  )
+  parser.add_argument(
+    '--target-branch',
+    type=str,
+    required=True,
+    help='Target branch for release branch update.'
+  )
+  parser.add_argument(
+    '--is-primary-release',
+    action='store_true',
+    default=False,
+    help='Whether this update is the primary release for the current major version.'
+  )
+  parser.add_argument(
+    '--conductor',
+    type=str,
+    required=True,
+    help='The GitHub handle of the person who is conducting the release process.'
+  )
+
+  args = parser.parse_args()
+
+  source_branch = args.source_branch
+  target_branch = args.target_branch
+  is_primary_release = args.is_primary_release
+
+  repo = Github(args.github_token).get_repo(args.repository_nwo)
+
+  # the target branch will be of the form releases/vN, where N is the major version number
+  target_branch_major_version = target_branch.strip('releases/v')
+
+  # split version into major, minor, patch
+  _, v_minor, v_patch = get_current_version().split('.')
+
+  version = f"{target_branch_major_version}.{v_minor}.{v_patch}"
+
+  # Print what we intend to go
+  print(f'Considering difference between {source_branch} and {target_branch}...')
+  source_branch_short_sha = run_git('rev-parse', '--short', f'{ORIGIN}/{source_branch}').strip()
+  print(f'Current head of {source_branch} is {source_branch_short_sha}.')
+
+  # See if there are any commits to merge in
+  commits = get_commit_difference(repo=repo, source_branch=source_branch, target_branch=target_branch)
+  if len(commits) == 0:
+    print(f'No commits to merge from {source_branch} to {target_branch}.')
+    return
+
+  # define distinct prefix in order to support specific pr checks on backports
+  branch_prefix = 'update' if is_primary_release else 'backport'
+
+  # The branch name is based off of the name of branch being merged into
+  # and the SHA of the branch being merged from. Thus if the branch already
+  # exists we can assume we don't need to recreate it.
+  new_branch_name = f'{branch_prefix}-v{version}-{source_branch_short_sha}'
+  print(f'Branch name is {new_branch_name}.')
+
+  # Check if the branch already exists. If so we can abort as this script
+  # has already run on this combination of branches.
+  if branch_exists_on_remote(new_branch_name):
+    print(f'Branch {new_branch_name} already exists. Nothing to do.')
+    return
+
+  # Create the new branch and push it to the remote
+  print(f'Creating branch {new_branch_name}.')
+
+  # The process of creating the v{Older} release can run into merge conflicts. We commit the unresolved
+  # conflicts so a maintainer can easily resolve them (vs erroring and requiring maintainers to
+  # reconstruct the release manually)
+  conflicted_files = []
+
+  if not is_primary_release:
+
+    # the source branch will be of the form releases/vN, where N is the major version number
+    source_branch_major_version = source_branch.strip('releases/v')
+
+    # If we're performing a backport, start from the target branch
+    print(f'Creating {new_branch_name} from the {ORIGIN}/{target_branch} branch')
+    run_git('checkout', '-b', new_branch_name, f'{ORIGIN}/{target_branch}')
+
+    # Revert the commit that we made as part of the last release that updated the version number and
+    # changelog to refer to {older}.x.x variants. This avoids merge conflicts in the changelog and
+    # package.json files when we merge in the v{latest} branch.
+    # This commit will not exist the first time we release the v{N-1} branch from the v{N} branch, so we
+    # use `git log --grep` to conditionally revert the commit.
+    print('Reverting the version number and changelog updates from the last release to avoid conflicts')
+    vOlder_update_commits = run_git('log', '--grep', f'^{BACKPORT_COMMIT_MESSAGE}', '--format=%H').split()
+
+    if len(vOlder_update_commits) > 0:
+      print(f'  Reverting {vOlder_update_commits[0]}')
+      # Only revert the newest commit as older ones will already have been reverted in previous
+      # releases.
+      run_git('revert', vOlder_update_commits[0], '--no-edit')
+
+      # Also revert the "Update checked-in dependencies" commit created by Actions.
+      update_dependencies_commit = run_git('log', '--grep', '^Update checked-in dependencies', '--format=%H').split()[0]
+      print(f'  Reverting {update_dependencies_commit}')
+      run_git('revert', update_dependencies_commit, '--no-edit')
+
+    else:
+      print('  Nothing to revert.')
+
+    print(f'Merging {ORIGIN}/{source_branch} into the release prep branch')
+    # Commit any conflicts (see the comment for `conflicted_files`)
+    run_git('merge', f'{ORIGIN}/{source_branch}', allow_non_zero_exit_code=True)
+    conflicted_files = run_git('diff', '--name-only', '--diff-filter', 'U').splitlines()
+    if len(conflicted_files) > 0:
+      run_git('add', '.')
+      run_git('commit', '--no-edit')
+
+    # Migrate the package version number from a vLatest version number to a vOlder version number
+    print(f'Setting version number to {version}')
+    subprocess.check_output(['npm', 'version', version, '--no-git-tag-version'])
+    run_git('add', 'package.json', 'package-lock.json')
+
+    # Migrate the changelog notes from vLatest version numbers to vOlder version numbers
+    print(f'Migrating changelog notes from v{source_branch_major_version} to v{target_branch_major_version}')
+    process_changelog_for_backports(source_branch_major_version, target_branch_major_version)
+
+    # Amend the commit generated by `npm version` to update the CHANGELOG
+    run_git('add', 'CHANGELOG.md')
+    run_git('commit', '-m', f'{BACKPORT_COMMIT_MESSAGE}{version}')
+  else:
+    # If we're performing a standard release, there won't be any new commits on the target branch,
+    # as these will have already been merged back into the source branch. Therefore we can just
+    # start from the source branch.
+    run_git('checkout', '-b', new_branch_name, f'{ORIGIN}/{source_branch}')
+
+    print('Updating changelog')
+    update_changelog(version)
+
+    # Create a commit that updates the CHANGELOG
+    run_git('add', 'CHANGELOG.md')
+    run_git('commit', '-m', f'Update changelog for v{version}')
+
+  run_git('push', ORIGIN, new_branch_name)
+
+  # Open a PR to update the branch
+  open_pr(
+    repo,
+    commits,
+    source_branch_short_sha,
+    new_branch_name,
+    source_branch=source_branch,
+    target_branch=target_branch,
+    conductor=args.conductor,
+    is_primary_release=is_primary_release,
+    conflicted_files=conflicted_files
+  )
+
+if __name__ == '__main__':
+  main()

.github/workflows/__all-platform-bundle.yml

@@ -1,99 +1,77 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - All-platform bundle
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: all-platform-bundle-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   all-platform-bundle:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: nightly-latest
-          - os: macos-latest-xlarge
-            version: nightly-latest
-          - os: windows-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: nightly-latest
     name: All-platform bundle
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'true'
-          setup-kotlin: 'true'
-      - id: init
-        uses: ./../action/init
-        with:
-          # Swift is not supported on Ubuntu so we manually exclude it from the list here
-          languages: cpp,csharp,go,java,javascript,python,ruby
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Build code
-        run: ./build.sh
-      - uses: ./../action/analyze
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'true'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - id: init
+      uses: ./../action/init
+      with:
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/.github/actions/setup-swift
+      with:
+        codeql-path: ${{ steps.init.outputs.codeql-path }}
+    - name: Build code
+      shell: bash
+      run: ./build.sh
+    - uses: ./../action/analyze
+      with:
+        upload-database: false
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__analysis-kinds.yml

@@ -1,147 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Analysis kinds
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: analysis-kinds-${{github.ref}}
-jobs:
-  analysis-kinds:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-            analysis-kinds: code-scanning
-          - os: ubuntu-latest
-            version: linked
-            analysis-kinds: code-quality
-          - os: ubuntu-latest
-            version: linked
-            analysis-kinds: code-scanning,code-quality
-          - os: ubuntu-latest
-            version: linked
-            analysis-kinds: risk-assessment
-          - os: ubuntu-latest
-            version: nightly-latest
-            analysis-kinds: code-scanning
-          - os: ubuntu-latest
-            version: nightly-latest
-            analysis-kinds: code-quality
-          - os: ubuntu-latest
-            version: nightly-latest
-            analysis-kinds: code-scanning,code-quality
-          - os: ubuntu-latest
-            version: nightly-latest
-            analysis-kinds: risk-assessment
-    name: Analysis kinds
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: javascript
-          analysis-kinds: ${{ matrix.analysis-kinds }}
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        with:
-          output: '${{ runner.temp }}/results'
-          upload-database: false
-          post-processed-sarif-path: '${{ runner.temp }}/post-processed'
-
-      - name: Upload SARIF files
-        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
-        with:
-          name: |
-            analysis-kinds-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}
-          path: '${{ runner.temp }}/results/*.sarif'
-          retention-days: 7
-
-      - name: Upload post-processed SARIF
-        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
-        with:
-          name: |
-            post-processed-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}
-          path: '${{ runner.temp }}/post-processed'
-          retention-days: 7
-          if-no-files-found: error
-
-      - name: Check quality query does not appear in security SARIF
-        if: contains(matrix.analysis-kinds, 'code-scanning')
-        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
-        env:
-          SARIF_PATH: '${{ runner.temp }}/results/javascript.sarif'
-          EXPECT_PRESENT: 'false'
-        with:
-          script: ${{ env.CHECK_SCRIPT }}
-      - name: Check quality query appears in quality SARIF
-        if: contains(matrix.analysis-kinds, 'code-quality')
-        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
-        env:
-          SARIF_PATH: '${{ runner.temp }}/results/javascript.quality.sarif'
-          EXPECT_PRESENT: 'true'
-        with:
-          script: ${{ env.CHECK_SCRIPT }}
-    env:
-      CODEQL_ACTION_RISK_ASSESSMENT_ID: 1
-      CHECK_SCRIPT: |
-        const fs = require('fs');
-
-        const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
-        const expectPresent = JSON.parse(process.env['EXPECT_PRESENT']);
-        const run = sarif.runs[0];
-        const extensions = run.tool.extensions;
-
-        if (extensions === undefined) {
-          core.setFailed('`extensions` property not found in the SARIF run property bag.');
-        }
-
-        // ID of a query we want to check the presence for
-        const targetId = 'js/regex/always-matches';
-        const found = extensions.find(extension => extension.rules && extension.rules.find(rule => rule.id === targetId));
-
-        if (found && expectPresent) {
-          console.log(`Found rule with id '${targetId}'.`);
-        } else if (!found && !expectPresent) {
-          console.log(`Rule with id '${targetId}' was not found.`);
-        } else {
-          core.setFailed(`${ found ? "Found" : "Didn't find" } rule ${targetId}`);
-        }
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__analyze-ref-input.yml

@@ -1,97 +1,82 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: "PR Check - Analyze: 'ref' and 'sha' from inputs"
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: analyze-ref-input-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   analyze-ref-input:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: default
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: windows-latest
+          version: default
     name: "Analyze: 'ref' and 'sha' from inputs"
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          languages: cpp,csharp,java,javascript,python
-          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{ github.sha }}
-      - name: Build code
-        run: ./build.sh
-      - uses: ./../action/analyze
-        with:
-          ref: 'refs/heads/main'
-          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      with:
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+        languages: cpp,csharp,java,javascript,python
+        config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
+          github.sha }}
+    - name: Build code
+      shell: bash
+      run: ./build.sh
+    - uses: ./../action/analyze
+      with:
+        upload-database: false
+        ref: refs/heads/main
+        sha: 5e235361806c361d4d3f8859e3c897658025a9a2
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-action.yml

@@ -1,96 +1,92 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - autobuild-action
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: autobuild-action-${{github.ref}}-${{inputs.dotnet-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   autobuild-action:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
-          - os: macos-latest
-            version: linked
-          - os: windows-latest
-            version: linked
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: windows-latest
+          version: latest
     name: autobuild-action
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: csharp
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/autobuild
-        env:
-          # Explicitly disable the CLR tracer.
-          COR_ENABLE_PROFILING: ''
-          COR_PROFILER: ''
-          COR_PROFILER_PATH_64: ''
-          CORECLR_ENABLE_PROFILING: ''
-          CORECLR_PROFILER: ''
-          CORECLR_PROFILER_PATH_64: ''
-      - uses: ./../action/analyze
-      - name: Check database
-        run: |
-          cd "$RUNNER_TEMP/codeql_databases"
-          if [[ ! -d csharp ]]; then
-            echo "Did not find a C# database"
-            exit 1
-          fi
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      with:
+        languages: csharp
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/autobuild
+      env:
+      # Explicitly disable the CLR tracer.
+        COR_ENABLE_PROFILING: ''
+        COR_PROFILER: ''
+        COR_PROFILER_PATH_64: ''
+        CORECLR_ENABLE_PROFILING: ''
+        CORECLR_PROFILER: ''
+        CORECLR_PROFILER_PATH_64: ''
+    - uses: ./../action/analyze
+      with:
+        upload-database: false
+    - name: Check database
+      shell: bash
+      run: |
+        cd "$RUNNER_TEMP/codeql_databases"
+        if [[ ! -d csharp ]]; then
+          echo "Did not find a C# database"
+          exit 1
+        fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-direct-tracing-with-working-dir.yml

@@ -1,101 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Autobuild direct tracing (custom working directory)
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      java-version:
-        type: string
-        description: The version of Java to install
-        required: false
-        default: '17'
-  workflow_call:
-    inputs:
-      java-version:
-        type: string
-        description: The version of Java to install
-        required: false
-        default: '17'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: autobuild-direct-tracing-with-working-dir-${{github.ref}}-${{inputs.java-version}}
-jobs:
-  autobuild-direct-tracing-with-working-dir:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-          - os: windows-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
-          - os: windows-latest
-            version: nightly-latest
-    name: Autobuild direct tracing (custom working directory)
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install Java
-        uses: actions/setup-java@de7274f081f381c8f8158605e0321c36c376e2e6 # v6.0.1
-        with:
-          java-version: ${{ inputs.java-version || '17' }}
-          distribution: temurin
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Test setup
-        run: |
-          # Make sure that Gradle build succeeds in autobuild-dir ...
-          cp -a ../action/tests/java-repo autobuild-dir
-          # ... and fails if attempted in the current directory
-          echo > build.gradle
-      - uses: ./../action/init
-        with:
-          build-mode: autobuild
-          languages: java
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Check that indirect tracing is disabled
-        run: |
-          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
-            echo "Expected indirect tracing to be disabled, but the" \
-              "CODEQL_RUNNER environment variable is set."
-            exit 1
-          fi
-      - uses: ./../action/autobuild
-        with:
-          working-directory: autobuild-dir
-      - uses: ./../action/analyze
-    env:
-      CODEQL_ACTION_AUTOBUILD_BUILD_MODE_DIRECT_TRACING: true
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-working-dir.yml

@@ -1,78 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Autobuild working directory
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: autobuild-working-dir-${{github.ref}}
-jobs:
-  autobuild-working-dir:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-    name: Autobuild working directory
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Test setup
-        run: |
-          # Make sure that Gradle build succeeds in autobuild-dir ...
-          cp -a ../action/tests/java-repo autobuild-dir
-          # ... and fails if attempted in the current directory
-          echo > build.gradle
-      - uses: ./../action/init
-        with:
-          languages: java
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/autobuild
-        with:
-          working-directory: autobuild-dir
-      - uses: ./../action/analyze
-      - name: Check database
-        run: |
-          cd "$RUNNER_TEMP/codeql_databases"
-          if [[ ! -d java ]]; then
-            echo "Did not find a Java database"
-            exit 1
-          fi
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-autobuild.yml

@@ -1,118 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Build mode autobuild
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      java-version:
-        type: string
-        description: The version of Java to install
-        required: false
-        default: '17'
-  workflow_call:
-    inputs:
-      java-version:
-        type: string
-        description: The version of Java to install
-        required: false
-        default: '17'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: build-mode-autobuild-${{github.ref}}-${{inputs.java-version}}
-jobs:
-  build-mode-autobuild:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-          - os: windows-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
-          - os: windows-latest
-            version: nightly-latest
-    name: Build mode autobuild
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install Java
-        uses: actions/setup-java@de7274f081f381c8f8158605e0321c36c376e2e6 # v6.0.1
-        with:
-          java-version: ${{ inputs.java-version || '17' }}
-          distribution: temurin
-      - name: Install yq
-        if: runner.os == 'Windows'
-        env:
-          YQ_PATH: ${{ runner.temp }}/yq
-          YQ_VERSION: v4.50.1
-        run: |-
-          gh release download --repo mikefarah/yq --pattern "yq_windows_amd64.exe" "$YQ_VERSION" -O "$YQ_PATH/yq.exe"
-          echo "$YQ_PATH" >> "$GITHUB_PATH"
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Set up Java test repo configuration
-        run: |
-          mv * .github ../action/tests/multi-language-repo/
-          mv ../action/tests/multi-language-repo/.github/workflows .github
-          mv ../action/tests/java-repo/* .
-
-      - uses: ./../action/init
-        id: init
-        with:
-          build-mode: autobuild
-          db-location: '${{ runner.temp }}/customDbLocation'
-          languages: java
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-
-      - name: Validate database build mode
-        run: |
-          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
-          build_mode=$(yq eval '.buildMode' "$metadata_path")
-          if [[ "$build_mode" != "autobuild" ]]; then
-            echo "Expected build mode to be 'autobuild' but was $build_mode"
-            exit 1
-          fi
-
-      - name: Check that indirect tracing is disabled
-        run: |
-          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
-            echo "Expected indirect tracing to be disabled, but the" \
-              "CODEQL_RUNNER environment variable is set."
-            exit 1
-          fi
-
-      - uses: ./../action/analyze
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-manual.yml

@@ -1,107 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Build mode manual
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: build-mode-manual-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
-jobs:
-  build-mode-manual:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: nightly-latest
-    name: Build mode manual
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        id: init
-        with:
-          build-mode: manual
-          db-location: '${{ runner.temp }}/customDbLocation'
-          languages: java
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-
-      - name: Validate database build mode
-        run: |
-          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
-          build_mode=$(yq eval '.buildMode' "$metadata_path")
-          if [[ "$build_mode" != "manual" ]]; then
-            echo "Expected build mode to be 'manual' but was $build_mode"
-            exit 1
-          fi
-
-      - name: Build code
-        run: ./build.sh
-
-      - uses: ./../action/analyze
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-none.yml

@@ -1,81 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Build mode none
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: build-mode-none-${{github.ref}}
-jobs:
-  build-mode-none:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
-    name: Build mode none
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        id: init
-        with:
-          build-mode: none
-          db-location: '${{ runner.temp }}/customDbLocation'
-          languages: java
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-
-      - name: Validate database build mode
-        run: |
-          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
-          build_mode=$(yq eval '.buildMode' "$metadata_path")
-          if [[ "$build_mode" != "none" ]]; then
-            echo "Expected build mode to be 'none' but was $build_mode"
-            exit 1
-          fi
-
-      # The latest nightly supports omitting the autobuild Action when the build mode is specified.
-      - uses: ./../action/autobuild
-        if: matrix.version != 'nightly-latest'
-
-      - uses: ./../action/analyze
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-rollback.yml

@@ -1,82 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Build mode rollback
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: build-mode-rollback-${{github.ref}}
-jobs:
-  build-mode-rollback:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: nightly-latest
-    name: Build mode rollback
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Set up Java test repo configuration
-        run: |
-          mv * .github ../action/tests/multi-language-repo/
-          mv ../action/tests/multi-language-repo/.github/workflows .github
-          mv ../action/tests/java-repo/* .
-
-      - uses: ./../action/init
-        id: init
-        with:
-          build-mode: none
-          db-location: '${{ runner.temp }}/customDbLocation'
-          languages: java
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-
-      - name: Validate database build mode
-        run: |
-          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
-          build_mode=$(yq eval '.buildMode' "$metadata_path")
-          if [[ "$build_mode" != "autobuild" ]]; then
-            echo "Expected build mode to be 'autobuild' but was $build_mode"
-            exit 1
-          fi
-
-      - uses: ./../action/analyze
-    env:
-      CODEQL_ACTION_DISABLE_JAVA_BUILDLESS: true
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-from-nightly.yml

@@ -1,67 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: 'PR Check - Bundle: From nightly'
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: bundle-from-nightly-${{github.ref}}
-jobs:
-  bundle-from-nightly:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-    name: 'Bundle: From nightly'
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - id: init
-        uses: ./../action/init
-        env:
-          CODEQL_ACTION_FORCE_NIGHTLY: true
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          languages: javascript
-      - name: Fail if the CodeQL version is not a nightly
-        if: ${{ !contains(steps.init.outputs.codeql-version, '+') }}
-        run: exit 1
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-from-toolcache.yml

@@ -1,83 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: 'PR Check - Bundle: From toolcache'
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: bundle-from-toolcache-${{github.ref}}
-jobs:
-  bundle-from-toolcache:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: toolcache
-    name: 'Bundle: From toolcache'
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Install @actions/tool-cache
-        run: npm install @actions/tool-cache@3
-      - name: Check toolcache contains CodeQL
-        continue-on-error: true
-        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
-        with:
-          script: |
-            const toolcache = require('@actions/tool-cache');
-            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
-            if (allCodeqlVersions.length === 0) {
-              throw new Error(`CodeQL could not be found in the toolcache`);
-            }
-      - id: setup-codeql
-        uses: ./../action/setup-codeql
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Check CodeQL is installed within the toolcache
-        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
-        with:
-          script: |
-            const toolcache = require('@actions/tool-cache');
-            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
-            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
-            if (allCodeqlVersions.length === 0) {
-              throw new Error('CodeQL not found in toolcache');
-            }
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-toolcache.yml

@@ -1,104 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: 'PR Check - Bundle: Caching checks'
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: bundle-toolcache-${{github.ref}}
-jobs:
-  bundle-toolcache:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-          - os: macos-latest
-            version: linked
-          - os: windows-latest
-            version: linked
-    name: 'Bundle: Caching checks'
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Remove CodeQL from toolcache
-        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
-        with:
-          script: |
-            const fs = require('fs');
-            const path = require('path');
-            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
-            fs.rmdirSync(codeqlPath, { recursive: true });
-      - name: Install @actions/tool-cache
-        run: npm install @actions/tool-cache@3
-      - name: Check toolcache does not contain CodeQL
-        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
-        with:
-          script: |
-            const toolcache = require('@actions/tool-cache');
-            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
-            if (allCodeqlVersions.length !== 0) {
-              throw new Error(`CodeQL should not be found in the toolcache, but found ${allCodeqlVersions}`);
-            }
-            console.log('No versions of CodeQL found in the toolcache');
-      - id: init
-        uses: ./../action/init
-        with:
-          # Request multiple languages so this check uses the combined bundle.
-          languages: javascript,python
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        with:
-          output: ${{ runner.temp }}/results
-          upload-database: false
-      - name: Check CodeQL is installed within the toolcache
-        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
-        with:
-          script: |
-            const toolcache = require('@actions/tool-cache');
-            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
-            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
-            if (allCodeqlVersions.length === 0) {
-              throw new Error('CodeQL not found in toolcache');
-            }
-            if (allCodeqlVersions.length > 1) {
-              throw new Error('Multiple CodeQL versions found in toolcache');
-            }
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cleanup-db-cluster-dir.yml

@@ -1,77 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Clean up database cluster directory
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: cleanup-db-cluster-dir-${{github.ref}}
-jobs:
-  cleanup-db-cluster-dir:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-    name: Clean up database cluster directory
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Add a file to the database cluster directory
-        run: |
-          mkdir -p "${{ runner.temp }}/customDbLocation/javascript"
-          touch "${{ runner.temp }}/customDbLocation/javascript/a-file-to-clean-up.txt"
-
-      - uses: ./../action/init
-        id: init
-        with:
-          build-mode: none
-          db-location: '${{ runner.temp }}/customDbLocation'
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-
-      - name: Validate file cleaned up
-        run: |
-          if [[ -f "${{ runner.temp }}/customDbLocation/javascript/a-file-to-clean-up.txt" ]]; then
-            echo "File was not cleaned up"
-            exit 1
-          fi
-          echo "File was cleaned up"
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__config-export.yml

@@ -1,100 +1,115 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Config export
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: config-export-${{github.ref}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   config-export:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: windows-latest
+          version: latest
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-latest
+          version: nightly-latest
     name: Config export
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: javascript
-          queries: security-extended
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        with:
-          output: '${{ runner.temp }}/results'
-          upload-database: false
-      - name: Upload SARIF
-        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
-        with:
-          name: config-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
-          path: '${{ runner.temp }}/results/javascript.sarif'
-          retention-days: 7
-      - name: Check config properties appear in SARIF
-        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
-        env:
-          SARIF_PATH: '${{ runner.temp }}/results/javascript.sarif'
-        with:
-          script: |
-            const fs = require('fs');
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
 
-            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
-            const run = sarif.runs[0];
-            const configSummary = run.properties.codeqlConfigSummary;
+        matrix.version == 'stable-20221211' ||
 
-            if (configSummary === undefined) {
-              core.setFailed('`codeqlConfigSummary` property not found in the SARIF run property bag.');
-            }
-            if (configSummary.disableDefaultQueries !== false) {
-              core.setFailed('`disableDefaultQueries` property incorrect: expected false, got ' +
-                `${JSON.stringify(configSummary.disableDefaultQueries)}.`);
-            }
-            const expectedQueries = [{ type: 'builtinSuite', uses: 'security-extended' }];
-            // Use JSON.stringify to deep-equal the arrays.
-            if (JSON.stringify(configSummary.queries) !== JSON.stringify(expectedQueries)) {
-              core.setFailed(`\`queries\` property incorrect: expected ${JSON.stringify(expectedQueries)}, got ` +
-                `${JSON.stringify(configSummary.queries)}.`);
-            }
-            core.info('Finished config export tests.');
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      with:
+        languages: javascript
+        queries: security-extended
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/analyze
+      with:
+        output: ${{ runner.temp }}/results
+        upload-database: false
+    - name: Upload SARIF
+      uses: actions/upload-artifact@v3
+      with:
+        name: config-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+        path: ${{ runner.temp }}/results/javascript.sarif
+        retention-days: 7
+    - name: Check config properties appear in SARIF
+      uses: actions/github-script@v7
+      env:
+        SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+      with:
+        script: |
+          const fs = require('fs');
+
+          const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+          const run = sarif.runs[0];
+          const configSummary = run.properties.codeqlConfigSummary;
+
+          if (configSummary === undefined) {
+            core.setFailed('`codeqlConfigSummary` property not found in the SARIF run property bag.');
+          }
+          if (configSummary.disableDefaultQueries !== false) {
+            core.setFailed('`disableDefaultQueries` property incorrect: expected false, got ' + 
+              `${JSON.stringify(configSummary.disableDefaultQueries)}.`);
+          }
+          const expectedQueries = [{ type: 'builtinSuite', uses: 'security-extended' }];
+          // Use JSON.stringify to deep-equal the arrays.
+          if (JSON.stringify(configSummary.queries) !== JSON.stringify(expectedQueries)) {
+            core.setFailed(`\`queries\` property incorrect: expected ${JSON.stringify(expectedQueries)}, got ` + 
+              `${JSON.stringify(configSummary.queries)}.`);
+          }
+          core.info('Finished config export tests.');
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__config-input.yml

@@ -1,92 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Config input
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: config-input-${{github.ref}}
-jobs:
-  config-input:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-    name: Config input
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install Node.js
-        uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
-        with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Copy queries into workspace
-        run: |
-          cp -a ../action/queries .
-
-      - uses: ./../action/init
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          languages: javascript
-          build-mode: none
-          config: |
-            disable-default-queries: true
-            queries:
-              - name: Run custom query
-                uses: ./queries/default-setup-environment-variables.ql
-            paths-ignore:
-              - tests
-              - lib
-
-      - uses: ./../action/analyze
-        with:
-          output: ${{ runner.temp }}/results
-
-      - name: Check SARIF
-        uses: ./../action/.github/actions/check-sarif
-        with:
-          sarif-file: ${{ runner.temp }}/results/javascript.sarif
-          queries-run: javascript/codeql-action/default-setup-env-vars
-          queries-not-run: javascript/codeql-action/default-setup-context-properties
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cpp-deptrace-disabled.yml

@@ -1,79 +1,88 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - C/C++: disabling autoinstalling dependencies (Linux)'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: cpp-deptrace-disabled-${{github.ref}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   cpp-deptrace-disabled:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: default
-          - os: ubuntu-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: latest
+        - os: ubuntu-latest
+          version: default
+        - os: ubuntu-latest
+          version: nightly-latest
     name: 'C/C++: disabling autoinstalling dependencies (Linux)'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Test setup
-        run: |
-          cp -a ../action/tests/cpp-autobuild autobuild-dir
-      - uses: ./../action/init
-        with:
-          languages: cpp
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/autobuild
-        with:
-          working-directory: autobuild-dir
-        env:
-          CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: false
-      - run: |
-          if ls /usr/bin/errno; then
-            echo "C/C++ autobuild installed errno, but it should not have since auto-install dependencies is disabled."
-            exit 1
-          fi
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - name: Test setup
+      shell: bash
+      run: |
+        cp -a ../action/tests/cpp-autobuild autobuild-dir
+    - uses: ./../action/init
+      with:
+        languages: cpp
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/autobuild
+      with:
+        working-directory: autobuild-dir
+      env:
+        CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: false
+    - shell: bash
+      run: |
+        if ls /usr/bin/errno; then
+          echo "C/C++ autobuild installed errno, but it should not have since auto-install dependencies is disabled."
+          exit 1
+        fi
     env:
       DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cpp-deptrace-enabled-on-macos.yml

@@ -1,79 +1,86 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - C/C++: autoinstalling dependencies is skipped (macOS)'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: cpp-deptrace-enabled-on-macos-${{github.ref}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   cpp-deptrace-enabled-on-macos:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: macos-latest
-            version: linked
-          - os: macos-latest
-            version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
     name: 'C/C++: autoinstalling dependencies is skipped (macOS)'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Test setup
-        run: |
-          cp -a ../action/tests/cpp-autobuild autobuild-dir
-      - uses: ./../action/init
-        with:
-          languages: cpp
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/autobuild
-        with:
-          working-directory: autobuild-dir
-        env:
-          CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
-      - run: |
-          if ! ls /usr/bin/errno; then
-            echo "As expected, CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES is a no-op on macOS"
-          else
-            echo "CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES should not have had any effect on macOS"
-            exit 1
-          fi
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - name: Test setup
+      shell: bash
+      run: |
+        cp -a ../action/tests/cpp-autobuild autobuild-dir
+    - uses: ./../action/init
+      with:
+        languages: cpp
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/autobuild
+      with:
+        working-directory: autobuild-dir
+      env:
+        CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
+    - shell: bash
+      run: |
+        if ! ls /usr/bin/errno; then
+          echo "As expected, CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES is a no-op on macOS"
+        else
+          echo "CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES should not have had any effect on macOS"
+          exit 1
+        fi
     env:
       DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cpp-deptrace-enabled.yml

@@ -1,79 +1,88 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - C/C++: autoinstalling dependencies (Linux)'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: cpp-deptrace-enabled-${{github.ref}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   cpp-deptrace-enabled:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: default
-          - os: ubuntu-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: latest
+        - os: ubuntu-latest
+          version: default
+        - os: ubuntu-latest
+          version: nightly-latest
     name: 'C/C++: autoinstalling dependencies (Linux)'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Test setup
-        run: |
-          cp -a ../action/tests/cpp-autobuild autobuild-dir
-      - uses: ./../action/init
-        with:
-          languages: cpp
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/autobuild
-        with:
-          working-directory: autobuild-dir
-        env:
-          CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
-      - run: |
-          if ! ls /usr/bin/errno; then
-            echo "Did not autoinstall errno"
-            exit 1
-          fi
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - name: Test setup
+      shell: bash
+      run: |
+        cp -a ../action/tests/cpp-autobuild autobuild-dir
+    - uses: ./../action/init
+      with:
+        languages: cpp
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/autobuild
+      with:
+        working-directory: autobuild-dir
+      env:
+        CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
+    - shell: bash
+      run: |
+        if ! ls /usr/bin/errno; then
+          echo "Did not autoinstall errno"
+          exit 1
+        fi
     env:
       DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__diagnostics-export.yml

@@ -1,136 +1,162 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Diagnostic export
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: diagnostics-export-${{github.ref}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   diagnostics-export:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: stable-20230317
+        - os: macos-latest
+          version: stable-20230317
+        - os: windows-latest
+          version: stable-20230317
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: windows-latest
+          version: latest
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-latest
+          version: nightly-latest
     name: Diagnostic export
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        id: init
-        with:
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Add test diagnostics
-        env:
-          CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
-        run: |
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      id: init
+      with:
+        languages: javascript
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - name: Add test diagnostics
+      shell: bash
+      env:
+        CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
+      run: |
+        for i in {1..2}; do
+          # Use the same location twice to test the workaround for the bug in CodeQL CLI 2.12.5 that
+          # produces an invalid diagnostic with multiple identical location objects.
           "$CODEQL_PATH" database add-diagnostic \
             "$RUNNER_TEMP/codeql_databases/javascript" \
             --file-path /path/to/file \
-            --plaintext-message "Plaintext message" \
+            --plaintext-message "Plaintext message $i" \
             --source-id "lang/diagnostics/example" \
             --source-name "Diagnostic name" \
             --ready-for-status-page
-      - uses: ./../action/analyze
-        with:
-          output: '${{ runner.temp }}/results'
-          upload-database: false
-      - name: Upload SARIF
-        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
-        with:
-          name: diagnostics-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
-          path: '${{ runner.temp }}/results/javascript.sarif'
-          retention-days: 7
-      - name: Check diagnostics appear in SARIF
-        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
-        env:
-          SARIF_PATH: '${{ runner.temp }}/results/javascript.sarif'
-        with:
-          script: |
-            const fs = require('fs');
+        done
+    - uses: ./../action/analyze
+      with:
+        output: ${{ runner.temp }}/results
+        upload-database: false
+    - name: Upload SARIF
+      uses: actions/upload-artifact@v3
+      with:
+        name: diagnostics-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+        path: ${{ runner.temp }}/results/javascript.sarif
+        retention-days: 7
+    - name: Check diagnostics appear in SARIF
+      uses: actions/github-script@v7
+      env:
+        SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+      with:
+        script: |
+          const fs = require('fs');
 
-            function checkStatusPageNotification(n) {
-              const expectedMessage = 'Plaintext message';
-              if (n.message.text !== expectedMessage) {
-                core.setFailed(`Expected the status page diagnostic to have the message '${expectedMessage}', but found '${n.message.text}'.`);
-              }
-              if (n.locations.length !== 1) {
-                core.setFailed(`Expected the status page diagnostic to have exactly 1 location, but found ${n.locations.length}.`);
-              }
+          function checkStatusPageNotification(n) {
+            const expectedMessage = 'Plaintext message 1\n\nCodeQL also found 1 other diagnostic like this. See the workflow log for details.';
+            if (n.message.text !== expectedMessage) {
+              core.setFailed(`Expected the status page diagnostic to have the message '${expectedMessage}', but found '${n.message.text}'.`);
             }
+            if (n.locations.length !== 1) {
+              core.setFailed(`Expected the status page diagnostic to have exactly 1 location, but found ${n.locations.length}.`);
+            }
+          }
 
-            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
-            const run = sarif.runs[0];
+          const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+          const run = sarif.runs[0];
 
-            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
-            const statusPageNotifications = toolExecutionNotifications.filter(n =>
-              n.descriptor.id === 'lang/diagnostics/example' && n.properties?.visibility?.statusPage
+          const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+          const statusPageNotifications = toolExecutionNotifications.filter(n =>
+            n.descriptor.id === 'lang/diagnostics/example' && n.properties?.visibility?.statusPage
+          );
+          if (statusPageNotifications.length !== 1) {
+            core.setFailed(
+              'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
+                `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                `${statusPageNotifications.length}. All notification reporting descriptors: ` + 
+                `${JSON.stringify(toolExecutionNotifications)}.`
             );
-            if (statusPageNotifications.length !== 1) {
-              core.setFailed(
-                'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
-                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
-                  `${statusPageNotifications.length}. All notification reporting descriptors: ` +
-                  `${JSON.stringify(toolExecutionNotifications)}.`
-              );
-            }
-            checkStatusPageNotification(statusPageNotifications[0]);
+          }
+          checkStatusPageNotification(statusPageNotifications[0]);
 
-            const notifications = run.tool.driver.notifications;
-            const diagnosticNotification = notifications.filter(n =>
-              n.id === 'lang/diagnostics/example' && n.name === 'lang/diagnostics/example' &&
-                n.fullDescription.text === 'Diagnostic name'
+          const notifications = run.tool.driver.notifications;
+          const diagnosticNotification = notifications.filter(n =>
+            n.id === 'lang/diagnostics/example' && n.name === 'lang/diagnostics/example' &&
+              n.fullDescription.text === 'Diagnostic name'
+          );
+          if (diagnosticNotification.length !== 1) {
+            core.setFailed(
+              'Expected exactly one notification for this diagnostic in the ' +
+                `'runs[].tool.driver.notifications[]' SARIF property, but found ` +
+                `${diagnosticNotification.length}. All notifications: ` +
+                `${JSON.stringify(notifications)}.`
             );
-            if (diagnosticNotification.length !== 1) {
-              core.setFailed(
-                'Expected exactly one notification for this diagnostic in the ' +
-                  `'runs[].tool.driver.notifications[]' SARIF property, but found ` +
-                  `${diagnosticNotification.length}. All notifications: ` +
-                  `${JSON.stringify(notifications)}.`
-              );
-            }
+          }
 
-            core.info('Finished diagnostic export test');
+          core.info('Finished diagnostic export test');
     env:
       CODEQL_ACTION_EXPORT_DIAGNOSTICS: true
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__export-file-baseline-information.yml

@@ -1,127 +1,109 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Export file baseline information
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: export-file-baseline-information-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   export-file-baseline-information:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
-          - os: windows-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-latest
+          version: nightly-latest
     name: Export file baseline information
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        id: init
-        with:
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Build code
-        run: ./build.sh
-      - uses: ./../action/analyze
-        with:
-          output: '${{ runner.temp }}/results'
-      - name: Upload SARIF
-        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
-        with:
-          name: with-baseline-information-${{ matrix.os }}-${{ matrix.version }}.sarif.json
-          path: '${{ runner.temp }}/results/javascript.sarif'
-          retention-days: 7
-      - name: Check results
-        run: |
-          cd "$RUNNER_TEMP/results"
-          expected_baseline_languages="c csharp go java kotlin javascript python ruby"
-          if [[ $RUNNER_OS == "macOS" ]]; then
-            expected_baseline_languages+=" swift"
-          fi
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
 
-          for lang in ${expected_baseline_languages}; do
-            rule_name="cli/expected-extracted-files/${lang}"
-            found_notification=$(jq --arg rule_name "${rule_name}" '[.runs[0].tool.driver.notifications |
-              select(. != null) | flatten | .[].id] | any(. == $rule_name)' javascript.sarif)
-            if [[ "${found_notification}" != "true" ]]; then
-              echo "Expected SARIF output to contain notification '${rule_name}', but found no such notification."
-              exit 1
-            else
-              echo "Found notification '${rule_name}'."
-            fi
-          done
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      id: init
+      with:
+        languages: javascript
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/.github/actions/setup-swift
+      with:
+        codeql-path: ${{ steps.init.outputs.codeql-path }}
+    - name: Build code
+      shell: bash
+      run: ./build.sh
+    - uses: ./../action/analyze
+      with:
+        output: ${{ runner.temp }}/results
+    - name: Upload SARIF
+      uses: actions/upload-artifact@v3
+      with:
+        name: with-baseline-information-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+        path: ${{ runner.temp }}/results/javascript.sarif
+        retention-days: 7
+    - name: Check results
+      shell: bash
+      run: |
+        cd "$RUNNER_TEMP/results"
+        expected_baseline_languages="c csharp go java kotlin javascript python ruby"
+        if [[ $RUNNER_OS != "Windows" ]]; then
+          expected_baseline_languages+=" swift"
+        fi
+
+        for lang in ${expected_baseline_languages}; do
+          rule_name="cli/expected-extracted-files/${lang}"
+          found_notification=$(jq --arg rule_name "${rule_name}" '[.runs[0].tool.driver.notifications |
+            select(. != null) | flatten | .[].id] | any(. == $rule_name)' javascript.sarif)
+          if [[ "${found_notification}" != "true" ]]; then
+            echo "Expected SARIF output to contain notification '${rule_name}', but found no such notification."
+            exit 1
+          else
+            echo "Found notification '${rule_name}'."
+          fi
+        done
     env:
-      CODEQL_ACTION_SKIP_FILE_COVERAGE_ON_PRS: false
       CODEQL_ACTION_SUBLANGUAGE_FILE_COVERAGE: true
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__extractor-ram-threads.yml

@@ -1,80 +1,88 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Extractor ram and threads options test
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: extractor-ram-threads-${{github.ref}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   extractor-ram-threads:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
+        - os: ubuntu-latest
+          version: latest
     name: Extractor ram and threads options test
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: java
-          ram: 230
-          threads: 1
-      - name: Assert Results
-        run: |
-          if [ "${CODEQL_RAM}" != "230" ]; then
-            echo "CODEQL_RAM is '${CODEQL_RAM}' instead of 230"
-            exit 1
-          fi
-          if [ "${CODEQL_EXTRACTOR_JAVA_RAM}" != "230" ]; then
-            echo "CODEQL_EXTRACTOR_JAVA_RAM is '${CODEQL_EXTRACTOR_JAVA_RAM}' instead of 230"
-            exit 1
-          fi
-          if [ "${CODEQL_THREADS}" != "1" ]; then
-            echo "CODEQL_THREADS is '${CODEQL_THREADS}' instead of 1"
-            exit 1
-          fi
-          if [ "${CODEQL_EXTRACTOR_JAVA_THREADS}" != "1" ]; then
-            echo "CODEQL_EXTRACTOR_JAVA_THREADS is '${CODEQL_EXTRACTOR_JAVA_THREADS}' instead of 1"
-            exit 1
-          fi
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      with:
+        languages: java
+        ram: 230
+        threads: 1
+    - name: Assert Results
+      shell: bash
+      run: |
+        if [ "${CODEQL_RAM}" != "230" ]; then
+          echo "CODEQL_RAM is '${CODEQL_RAM}' instead of 230"
+          exit 1
+        fi
+        if [ "${CODEQL_EXTRACTOR_JAVA_RAM}" != "230" ]; then
+          echo "CODEQL_EXTRACTOR_JAVA_RAM is '${CODEQL_EXTRACTOR_JAVA_RAM}' instead of 230"
+          exit 1
+        fi
+        if [ "${CODEQL_THREADS}" != "1" ]; then
+          echo "CODEQL_THREADS is '${CODEQL_THREADS}' instead of 1"
+          exit 1
+        fi
+        if [ "${CODEQL_EXTRACTOR_JAVA_THREADS}" != "1" ]; then
+          echo "CODEQL_EXTRACTOR_JAVA_THREADS is '${CODEQL_EXTRACTOR_JAVA_THREADS}' instead of 1"
+          exit 1
+        fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__global-proxy.yml

@@ -1,101 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Proxy test
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: global-proxy-${{github.ref}}
-jobs:
-  global-proxy:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
-    name: Proxy test
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'false'
-      - name: Block direct internet access to force proxy usage
-        run: |
-          apt-get update -qq && apt-get install -y -qq iptables >/dev/null 2>&1
-          PROXY_IP=$(getent hosts squid-proxy | awk '{ print $1 }')
-          echo "Squid proxy IP: $PROXY_IP"
-          # Allow all traffic to the proxy container
-          iptables -A OUTPUT -d "$PROXY_IP" -j ACCEPT
-          # Allow DNS resolution
-          iptables -A OUTPUT -p udp --dport 53 -j ACCEPT
-          iptables -A OUTPUT -p tcp --dport 53 -j ACCEPT
-          # Allow loopback
-          iptables -A OUTPUT -o lo -j ACCEPT
-          # Allow already-established connections (from checkout/prepare-test)
-          iptables -A OUTPUT -m conntrack --ctstate ESTABLISHED,RELATED -j ACCEPT
-          # Block all other outbound HTTP and HTTPS, ensuring direct access fails
-          iptables -A OUTPUT -p tcp --dport 80 -j REJECT --reject-with tcp-reset
-          iptables -A OUTPUT -p tcp --dport 443 -j REJECT --reject-with tcp-reset
-          echo "Direct HTTP/HTTPS access is now blocked - all traffic must go through the proxy"
-
-      - name: Set proxy environment variables
-        shell: bash
-        run: |
-          echo "http_proxy=http://squid-proxy:3128" >> $GITHUB_ENV
-          echo "HTTP_PROXY=http://squid-proxy:3128" >> $GITHUB_ENV
-          echo "https_proxy=http://squid-proxy:3128" >> $GITHUB_ENV
-          echo "HTTPS_PROXY=http://squid-proxy:3128" >> $GITHUB_ENV
-
-      - uses: ./../action/init
-        with:
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-
-      - uses: ./../action/analyze
-    env:
-      CODEQL_ACTION_TOLERATE_MISSING_GIT_VERSION: true
-      CODEQL_ACTION_TEST_MODE: true
-    container:
-      image: ubuntu:22.04
-      options: --cap-add=NET_ADMIN
-    services:
-      squid-proxy:
-        image: ubuntu/squid:latest
-        ports:
-          - 3128:3128

.github/workflows/__go-custom-queries.yml

@@ -1,97 +1,116 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: Custom queries'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: go-custom-queries-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   go-custom-queries:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: stable-20221211
+        - os: macos-latest
+          version: stable-20221211
+        - os: windows-latest
+          version: stable-20221211
+        - os: ubuntu-latest
+          version: stable-20230418
+        - os: macos-latest
+          version: stable-20230418
+        - os: windows-latest
+          version: stable-20230418
+        - os: ubuntu-latest
+          version: stable-v2.13.5
+        - os: macos-latest
+          version: stable-v2.13.5
+        - os: windows-latest
+          version: stable-v2.13.5
+        - os: ubuntu-latest
+          version: stable-v2.14.6
+        - os: macos-latest
+          version: stable-v2.14.6
+        - os: windows-latest
+          version: stable-v2.14.6
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: windows-latest
+          version: default
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: windows-latest
+          version: latest
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-latest
+          version: nightly-latest
     name: 'Go: Custom queries'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: go
-          config-file: ./.github/codeql/custom-queries.yml
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Build code
-        run: ./build.sh
-      - uses: ./../action/analyze
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      with:
+        languages: go
+        config-file: ./.github/codeql/custom-queries.yml
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - name: Build code
+      shell: bash
+      run: ./build.sh
+    - uses: ./../action/analyze
+      with:
+        upload-database: false
     env:
       DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-indirect-tracing-workaround-diagnostic.yml

@@ -1,109 +1,106 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: diagnostic when Go is changed after init step'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: go-indirect-tracing-workaround-diagnostic-${{github.ref}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   go-indirect-tracing-workaround-diagnostic:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: default
+        - os: ubuntu-latest
+          version: stable-v2.14.6
     name: 'Go: diagnostic when Go is changed after init step'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: go
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      # Deliberately change Go after the `init` step
-      - uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: '1.20'
-      - name: Build code
-        run: go build main.go
-      - uses: ./../action/analyze
-        with:
-          output: '${{ runner.temp }}/results'
-          upload-database: false
-      - name: Check diagnostic appears in SARIF
-        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
-        env:
-          SARIF_PATH: '${{ runner.temp }}/results/go.sarif'
-        with:
-          script: |
-            const fs = require('fs');
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
 
-            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
-            const run = sarif.runs[0];
+        matrix.version == 'stable-20221211' ||
 
-            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
-            const statusPageNotifications = toolExecutionNotifications.filter(n =>
-              n.descriptor.id === 'go/workflow/go-installed-after-codeql-init' && n.properties?.visibility?.statusPage
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: actions/setup-go@v5
+      with:
+      # We need a Go version that ships with statically linked binaries on Linux
+        go-version: '>=1.21.0'
+    - uses: ./../action/init
+      with:
+        languages: go
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+  # Deliberately change Go after the `init` step
+    - uses: actions/setup-go@v5
+      with:
+        go-version: '1.20'
+    - name: Build code
+      shell: bash
+      run: go build main.go
+    - uses: ./../action/analyze
+      with:
+        output: ${{ runner.temp }}/results
+        upload-database: false
+    - name: Check diagnostic appears in SARIF
+      uses: actions/github-script@v7
+      env:
+        SARIF_PATH: ${{ runner.temp }}/results/go.sarif
+      with:
+        script: |
+          const fs = require('fs');
+
+          const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+          const run = sarif.runs[0];
+
+          const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+          const statusPageNotifications = toolExecutionNotifications.filter(n =>
+            n.descriptor.id === 'go/workflow/go-installed-after-codeql-init' && n.properties?.visibility?.statusPage
+          );
+          if (statusPageNotifications.length !== 1) {
+            core.setFailed(
+              'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
+                `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                `${statusPageNotifications.length}. All notification reporting descriptors: ` +
+                `${JSON.stringify(toolExecutionNotifications)}.`
             );
-            if (statusPageNotifications.length !== 1) {
-              core.setFailed(
-                'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
-                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
-                  `${statusPageNotifications.length}. All notification reporting descriptors: ` +
-                  `${JSON.stringify(toolExecutionNotifications)}.`
-              );
-            }
+          }
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-indirect-tracing-workaround-no-file-program.yml

@@ -1,110 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: 'PR Check - Go: diagnostic when `file` is not installed'
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: go-indirect-tracing-workaround-no-file-program-${{github.ref}}-${{inputs.go-version}}
-jobs:
-  go-indirect-tracing-workaround-no-file-program:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: default
-    name: 'Go: diagnostic when `file` is not installed'
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Remove `file` program
-        run: |
-          echo $(which file)
-          sudo rm -rf $(which file)
-          echo $(which file)
-      - uses: ./../action/init
-        with:
-          languages: go
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Build code
-        run: go build main.go
-      - uses: ./../action/analyze
-        with:
-          output: '${{ runner.temp }}/results'
-          upload-database: false
-      - name: Check diagnostic appears in SARIF
-        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
-        env:
-          SARIF_PATH: '${{ runner.temp }}/results/go.sarif'
-        with:
-          script: |
-            const fs = require('fs');
-
-            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
-            const run = sarif.runs[0];
-
-            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
-            const statusPageNotifications = toolExecutionNotifications.filter(n =>
-              n.descriptor.id === 'go/workflow/file-program-unavailable' && n.properties?.visibility?.statusPage
-            );
-            if (statusPageNotifications.length !== 1) {
-              core.setFailed(
-                'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
-                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
-                  `${statusPageNotifications.length}. All notification reporting descriptors: ` +
-                  `${JSON.stringify(toolExecutionNotifications)}.`
-              );
-            }
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-indirect-tracing-workaround.yml

@@ -1,104 +1,104 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: workaround for indirect tracing'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: go-indirect-tracing-workaround-${{github.ref}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   go-indirect-tracing-workaround:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: default
+        - os: ubuntu-latest
+          version: stable-v2.14.6
     name: 'Go: workaround for indirect tracing'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: go
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Build code
-        run: go build main.go
-      - uses: ./../action/analyze
-      - run: |
-          if [[ -z "${CODEQL_ACTION_GO_BINARY}" ]]; then
-            echo "Expected the workaround for indirect tracing of static binaries to trigger, but the" \
-              "CODEQL_ACTION_GO_BINARY environment variable is not set."
-            exit 1
-          fi
-          if [[ ! -f "${CODEQL_ACTION_GO_BINARY}" ]]; then
-            echo "CODEQL_ACTION_GO_BINARY is set, but the corresponding script does not exist."
-            exit 1
-          fi
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: actions/setup-go@v5
+      with:
+      # We need a Go version that ships with statically linked binaries on Linux
+        go-version: '>=1.21.0'
+    - uses: ./../action/init
+      with:
+        languages: go
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - name: Build code
+      shell: bash
+      run: go build main.go
+    - uses: ./../action/analyze
+      with:
+        upload-database: false
+    - shell: bash
+      run: |
+        if [[ -z "${CODEQL_ACTION_GO_BINARY}" ]]; then
+          echo "Expected the workaround for indirect tracing of static binaries to trigger, but the" \
+            "CODEQL_ACTION_GO_BINARY environment variable is not set."
+          exit 1
+        fi
+        if [[ ! -f "${CODEQL_ACTION_GO_BINARY}" ]]; then
+          echo "CODEQL_ACTION_GO_BINARY is set, but the corresponding script does not exist."
+          exit 1
+        fi
 
 
-          # Once we start running Bash 4.2 in all environments, we can replace the
-          # `! -z` flag with the more elegant `-v` which confirms that the variable
-          # is actually unset and not potentially set to a blank value.
-          if [[ ! -z "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" ]]; then
-            echo "Expected the Go autobuilder not to be run, but the" \
-              "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was set."
-            exit 1
-          fi
-          cd "$RUNNER_TEMP/codeql_databases"
-          if [[ ! -d go ]]; then
-            echo "Did not find a Go database"
-            exit 1
-          fi
+        # Once we start running Bash 4.2 in all environments, we can replace the
+        # `! -z` flag with the more elegant `-v` which confirms that the variable
+        # is actually unset and not potentially set to a blank value.
+        if [[ ! -z "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" ]]; then
+          echo "Expected the Go autobuilder not to be run, but the" \
+            "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was set."
+          exit 1
+        fi
+        cd "$RUNNER_TEMP/codeql_databases"
+        if [[ ! -d go ]]; then
+          echo "Did not find a Go database"
+          exit 1
+        fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-tracing-autobuilder.yml

@@ -1,110 +1,114 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: tracing with autobuilder step'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: go-tracing-autobuilder-${{github.ref}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   go-tracing-autobuilder:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: stable-v2.19.4
-          - os: ubuntu-latest
-            version: stable-v2.20.7
-          - os: ubuntu-latest
-            version: stable-v2.21.4
-          - os: ubuntu-latest
-            version: stable-v2.22.4
-          - os: ubuntu-latest
-            version: stable-v2.23.9
-          - os: ubuntu-latest
-            version: stable-v2.24.3
-          - os: ubuntu-latest
-            version: default
-          - os: ubuntu-latest
-            version: linked
-          - os: macos-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: stable-20221211
+        - os: macos-latest
+          version: stable-20221211
+        - os: ubuntu-latest
+          version: stable-20230418
+        - os: macos-latest
+          version: stable-20230418
+        - os: ubuntu-latest
+          version: stable-v2.13.5
+        - os: macos-latest
+          version: stable-v2.13.5
+        - os: ubuntu-latest
+          version: stable-v2.14.6
+        - os: macos-latest
+          version: stable-v2.14.6
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
     name: 'Go: tracing with autobuilder step'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: go
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/autobuild
-      - uses: ./../action/analyze
-      - run: |
-          if [[ "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" != true ]]; then
-            echo "Expected the Go autobuilder to be run, but the" \
-              "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was not true."
-            exit 1
-          fi
-          cd "$RUNNER_TEMP/codeql_databases"
-          if [[ ! -d go ]]; then
-            echo "Did not find a Go database"
-            exit 1
-          fi
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: actions/setup-go@v5
+      with:
+        go-version: ~1.21.1
+    - uses: ./../action/init
+      with:
+        languages: go
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/autobuild
+    - uses: ./../action/analyze
+      with:
+        upload-database: false
+    - shell: bash
+      run: |
+        if [[ "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" != true ]]; then
+          echo "Expected the Go autobuilder to be run, but the" \
+            "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was not true."
+          exit 1
+        fi
+        cd "$RUNNER_TEMP/codeql_databases"
+        if [[ ! -d go ]]; then
+          echo "Did not find a Go database"
+          exit 1
+        fi
     env:
       DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-tracing-custom-build-steps.yml

@@ -1,113 +1,118 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: tracing with custom build steps'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: go-tracing-custom-build-steps-${{github.ref}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   go-tracing-custom-build-steps:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: stable-v2.19.4
-          - os: ubuntu-latest
-            version: stable-v2.20.7
-          - os: ubuntu-latest
-            version: stable-v2.21.4
-          - os: ubuntu-latest
-            version: stable-v2.22.4
-          - os: ubuntu-latest
-            version: stable-v2.23.9
-          - os: ubuntu-latest
-            version: stable-v2.24.3
-          - os: ubuntu-latest
-            version: default
-          - os: ubuntu-latest
-            version: linked
-          - os: macos-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: stable-20221211
+        - os: macos-latest
+          version: stable-20221211
+        - os: ubuntu-latest
+          version: stable-20230418
+        - os: macos-latest
+          version: stable-20230418
+        - os: ubuntu-latest
+          version: stable-v2.13.5
+        - os: macos-latest
+          version: stable-v2.13.5
+        - os: ubuntu-latest
+          version: stable-v2.14.6
+        - os: macos-latest
+          version: stable-v2.14.6
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
     name: 'Go: tracing with custom build steps'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: go
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Build code
-        run: go build main.go
-      - uses: ./../action/analyze
-      - run: |
-          # Once we start running Bash 4.2 in all environments, we can replace the
-          # `! -z` flag with the more elegant `-v` which confirms that the variable
-          # is actually unset and not potentially set to a blank value.
-          if [[ ! -z "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" ]]; then
-            echo "Expected the Go autobuilder not to be run, but the" \
-              "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was set."
-            exit 1
-          fi
-          cd "$RUNNER_TEMP/codeql_databases"
-          if [[ ! -d go ]]; then
-            echo "Did not find a Go database"
-            exit 1
-          fi
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: actions/setup-go@v5
+      with:
+        go-version: ~1.21.1
+    - uses: ./../action/init
+      with:
+        languages: go
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - name: Build code
+      shell: bash
+      run: go build main.go
+    - uses: ./../action/analyze
+      with:
+        upload-database: false
+    - shell: bash
+      run: |
+        # Once we start running Bash 4.2 in all environments, we can replace the
+        # `! -z` flag with the more elegant `-v` which confirms that the variable
+        # is actually unset and not potentially set to a blank value.
+        if [[ ! -z "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" ]]; then
+          echo "Expected the Go autobuilder not to be run, but the" \
+            "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was set."
+          exit 1
+        fi
+        cd "$RUNNER_TEMP/codeql_databases"
+        if [[ ! -d go ]]; then
+          echo "Did not find a Go database"
+          exit 1
+        fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-tracing-legacy-workflow.yml

@@ -1,104 +1,108 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: tracing with legacy workflow'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: go-tracing-legacy-workflow-${{github.ref}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   go-tracing-legacy-workflow:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: stable-v2.19.4
-          - os: ubuntu-latest
-            version: stable-v2.20.7
-          - os: ubuntu-latest
-            version: stable-v2.21.4
-          - os: ubuntu-latest
-            version: stable-v2.22.4
-          - os: ubuntu-latest
-            version: stable-v2.23.9
-          - os: ubuntu-latest
-            version: stable-v2.24.3
-          - os: ubuntu-latest
-            version: default
-          - os: ubuntu-latest
-            version: linked
-          - os: macos-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: stable-20221211
+        - os: macos-latest
+          version: stable-20221211
+        - os: ubuntu-latest
+          version: stable-20230418
+        - os: macos-latest
+          version: stable-20230418
+        - os: ubuntu-latest
+          version: stable-v2.13.5
+        - os: macos-latest
+          version: stable-v2.13.5
+        - os: ubuntu-latest
+          version: stable-v2.14.6
+        - os: macos-latest
+          version: stable-v2.14.6
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
     name: 'Go: tracing with legacy workflow'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: go
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-      - run: |
-          cd "$RUNNER_TEMP/codeql_databases"
-          if [[ ! -d go ]]; then
-            echo "Did not find a Go database"
-            exit 1
-          fi
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: actions/setup-go@v5
+      with:
+        go-version: ~1.21.1
+    - uses: ./../action/init
+      with:
+        languages: go
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/analyze
+      with:
+        upload-database: false
+    - shell: bash
+      run: |
+        cd "$RUNNER_TEMP/codeql_databases"
+        if [[ ! -d go ]]; then
+          echo "Did not find a Go database"
+          exit 1
+        fi
     env:
       DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go.yml

@@ -1,80 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: Manual Check - go
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-jobs:
-  go-custom-queries:
-    name: 'Go: Custom queries'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-custom-queries.yml
-    with:
-      dotnet-version: ${{ inputs.dotnet-version }}
-      go-version: ${{ inputs.go-version }}
-  go-indirect-tracing-workaround-diagnostic:
-    name: 'Go: diagnostic when Go is changed after init step'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-indirect-tracing-workaround-diagnostic.yml
-    with:
-      go-version: ${{ inputs.go-version }}
-  go-indirect-tracing-workaround-no-file-program:
-    name: 'Go: diagnostic when `file` is not installed'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-indirect-tracing-workaround-no-file-program.yml
-    with:
-      go-version: ${{ inputs.go-version }}
-  go-indirect-tracing-workaround:
-    name: 'Go: workaround for indirect tracing'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-indirect-tracing-workaround.yml
-    with:
-      go-version: ${{ inputs.go-version }}
-  go-tracing-autobuilder:
-    name: 'Go: tracing with autobuilder step'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-tracing-autobuilder.yml
-    with:
-      go-version: ${{ inputs.go-version }}
-  go-tracing-custom-build-steps:
-    name: 'Go: tracing with custom build steps'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-tracing-custom-build-steps.yml
-    with:
-      go-version: ${{ inputs.go-version }}
-  go-tracing-legacy-workflow:
-    name: 'Go: tracing with legacy workflow'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-tracing-legacy-workflow.yml
-    with:
-      go-version: ${{ inputs.go-version }}

.github/workflows/__init-with-registries.yml

@@ -1,119 +1,144 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Download using registries'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: init-with-registries-${{github.ref}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   init-with-registries:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: default
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: windows-latest
+          version: default
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: windows-latest
+          version: latest
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-latest
+          version: nightly-latest
     name: 'Packaging: Download using registries'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       packages: read
+
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Init with registries
-        uses: ./../action/init
-        with:
-          db-location: '${{ runner.temp }}/customDbLocation'
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          config-file: ./.github/codeql/codeql-config-registries.yml
-          languages: javascript
-          registries: |
-            - url: "https://ghcr.io/v2/"
-              packages: "*/*"
-              token: "${{ secrets.GITHUB_TOKEN }}"
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
 
-      - name: Verify packages installed
-        run: |
-          PRIVATE_PACK="$HOME/.codeql/packages/codeql-testing/private-pack"
-          CODEQL_PACK1="$HOME/.codeql/packages/codeql-testing/codeql-pack1"
+        matrix.version == 'stable-20221211' ||
 
-          if [[ -d $PRIVATE_PACK ]]
-          then
-              echo "$PRIVATE_PACK was installed."
-          else
-              echo "::error $PRIVATE_PACK pack was not installed."
-              exit 1
-          fi
+        matrix.version == 'stable-20230418' ||
 
-          if [[ -d $CODEQL_PACK1 ]]
-          then
-              echo "$CODEQL_PACK1 was installed."
-          else
-              echo "::error $CODEQL_PACK1 pack was not installed."
-              exit 1
-          fi
+        matrix.version == 'stable-v2.13.5' ||
 
-      - name: Verify qlconfig.yml file was created
-        run: |
-          QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
-          echo "Expected qlconfig.yml file to be created at $QLCONFIG_PATH"
-          if [[ -f $QLCONFIG_PATH ]]
-          then
-              echo "qlconfig.yml file was created."
-          else
-              echo "::error qlconfig.yml file was not created."
-              exit 1
-          fi
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - name: Init with registries
+      uses: ./../action/init
+      with:
+        db-location: ${{ runner.temp }}/customDbLocation
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+        config-file: ./.github/codeql/codeql-config-registries.yml
+        languages: javascript
+        registries: |
+          - url: "https://ghcr.io/v2/"
+            packages: "*/*"
+            token: "${{ secrets.GITHUB_TOKEN }}"
 
-      - name: Verify contents of qlconfig.yml
-        run: |
-          QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
-          cat $QLCONFIG_PATH | yq -e '.registries[] | select(.url == "https://ghcr.io/v2/") | select(.packages == "*/*")'
-          if [[ $? -eq 0 ]]
-          then
-              echo "Registry was added to qlconfig.yml file."
-          else
-              echo "::error Registry was not added to qlconfig.yml file."
-              echo "Contents of qlconfig.yml file:"
-              cat $QLCONFIG_PATH
-              exit 1
-          fi
+    - name: Verify packages installed
+      shell: bash
+      run: |
+        PRIVATE_PACK="$HOME/.codeql/packages/codeql-testing/private-pack"
+        CODEQL_PACK1="$HOME/.codeql/packages/codeql-testing/codeql-pack1"
+
+        if [[ -d $PRIVATE_PACK ]]
+        then
+            echo "$PRIVATE_PACK was installed."
+        else
+            echo "::error $PRIVATE_PACK pack was not installed."
+            exit 1
+        fi
+
+        if [[ -d $CODEQL_PACK1 ]]
+        then
+            echo "$CODEQL_PACK1 was installed."
+        else
+            echo "::error $CODEQL_PACK1 pack was not installed."
+            exit 1
+        fi
+
+    - name: Verify qlconfig.yml file was created
+      shell: bash
+      run: |
+        QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
+        echo "Expected qlconfig.yml file to be created at $QLCONFIG_PATH"
+        if [[ -f $QLCONFIG_PATH ]]
+        then
+            echo "qlconfig.yml file was created."
+        else
+            echo "::error qlconfig.yml file was not created."
+            exit 1
+        fi
+
+    - name: Verify contents of qlconfig.yml
+    # yq is not available on windows
+      if: runner.os != 'Windows'
+      shell: bash
+      run: |
+        QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
+        cat $QLCONFIG_PATH | yq -e '.registries[] | select(.url == "https://ghcr.io/v2/") | select(.packages == "*/*")'
+        if [[ $? -eq 0 ]]
+        then
+            echo "Registry was added to qlconfig.yml file."
+        else
+            echo "::error Registry was not added to qlconfig.yml file."
+            echo "Contents of qlconfig.yml file:"
+            cat $QLCONFIG_PATH
+            exit 1
+        fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__javascript-source-root.yml

@@ -1,80 +1,91 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Custom source root
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: javascript-source-root-${{github.ref}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   javascript-source-root:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: default
-          - os: ubuntu-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: latest
+        - os: ubuntu-latest
+          version: default
+        - os: ubuntu-latest
+          version: nightly-latest
     name: Custom source root
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Move codeql-action
-        run: |
-          mkdir ../new-source-root
-          mv * ../new-source-root
-      - uses: ./../action/init
-        with:
-          languages: javascript
-          source-root: ../new-source-root
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        with:
-          skip-queries: true
-      - name: Assert database exists
-        run: |
-          cd "$RUNNER_TEMP/codeql_databases"
-          if [[ ! -d javascript ]]; then
-            echo "Did not find a JavaScript database"
-            exit 1
-          fi
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - name: Move codeql-action
+      shell: bash
+      run: |
+        mkdir ../new-source-root
+        mv * ../new-source-root
+    - uses: ./../action/init
+      with:
+        languages: javascript
+        source-root: ../new-source-root
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/analyze
+      with:
+        upload-database: false
+        skip-queries: true
+        upload: never
+    - name: Assert database exists
+      shell: bash
+      run: |
+        cd "$RUNNER_TEMP/codeql_databases"
+        if [[ ! -d javascript ]]; then
+          echo "Did not find a JavaScript database"
+          exit 1
+        fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__job-run-uuid-sarif.yml

@@ -1,81 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Job run UUID added to SARIF
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: job-run-uuid-sarif-${{github.ref}}
-jobs:
-  job-run-uuid-sarif:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: nightly-latest
-    name: Job run UUID added to SARIF
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        id: init
-        with:
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        with:
-          output: '${{ runner.temp }}/results'
-      - name: Upload SARIF
-        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
-        with:
-          name: ${{ matrix.os }}-${{ matrix.version }}.sarif.json
-          path: '${{ runner.temp }}/results/javascript.sarif'
-          retention-days: 7
-      - name: Check results
-        run: |
-          cd "$RUNNER_TEMP/results"
-          actual=$(jq -r '.runs[0].properties.jobRunUuid' javascript.sarif)
-          if [[ "$actual" != "$CODEQL_ACTION_JOB_RUN_UUID" ]]; then
-            echo "Expected SARIF output to contain job run UUID '$CODEQL_ACTION_JOB_RUN_UUID', but found '$actual'."
-            exit 1
-          else
-            echo "Found job run UUID '$actual'."
-          fi
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__language-aliases.yml

@@ -1,72 +1,79 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Language aliases
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: language-aliases-${{github.ref}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   language-aliases:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
+        - os: ubuntu-latest
+          version: latest
     name: Language aliases
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: C#,java-kotlin,typescript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
 
-      - name: 'Check languages'
-        run: |
-          expected_languages="csharp,java,javascript"
-          actual_languages=$(jq -r '.languages | join(",")' "$RUNNER_TEMP"/config)
+        matrix.version == 'stable-20221211' ||
 
-          if [ "$expected_languages" != "$actual_languages" ]; then
-            echo "Resolved languages did not match expected list. " \
-              "Expected languages: $expected_languages. Actual languages: $actual_languages."
-            exit 1
-          fi
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      with:
+        languages: C#,java-kotlin,swift,typescript
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Check languages
+      run: |
+        expected_languages="csharp,java,swift,javascript"
+        actual_languages=$(jq -r '.languages | join(",")' "$RUNNER_TEMP"/config)
+
+        if [ "$expected_languages" != "$actual_languages" ]; then
+          echo "Resolved languages did not match expected list. " \
+            "Expected languages: $expected_languages. Actual languages: $actual_languages."
+          exit 1
+        fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__linux-arm64.yml

@@ -1,106 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Linux Arm64
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: linux-arm64-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
-jobs:
-  linux-arm64:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-24.04-arm
-            version: nightly-latest
-    name: Linux Arm64
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: ${{ env.LANGUAGES }}
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Build code
-        run: ./build.sh
-      - uses: ./../action/analyze
-        with:
-          upload-database: false
-      - name: Assert databases exist
-        run: |
-          cd "$RUNNER_TEMP/codeql_databases"
-          for lang in ${LANGUAGES//,/ }; do
-            if [[ ! -d "$lang" ]]; then
-              echo "Did not find a database for $lang"
-              exit 1
-            fi
-            echo "Found database for $lang"
-          done
-    env:
-      LANGUAGES: cpp,csharp,go,java,javascript,python,ruby
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__local-bundle.yml

@@ -1,98 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Local CodeQL bundle
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: local-bundle-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
-jobs:
-  local-bundle:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-    name: Local CodeQL bundle
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Fetch latest CodeQL bundle
-        run: |
-          wget https://github.com/github/codeql-action/releases/latest/download/codeql-bundle-linux64.tar.zst
-      - id: init
-        uses: ./../action/init
-        with:
-          # Swift is not supported on Ubuntu so we manually exclude it from the list here
-          languages: cpp,csharp,go,java,javascript,python,ruby
-          tools: ./codeql-bundle-linux64.tar.zst
-      - name: Build code
-        run: ./build.sh
-      - uses: ./../action/analyze
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__multi-language-autodetect.yml

@@ -1,196 +1,159 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Multi-language repository
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: multi-language-autodetect-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   multi-language-autodetect:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: stable-v2.19.4
-          - os: macos-15-xlarge
-            version: stable-v2.19.4
-          - os: ubuntu-latest
-            version: stable-v2.20.7
-          - os: macos-15-xlarge
-            version: stable-v2.20.7
-          - os: ubuntu-latest
-            version: stable-v2.21.4
-          - os: macos-15-xlarge
-            version: stable-v2.21.4
-          - os: ubuntu-latest
-            version: stable-v2.22.4
-          - os: macos-15-xlarge
-            version: stable-v2.22.4
-          - os: ubuntu-latest
-            version: stable-v2.23.9
-          - os: macos-latest-xlarge
-            version: stable-v2.23.9
-          - os: ubuntu-latest
-            version: stable-v2.24.3
-          - os: macos-latest-xlarge
-            version: stable-v2.24.3
-          - os: ubuntu-latest
-            version: default
-          - os: macos-latest-xlarge
-            version: default
-          - os: ubuntu-latest
-            version: linked
-          - os: macos-latest-xlarge
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
-          - os: macos-latest-xlarge
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: stable-20221211
+        - os: macos-latest
+          version: stable-20221211
+        - os: ubuntu-latest
+          version: stable-20230418
+        - os: macos-latest
+          version: stable-20230418
+        - os: ubuntu-latest
+          version: stable-v2.13.5
+        - os: macos-latest
+          version: stable-v2.13.5
+        - os: ubuntu-latest
+          version: stable-v2.14.6
+        - os: macos-latest
+          version: stable-v2.14.6
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
     name: Multi-language repository
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Install Python 3.13 for older CLI versions
-        # We need Python 3.13 for older CLI versions because they are not compatible with Python 3.14 or newer.
-        # See https://github.com/github/codeql-action/pull/3212
-        if: matrix.version != 'nightly-latest' && matrix.version != 'linked'
-        uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
-        with:
-          python-version: '3.13'
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
 
-      - name: Use Xcode 16
-        # Only the older CodeQL CLI versions need Xcode 16, and these run on macOS 15.
-        if: matrix.os == 'macos-15-xlarge'
-        run: sudo xcode-select -s "/Applications/Xcode_16.app"
+        matrix.version == 'stable-20221211' ||
 
-      - uses: ./../action/init
-        id: init
-        with:
-          db-location: '${{ runner.temp }}/customDbLocation'
-          languages: ${{ runner.os == 'Linux' && 'cpp,csharp,go,java,javascript,python,ruby' || '' }}
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
+        matrix.version == 'stable-20230418' ||
 
-      - name: Build code
-        run: ./build.sh
+        matrix.version == 'stable-v2.13.5' ||
 
-      - uses: ./../action/analyze
-        id: analysis
-        with:
-          upload-database: false
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      id: init
+      with:
+        db-location: ${{ runner.temp }}/customDbLocation
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
 
-      - name: Check language autodetect for all languages excluding Swift
-        run: |
-          CPP_DB=${{ fromJson(steps.analysis.outputs.db-locations).cpp }}
-          if [[ ! -d $CPP_DB ]] || [[ ! $CPP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-            echo "Did not create a database for CPP, or created it in the wrong location."
-            exit 1
-          fi
-          CSHARP_DB=${{ fromJson(steps.analysis.outputs.db-locations).csharp }}
-          if [[ ! -d $CSHARP_DB ]] || [[ ! $CSHARP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-            echo "Did not create a database for C Sharp, or created it in the wrong location."
-            exit 1
-          fi
-          GO_DB=${{ fromJson(steps.analysis.outputs.db-locations).go }}
-          if [[ ! -d $GO_DB ]] || [[ ! $GO_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-            echo "Did not create a database for Go, or created it in the wrong location."
-            exit 1
-          fi
-          JAVA_DB=${{ fromJson(steps.analysis.outputs.db-locations).java }}
-          if [[ ! -d $JAVA_DB ]] || [[ ! $JAVA_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-            echo "Did not create a database for Java, or created it in the wrong location."
-            exit 1
-          fi
-          JAVASCRIPT_DB=${{ fromJson(steps.analysis.outputs.db-locations).javascript }}
-          if [[ ! -d $JAVASCRIPT_DB ]] || [[ ! $JAVASCRIPT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-            echo "Did not create a database for Javascript, or created it in the wrong location."
-            exit 1
-          fi
-          PYTHON_DB=${{ fromJson(steps.analysis.outputs.db-locations).python }}
-          if [[ ! -d $PYTHON_DB ]] || [[ ! $PYTHON_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-            echo "Did not create a database for Python, or created it in the wrong location."
-            exit 1
-          fi
-          RUBY_DB=${{ fromJson(steps.analysis.outputs.db-locations).ruby }}
-          if [[ ! -d $RUBY_DB ]] || [[ ! $RUBY_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-            echo "Did not create a database for Ruby, or created it in the wrong location."
-            exit 1
-          fi
+    - uses: ./../action/.github/actions/setup-swift
+      with:
+        codeql-path: ${{ steps.init.outputs.codeql-path }}
 
-      - name: Check language autodetect for Swift on macOS
-        if: runner.os == 'macOS'
-        run: |
-          SWIFT_DB=${{ fromJson(steps.analysis.outputs.db-locations).swift }}
-          if [[ ! -d $SWIFT_DB ]] || [[ ! $SWIFT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-            echo "Did not create a database for Swift, or created it in the wrong location."
-            exit 1
-          fi
+    - name: Build code
+      shell: bash
+      run: ./build.sh
+
+    - uses: ./../action/analyze
+      id: analysis
+      with:
+        upload-database: false
+
+    - name: Check language autodetect for all languages excluding Swift
+      shell: bash
+      run: |
+        CPP_DB=${{ fromJson(steps.analysis.outputs.db-locations).cpp }}
+        if [[ ! -d $CPP_DB ]] || [[ ! $CPP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+          echo "Did not create a database for CPP, or created it in the wrong location."
+          exit 1
+        fi
+        CSHARP_DB=${{ fromJson(steps.analysis.outputs.db-locations).csharp }}
+        if [[ ! -d $CSHARP_DB ]] || [[ ! $CSHARP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+          echo "Did not create a database for C Sharp, or created it in the wrong location."
+          exit 1
+        fi
+        GO_DB=${{ fromJson(steps.analysis.outputs.db-locations).go }}
+        if [[ ! -d $GO_DB ]] || [[ ! $GO_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+          echo "Did not create a database for Go, or created it in the wrong location."
+          exit 1
+        fi
+        JAVA_DB=${{ fromJson(steps.analysis.outputs.db-locations).java }}
+        if [[ ! -d $JAVA_DB ]] || [[ ! $JAVA_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+          echo "Did not create a database for Java, or created it in the wrong location."
+          exit 1
+        fi
+        JAVASCRIPT_DB=${{ fromJson(steps.analysis.outputs.db-locations).javascript }}
+        if [[ ! -d $JAVASCRIPT_DB ]] || [[ ! $JAVASCRIPT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+          echo "Did not create a database for Javascript, or created it in the wrong location."
+          exit 1
+        fi
+        PYTHON_DB=${{ fromJson(steps.analysis.outputs.db-locations).python }}
+        if [[ ! -d $PYTHON_DB ]] || [[ ! $PYTHON_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+          echo "Did not create a database for Python, or created it in the wrong location."
+          exit 1
+        fi
+        RUBY_DB=${{ fromJson(steps.analysis.outputs.db-locations).ruby }}
+        if [[ ! -d $RUBY_DB ]] || [[ ! $RUBY_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+          echo "Did not create a database for Ruby, or created it in the wrong location."
+          exit 1
+        fi
+
+    - name: Check language autodetect for Swift
+      if: >-
+        env.CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT == 'true' || 
+            (runner.os != 'Windows' && matrix.version == 'nightly-latest')
+      shell: bash
+      run: |
+        SWIFT_DB=${{ fromJson(steps.analysis.outputs.db-locations).swift }}
+        if [[ ! -d $SWIFT_DB ]] || [[ ! $SWIFT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+          echo "Did not create a database for Swift, or created it in the wrong location."
+          exit 1
+        fi
     env:
-      CODEQL_ACTION_CLEANUP_TOOLCACHE_BUNDLES: true
-      CODEQL_ACTION_RESOLVE_SUPPORTED_LANGUAGES_USING_CLI: true
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__overlay-init-fallback.yml

@@ -1,76 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Overlay database init fallback
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: overlay-init-fallback-${{github.ref}}
-jobs:
-  overlay-init-fallback:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
-    name: Overlay database init fallback
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: actions # Any language without overlay support will do
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-        env:
-          CODEQL_OVERLAY_DATABASE_MODE: overlay-base
-      - uses: ./../action/analyze
-        id: analysis
-        with:
-          upload-database: false
-      - name: Check database
-        run: |
-          cd "$RUNNER_TEMP/codeql_databases/actions"
-          if ! grep -q 'overlayBaseDatabase: false' codeql-database.yml ; then
-            echo "This test needs to be updated to use a non-overlay language."
-            exit 1
-          fi
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-codescanning-config-inputs-js.yml

@@ -1,130 +1,116 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Config and input passed to the CLI'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: packaging-codescanning-config-inputs-js-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   packaging-codescanning-config-inputs-js:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: default
-          - os: ubuntu-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: windows-latest
+          version: latest
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: windows-latest
+          version: default
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-latest
+          version: nightly-latest
     name: 'Packaging: Config and input passed to the CLI'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install Node.js
-        uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
-        with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          config-file: '.github/codeql/codeql-config-packaging3.yml'
-          packs: +codeql-testing/codeql-pack1@1.0.0
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Build code
-        run: ./build.sh
-      - uses: ./../action/analyze
-        with:
-          output: '${{ runner.temp }}/results'
-          upload-database: false
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
 
-      - name: Check results
-        uses: ./../action/.github/actions/check-sarif
-        with:
-          sarif-file: ${{ runner.temp }}/results/javascript.sarif
-          queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
-          queries-not-run: foo,bar
+        matrix.version == 'stable-20221211' ||
 
-      - name: Assert Results
-        run: |
-          cd "$RUNNER_TEMP/results"
-          # We should have 4 hits from these rules
-          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+        matrix.version == 'stable-20230418' ||
 
-          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
-          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
-          echo "Found matching rules '$RULES'"
-          if [ "$RULES" != "$EXPECTED_RULES" ]; then
-            echo "Did not match expected rules '$EXPECTED_RULES'."
-            exit 1
-          fi
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      with:
+        config-file: .github/codeql/codeql-config-packaging3.yml
+        packs: +codeql-testing/codeql-pack1@1.0.0
+        languages: javascript
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - name: Build code
+      shell: bash
+      run: ./build.sh
+    - uses: ./../action/analyze
+      with:
+        output: ${{ runner.temp }}/results
+        upload-database: false
+
+    - name: Check results
+      uses: ./../action/.github/actions/check-sarif
+      with:
+        sarif-file: ${{ runner.temp }}/results/javascript.sarif
+        queries-run: 
+          javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+        queries-not-run: foo,bar
+
+    - name: Assert Results
+      shell: bash
+      run: |
+        cd "$RUNNER_TEMP/results"
+        # We should have 4 hits from these rules
+        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+        # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+        echo "Found matching rules '$RULES'"
+        if [ "$RULES" != "$EXPECTED_RULES" ]; then
+          echo "Did not match expected rules '$EXPECTED_RULES'."
+          exit 1
+        fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-config-inputs-js.yml

@@ -1,130 +1,116 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Config and input'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: packaging-config-inputs-js-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   packaging-config-inputs-js:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: default
-          - os: ubuntu-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: windows-latest
+          version: latest
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: windows-latest
+          version: default
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-latest
+          version: nightly-latest
     name: 'Packaging: Config and input'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install Node.js
-        uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
-        with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          config-file: '.github/codeql/codeql-config-packaging3.yml'
-          packs: +codeql-testing/codeql-pack1@1.0.0
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Build code
-        run: ./build.sh
-      - uses: ./../action/analyze
-        with:
-          output: '${{ runner.temp }}/results'
-          upload-database: false
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
 
-      - name: Check results
-        uses: ./../action/.github/actions/check-sarif
-        with:
-          sarif-file: ${{ runner.temp }}/results/javascript.sarif
-          queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
-          queries-not-run: foo,bar
+        matrix.version == 'stable-20221211' ||
 
-      - name: Assert Results
-        run: |
-          cd "$RUNNER_TEMP/results"
-          # We should have 4 hits from these rules
-          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+        matrix.version == 'stable-20230418' ||
 
-          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
-          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
-          echo "Found matching rules '$RULES'"
-          if [ "$RULES" != "$EXPECTED_RULES" ]; then
-            echo "Did not match expected rules '$EXPECTED_RULES'."
-            exit 1
-          fi
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      with:
+        config-file: .github/codeql/codeql-config-packaging3.yml
+        packs: +codeql-testing/codeql-pack1@1.0.0
+        languages: javascript
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - name: Build code
+      shell: bash
+      run: ./build.sh
+    - uses: ./../action/analyze
+      with:
+        output: ${{ runner.temp }}/results
+        upload-database: false
+
+    - name: Check results
+      uses: ./../action/.github/actions/check-sarif
+      with:
+        sarif-file: ${{ runner.temp }}/results/javascript.sarif
+        queries-run: 
+          javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+        queries-not-run: foo,bar
+
+    - name: Assert Results
+      shell: bash
+      run: |
+        cd "$RUNNER_TEMP/results"
+        # We should have 4 hits from these rules
+        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+        # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+        echo "Found matching rules '$RULES'"
+        if [ "$RULES" != "$EXPECTED_RULES" ]; then
+          echo "Did not match expected rules '$EXPECTED_RULES'."
+          exit 1
+        fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-config-js.yml

@@ -1,129 +1,115 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Config file'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: packaging-config-js-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   packaging-config-js:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: default
-          - os: ubuntu-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: windows-latest
+          version: latest
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: windows-latest
+          version: default
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-latest
+          version: nightly-latest
     name: 'Packaging: Config file'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install Node.js
-        uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
-        with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          config-file: '.github/codeql/codeql-config-packaging.yml'
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Build code
-        run: ./build.sh
-      - uses: ./../action/analyze
-        with:
-          output: '${{ runner.temp }}/results'
-          upload-database: false
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
 
-      - name: Check results
-        uses: ./../action/.github/actions/check-sarif
-        with:
-          sarif-file: ${{ runner.temp }}/results/javascript.sarif
-          queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
-          queries-not-run: foo,bar
+        matrix.version == 'stable-20221211' ||
 
-      - name: Assert Results
-        run: |
-          cd "$RUNNER_TEMP/results"
-          # We should have 4 hits from these rules
-          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+        matrix.version == 'stable-20230418' ||
 
-          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
-          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
-          echo "Found matching rules '$RULES'"
-          if [ "$RULES" != "$EXPECTED_RULES" ]; then
-            echo "Did not match expected rules '$EXPECTED_RULES'."
-            exit 1
-          fi
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      with:
+        config-file: .github/codeql/codeql-config-packaging.yml
+        languages: javascript
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - name: Build code
+      shell: bash
+      run: ./build.sh
+    - uses: ./../action/analyze
+      with:
+        output: ${{ runner.temp }}/results
+        upload-database: false
+
+    - name: Check results
+      uses: ./../action/.github/actions/check-sarif
+      with:
+        sarif-file: ${{ runner.temp }}/results/javascript.sarif
+        queries-run: 
+          javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+        queries-not-run: foo,bar
+
+    - name: Assert Results
+      shell: bash
+      run: |
+        cd "$RUNNER_TEMP/results"
+        # We should have 4 hits from these rules
+        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+        # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+        echo "Found matching rules '$RULES'"
+        if [ "$RULES" != "$EXPECTED_RULES" ]; then
+          echo "Did not match expected rules '$EXPECTED_RULES'."
+          exit 1
+        fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-inputs-js.yml

@@ -1,129 +1,115 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Action input'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: packaging-inputs-js-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   packaging-inputs-js:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: default
-          - os: ubuntu-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: windows-latest
+          version: latest
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: windows-latest
+          version: default
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-latest
+          version: nightly-latest
     name: 'Packaging: Action input'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install Node.js
-        uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
-        with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          config-file: '.github/codeql/codeql-config-packaging2.yml'
-          languages: javascript
-          packs: codeql-testing/codeql-pack1@1.0.0, codeql-testing/codeql-pack2, codeql-testing/codeql-pack3:other-query.ql
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Build code
-        run: ./build.sh
-      - uses: ./../action/analyze
-        with:
-          output: '${{ runner.temp }}/results'
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
 
-      - name: Check results
-        uses: ./../action/.github/actions/check-sarif
-        with:
-          sarif-file: ${{ runner.temp }}/results/javascript.sarif
-          queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
-          queries-not-run: foo,bar
+        matrix.version == 'stable-20221211' ||
 
-      - name: Assert Results
-        run: |
-          cd "$RUNNER_TEMP/results"
-          # We should have 4 hits from these rules
-          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+        matrix.version == 'stable-20230418' ||
 
-          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
-          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
-          echo "Found matching rules '$RULES'"
-          if [ "$RULES" != "$EXPECTED_RULES" ]; then
-            echo "Did not match expected rules '$EXPECTED_RULES'."
-            exit 1
-          fi
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      with:
+        config-file: .github/codeql/codeql-config-packaging2.yml
+        languages: javascript
+        packs: codeql-testing/codeql-pack1@1.0.0, codeql-testing/codeql-pack2, codeql-testing/codeql-pack3:other-query.ql
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - name: Build code
+      shell: bash
+      run: ./build.sh
+    - uses: ./../action/analyze
+      with:
+        output: ${{ runner.temp }}/results
+
+    - name: Check results
+      uses: ./../action/.github/actions/check-sarif
+      with:
+        sarif-file: ${{ runner.temp }}/results/javascript.sarif
+        queries-run: 
+          javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+        queries-not-run: foo,bar
+
+    - name: Assert Results
+      shell: bash
+      run: |
+        cd "$RUNNER_TEMP/results"
+        # We should have 4 hits from these rules
+        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+        # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+        echo "Found matching rules '$RULES'"
+        if [ "$RULES" != "$EXPECTED_RULES" ]; then
+          echo "Did not match expected rules '$EXPECTED_RULES'."
+          exit 1
+        fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__per-language-bundle-validation.yml

@@ -1,164 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Per-language bundles
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: per-language-bundle-validation-${{github.ref}}
-jobs:
-  per-language-bundle-validation:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - language: actions
-            os: ubuntu-latest
-            version: nightly-latest
-            expected-extractors: actions javascript
-          - language: cpp
-            os: ubuntu-latest
-            version: nightly-latest
-            build-mode: manual
-            build-command: gcc -o main main.c
-          - language: csharp
-            os: ubuntu-latest
-            version: nightly-latest
-            build-mode: none
-          - language: go
-            os: ubuntu-latest
-            version: nightly-latest
-            build-mode: autobuild
-          - language: java
-            os: ubuntu-latest
-            version: nightly-latest
-            build-mode: none
-          - language: javascript
-            os: ubuntu-latest
-            version: nightly-latest
-          - language: python
-            os: ubuntu-latest
-            version: nightly-latest
-          - language: ruby
-            os: ubuntu-latest
-            version: nightly-latest
-          - language: rust
-            os: ubuntu-latest
-            version: nightly-latest
-          - language: swift
-            os: macos-latest-xlarge
-            version: nightly-latest
-            build-mode: autobuild
-    name: Per-language bundles
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        id: init
-        with:
-          languages: ${{ matrix.language }}
-          build-mode: ${{ matrix['build-mode'] }}
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Check that the bundle contains only the expected extractors
-        env:
-          CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
-          LANGUAGE: ${{ matrix.language }}
-          EXPECTED_EXTRACTORS: ${{ matrix['expected-extractors'] || matrix.language }}
-        run: |
-          extractors="$("$CODEQL_PATH" resolve languages --format=json | jq -r 'keys[]')"
-          echo "Extractors in the bundle:"
-          echo "$extractors"
-          echo "Expected: $EXPECTED_EXTRACTORS"
-
-          for expected in $EXPECTED_EXTRACTORS; do
-            if ! echo "$extractors" | grep -qx "$expected"; then
-              echo "::error::The ${LANGUAGE} bundle does not contain the ${expected} extractor."
-              exit 1
-            fi
-          done
-
-          # If the bundle contained extractors beyond those the language needs, then it would not
-          # have been trimmed, and this job would be silently validating the combined bundle.
-          for other in actions cpp csharp go java javascript python ruby rust swift; do
-            if echo "$EXPECTED_EXTRACTORS" | grep -qw "$other"; then
-              continue
-            fi
-            if echo "$extractors" | grep -qx "$other"; then
-              echo "::error::The ${LANGUAGE} bundle also contains the ${other} extractor, so it is not trimmed."
-              exit 1
-            fi
-          done
-      - name: Check that the bundle was not added to the toolcache
-        env:
-          CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
-        run: |
-          # A bundle that is missing most of its extractors must never be left in the toolcache,
-          # where a later job analyzing a different language could pick it up. The runner image
-          # ships with its own CodeQL in the toolcache, so check where this bundle was extracted to
-          # rather than whether the toolcache contains CodeQL at all.
-          echo "CodeQL is at $CODEQL_PATH"
-          if [[ "$CODEQL_PATH" == "$RUNNER_TOOL_CACHE"/* ]]; then
-            echo "::error::The per-language bundle was added to the toolcache at $CODEQL_PATH."
-            exit 1
-          fi
-          if [[ "$CODEQL_PATH" != "$RUNNER_TEMP"/* ]]; then
-            echo "::error::Expected the per-language bundle to be extracted under $RUNNER_TEMP, but found it at $CODEQL_PATH."
-            exit 1
-          fi
-      - name: Build code
-        if: matrix['build-command']
-        run: ${{ matrix['build-command'] }}
-      - uses: ./../action/analyze
-        id: analysis
-        with:
-          upload-database: false
-      - name: Check that a database was created for the language
-        env:
-          DB_LOCATIONS: ${{ steps.analysis.outputs.db-locations }}
-          LANGUAGE: ${{ matrix.language }}
-        run: |
-          database="$(echo "$DB_LOCATIONS" | jq -r --arg lang "$LANGUAGE" '.[$lang] // empty')"
-          if [ -z "$database" ] || [ ! -d "$database" ]; then
-            echo "::error::No CodeQL database was created for ${LANGUAGE}."
-            echo "Databases: $DB_LOCATIONS"
-            exit 1
-          fi
-          echo "Created a ${LANGUAGE} database at ${database}."
-    env:
-      CODEQL_ACTION_PER_LANGUAGE_BUNDLES: true
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__remote-config.yml

@@ -1,96 +1,114 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Remote config file
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: remote-config-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   remote-config:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: stable-20221211
+        - os: macos-latest
+          version: stable-20221211
+        - os: windows-latest
+          version: stable-20221211
+        - os: ubuntu-latest
+          version: stable-20230418
+        - os: macos-latest
+          version: stable-20230418
+        - os: windows-latest
+          version: stable-20230418
+        - os: ubuntu-latest
+          version: stable-v2.13.5
+        - os: macos-latest
+          version: stable-v2.13.5
+        - os: windows-latest
+          version: stable-v2.13.5
+        - os: ubuntu-latest
+          version: stable-v2.14.6
+        - os: macos-latest
+          version: stable-v2.14.6
+        - os: windows-latest
+          version: stable-v2.14.6
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: windows-latest
+          version: default
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: windows-latest
+          version: latest
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-latest
+          version: nightly-latest
     name: Remote config file
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          languages: cpp,csharp,java,javascript,python
-          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{ github.sha }}
-      - name: Build code
-        run: ./build.sh
-      - uses: ./../action/analyze
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      with:
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+        languages: cpp,csharp,java,javascript,python
+        config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
+          github.sha }}
+    - name: Build code
+      shell: bash
+      run: ./build.sh
+    - uses: ./../action/analyze
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__resolve-environment-action.yml

@@ -1,85 +1,113 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Resolve environment
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: resolve-environment-action-${{github.ref}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   resolve-environment-action:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: default
-          - os: ubuntu-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: stable-v2.13.4
+        - os: macos-latest
+          version: stable-v2.13.4
+        - os: windows-latest
+          version: stable-v2.13.4
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: windows-latest
+          version: default
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: windows-latest
+          version: latest
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-latest
+          version: nightly-latest
     name: Resolve environment
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: go,javascript-typescript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
 
-      - name: Resolve environment for Go
-        uses: ./../action/resolve-environment
-        id: resolve-environment-go
-        with:
-          language: go
+        matrix.version == 'stable-20221211' ||
 
-      - name: Fail if Go configuration missing
-        if: (!fromJSON(steps.resolve-environment-go.outputs.environment).configuration.go)
-        run: exit 1
+        matrix.version == 'stable-20230418' ||
 
-      - name: Resolve environment for JavaScript/TypeScript
-        uses: ./../action/resolve-environment
-        id: resolve-environment-js
-        with:
-          language: javascript-typescript
+        matrix.version == 'stable-v2.13.5' ||
 
-      - name: Fail if JavaScript/TypeScript configuration present
-        if: fromJSON(steps.resolve-environment-js.outputs.environment).configuration.javascript
-        run: exit 1
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      with:
+        languages: ${{ matrix.version == 'stable-v2.13.4' && 'go' || 'go,javascript-typescript'
+          }}
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Resolve environment for Go
+      uses: ./../action/resolve-environment
+      id: resolve-environment-go
+      with:
+        language: go
+
+    - name: Fail if Go configuration missing
+      if: (!fromJSON(steps.resolve-environment-go.outputs.environment).configuration.go)
+      run: exit 1
+
+    - name: Resolve environment for JavaScript/TypeScript
+      if: matrix.version != 'stable-v2.13.4'
+      uses: ./../action/resolve-environment
+      id: resolve-environment-js
+      with:
+        language: javascript-typescript
+
+    - name: Fail if JavaScript/TypeScript configuration present
+      if: matrix.version != 'stable-v2.13.4' && 
+        fromJSON(steps.resolve-environment-js.outputs.environment).configuration.javascript
+      run: exit 1
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__rubocop-multi-language.yml

@@ -1,74 +1,84 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - RuboCop multi-language
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: rubocop-multi-language-${{github.ref}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   rubocop-multi-language:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: default
+        - os: ubuntu-latest
+          version: default
     name: RuboCop multi-language
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Set up Ruby
-        uses: ruby/setup-ruby@95ef2b042f9d7a56d8268cba8559e2842e2ad01b # v1.321.0
-        with:
-          ruby-version: 2.6
-      - name: Install Code Scanning integration
-        run: bundle add code-scanning-rubocop --version 0.3.0 --skip-install
-      - name: Install dependencies
-        run: bundle install
-      - name: RuboCop run
-        run: |
-          bash -c "
-            bundle exec rubocop --require code_scanning --format CodeScanning::SarifFormatter -o rubocop.sarif
-            [[ $? -ne 2 ]]
-          "
-      - uses: ./../action/upload-sarif
-        with:
-          sarif_file: rubocop.sarif
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - name: Set up Ruby
+      uses: ruby/setup-ruby@v1
+      with:
+        ruby-version: 2.6
+    - name: Install Code Scanning integration
+      shell: bash
+      run: bundle add code-scanning-rubocop --version 0.3.0 --skip-install
+    - name: Install dependencies
+      shell: bash
+      run: bundle install
+    - name: RuboCop run
+      shell: bash
+      run: |
+        bash -c "
+          bundle exec rubocop --require code_scanning --format CodeScanning::SarifFormatter -o rubocop.sarif
+          [[ $? -ne 2 ]]
+        "
+    - uses: ./../action/upload-sarif
+      with:
+        sarif_file: rubocop.sarif
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__ruby.yml

@@ -1,82 +1,90 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Ruby analysis
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: ruby-${{github.ref}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   ruby:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
-          - os: macos-latest
-            version: linked
-          - os: ubuntu-latest
-            version: default
-          - os: macos-latest
-            version: default
-          - os: ubuntu-latest
-            version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
     name: Ruby analysis
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: ruby
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        id: analysis
-        with:
-          upload-database: false
-      - name: Check database
-        run: |
-          RUBY_DB="${{ fromJson(steps.analysis.outputs.db-locations).ruby }}"
-          if [[ ! -d "$RUBY_DB" ]]; then
-            echo "Did not create a database for Ruby."
-            exit 1
-          fi
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      with:
+        languages: ruby
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/analyze
+      id: analysis
+      with:
+        upload-database: false
+    - name: Check database
+      shell: bash
+      run: |
+        RUBY_DB="${{ fromJson(steps.analysis.outputs.db-locations).ruby }}"
+        if [[ ! -d "$RUBY_DB" ]]; then
+          echo "Did not create a database for Ruby."
+          exit 1
+        fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__rust.yml

@@ -1,80 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Rust analysis
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: rust-${{github.ref}}
-jobs:
-  rust:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: stable-v2.19.4
-          - os: ubuntu-latest
-            version: stable-v2.22.1
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: default
-          - os: ubuntu-latest
-            version: nightly-latest
-    name: Rust analysis
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: rust
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        id: analysis
-        with:
-          upload-database: false
-      - name: Check database
-        run: |
-          RUST_DB="${{ fromJson(steps.analysis.outputs.db-locations).rust }}"
-          if [[ ! -d "$RUST_DB" ]]; then
-            echo "Did not create a database for Rust."
-            exit 1
-          fi
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__scaling-reserved-ram.yml

@@ -0,0 +1,109 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Scaling reserved RAM
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+jobs:
+  scaling-reserved-ram:
+    strategy:
+      matrix:
+        include:
+        - os: ubuntu-latest
+          version: stable-20221211
+        - os: macos-latest
+          version: stable-20221211
+        - os: ubuntu-latest
+          version: stable-20230418
+        - os: macos-latest
+          version: stable-20230418
+        - os: ubuntu-latest
+          version: stable-v2.13.5
+        - os: macos-latest
+          version: stable-v2.13.5
+        - os: ubuntu-latest
+          version: stable-v2.14.6
+        - os: macos-latest
+          version: stable-v2.14.6
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+    name: Scaling reserved RAM
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      id: init
+      with:
+        db-location: ${{ runner.temp }}/customDbLocation
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - uses: ./../action/.github/actions/setup-swift
+      with:
+        codeql-path: ${{ steps.init.outputs.codeql-path }}
+
+    - name: Build code
+      shell: bash
+      run: ./build.sh
+
+    - uses: ./../action/analyze
+      id: analysis
+      with:
+        upload-database: false
+    env:
+      CODEQL_ACTION_SCALING_RESERVED_RAM: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__split-workflow.yml

@@ -1,133 +1,114 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Split workflow
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: split-workflow-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   split-workflow:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
-          - os: macos-latest
-            version: linked
-          - os: ubuntu-latest
-            version: default
-          - os: macos-latest
-            version: default
-          - os: ubuntu-latest
-            version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
     name: Split workflow
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          config-file: '.github/codeql/codeql-config-packaging3.yml'
-          packs: +codeql-testing/codeql-pack1@1.0.0
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Build code
-        run: ./build.sh
-      - uses: ./../action/analyze
-        with:
-          skip-queries: true
-          output: '${{ runner.temp }}/results'
-          upload-database: false
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
 
-      - name: Assert No Results
-        run: |
-          if [ "$(ls -A $RUNNER_TEMP/results)" ]; then
-            echo "Expected results directory to be empty after skipping query execution!"
-            exit 1
-          fi
-      - uses: ./../action/analyze
-        with:
-          output: '${{ runner.temp }}/results'
-          upload-database: false
-      - name: Assert Results
-        run: |
-          cd "$RUNNER_TEMP/results"
-          # We should have 4 hits from these rules
-          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+        matrix.version == 'stable-20221211' ||
 
-          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
-          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
-          echo "Found matching rules '$RULES'"
-          if [ "$RULES" != "$EXPECTED_RULES" ]; then
-            echo "Did not match expected rules '$EXPECTED_RULES'."
-            exit 1
-          fi
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      with:
+        config-file: .github/codeql/codeql-config-packaging3.yml
+        packs: +codeql-testing/codeql-pack1@1.0.0
+        languages: javascript
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - name: Build code
+      shell: bash
+      run: ./build.sh
+    - uses: ./../action/analyze
+      with:
+        skip-queries: true
+        output: ${{ runner.temp }}/results
+        upload-database: false
+
+    - name: Assert No Results
+      shell: bash
+      run: |
+        if [ "$(ls -A $RUNNER_TEMP/results)" ]; then
+          echo "Expected results directory to be empty after skipping query execution!"
+          exit 1
+        fi
+    - uses: ./../action/analyze
+      with:
+        output: ${{ runner.temp }}/results
+        upload-database: false
+    - name: Assert Results
+      shell: bash
+      run: |
+        cd "$RUNNER_TEMP/results"
+        # We should have 4 hits from these rules
+        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+        # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+        echo "Found matching rules '$RULES'"
+        if [ "$RULES" != "$EXPECTED_RULES" ]; then
+          echo "Did not match expected rules '$EXPECTED_RULES'."
+          exit 1
+        fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__start-proxy.yml

@@ -1,105 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Start proxy
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: start-proxy-${{github.ref}}
-jobs:
-  start-proxy:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-          - os: macos-latest
-            version: linked
-          - os: windows-latest
-            version: linked
-    name: Start proxy
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Setup proxy for registries
-        id: proxy
-        uses: ./../action/start-proxy
-        with:
-          language: java
-          registry_secrets: |
-            [
-              {
-                "type": "maven_repository",
-                "url": "https://repo.maven.apache.org/maven2/"
-              },
-              {
-                "type": "maven_repository",
-                "url": "https://repo1.maven.org/maven2"
-              }
-            ]
-
-      - name: Print proxy outputs
-        run: |
-          echo "${{ steps.proxy.outputs.proxy_host }}"
-          echo "${{ steps.proxy.outputs.proxy_port }}"
-          echo "${{ steps.proxy.outputs.proxy_urls }}"
-
-      - name: Fail if proxy outputs are not set
-        if: (!steps.proxy.outputs.proxy_host) || (!steps.proxy.outputs.proxy_port) || (!steps.proxy.outputs.proxy_ca_certificate) || (!steps.proxy.outputs.proxy_urls)
-        run: exit 1
-
-      - name: Fail if proxy_urls does not contain all registries
-        if: |
-          join(fromJSON(steps.proxy.outputs.proxy_urls)[*].type, ',') != 'maven_repository,maven_repository'
-          || !contains(steps.proxy.outputs.proxy_urls, 'https://repo.maven.apache.org/maven2/')
-          || !contains(steps.proxy.outputs.proxy_urls, 'https://repo1.maven.org/maven2')
-        run: exit 1
-
-      - uses: ./../action/init
-        env:
-          CODEQL_PROXY_HOST: ${{ steps.proxy.outputs.proxy_host }}
-          CODEQL_PROXY_PORT: ${{ steps.proxy.outputs.proxy_port }}
-          CODEQL_PROXY_CA_CERTIFICATE: ${{ steps.proxy.outputs.proxy_ca_certificate }}
-        with:
-          languages: java
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          config-file: codeql-action@main:tests/multi-language-repo/.github/codeql/custom-queries.yml
-    env:
-      CODEQL_ACTION_PROXY_API_REQUESTS: 'true'
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__submit-sarif-failure.yml

@@ -1,82 +1,94 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Submit SARIF after failure
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: submit-sarif-failure-${{github.ref}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   submit-sarif-failure:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: default
-          - os: ubuntu-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: latest
+        - os: ubuntu-latest
+          version: default
+        - os: ubuntu-latest
+          version: nightly-latest
     name: Submit SARIF after failure
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - uses: ./init
-        with:
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Fail
-        # We want this job to pass if the Action correctly uploads the SARIF file for
-        # the failed run.
-        # Setting this step to continue on error means that it is marked as completing
-        # successfully, so will not fail the job.
-        continue-on-error: true
-        run: exit 1
-      - uses: ./analyze
-        # In a real workflow, this step wouldn't run. Since we used `continue-on-error`
-        # above, we manually disable it with an `if` condition.
-        if: false
-        with:
-          category: '/test-codeql-version:${{ matrix.version }}'
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: actions/checkout@v4
+    - uses: ./init
+      with:
+        languages: javascript
+    - name: Fail
+    # We want this job to pass if the Action correctly uploads the SARIF file for
+    # the failed run.
+    # Setting this step to continue on error means that it is marked as completing
+    # successfully, so will not fail the job.
+      continue-on-error: true
+      run: exit 1
+    - uses: ./analyze
+    # In a real workflow, this step wouldn't run. Since we used `continue-on-error`
+    # above, we manually disable it with an `if` condition.
+      if: false
+      with:
+        category: /test-codeql-version:${{ matrix.version }}
     env:
+  # Internal-only environment variable used to indicate that the post-init Action
+  # should expect to upload a SARIF file for the failed run.
       CODEQL_ACTION_EXPECT_UPLOAD_FAILED_SARIF: true
+  # Make sure the uploading SARIF files feature is enabled.
       CODEQL_ACTION_UPLOAD_FAILED_SARIF: true
+  # Upload the failed SARIF file as an integration test of the API endpoint.
       CODEQL_ACTION_TEST_MODE: false
+  # Mark telemetry for this workflow so it can be treated separately.
       CODEQL_ACTION_TESTING_ENVIRONMENT: codeql-action-pr-checks
+

.github/workflows/__swift-autobuild.yml

@@ -1,78 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Swift analysis using autobuild
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: swift-autobuild-${{github.ref}}
-jobs:
-  swift-autobuild:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: macos-latest-xlarge
-            version: nightly-latest
-    name: Swift analysis using autobuild
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        id: init
-        with:
-          languages: swift
-          build-mode: autobuild
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Check working directory
-        run: pwd
-      - uses: ./../action/autobuild
-        timeout-minutes: 30
-      - uses: ./../action/analyze
-        id: analysis
-        with:
-          upload-database: false
-      - name: Check database
-        run: |
-          SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
-          if [[ ! -d "$SWIFT_DB" ]]; then
-            echo "Did not create a database for Swift."
-            exit 1
-          fi
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__swift-custom-build.yml

@@ -1,111 +1,101 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Swift analysis using a custom build command
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: swift-custom-build-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   swift-custom-build:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: macos-latest-xlarge
-            version: linked
-          - os: macos-latest-xlarge
-            version: default
-          - os: macos-latest-xlarge
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
     name: Swift analysis using a custom build command
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        id: init
-        with:
-          languages: swift
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Check working directory
-        run: pwd
-      - name: Build code
-        run: ./build.sh
-      - uses: ./../action/analyze
-        id: analysis
-        with:
-          upload-database: false
-      - name: Check database
-        run: |
-          SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
-          if [[ ! -d "$SWIFT_DB" ]]; then
-            echo "Did not create a database for Swift."
-            exit 1
-          fi
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      id: init
+      with:
+        languages: swift
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/.github/actions/setup-swift
+      with:
+        codeql-path: ${{steps.init.outputs.codeql-path}}
+    - name: Check working directory
+      shell: bash
+      run: pwd
+    - name: Build code
+      shell: bash
+      run: ./build.sh
+    - uses: ./../action/analyze
+      id: analysis
+      with:
+        upload-database: false
+    - name: Check database
+      shell: bash
+      run: |
+        SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
+        if [[ ! -d "$SWIFT_DB" ]]; then
+          echo "Did not create a database for Swift."
+          exit 1
+        fi
     env:
       DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__test-autobuild-working-dir.yml

@@ -0,0 +1,89 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Autobuild working directory
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+jobs:
+  test-autobuild-working-dir:
+    strategy:
+      matrix:
+        include:
+        - os: ubuntu-latest
+          version: latest
+    name: Autobuild working directory
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - name: Test setup
+      shell: bash
+      run: |
+        # Make sure that Gradle build succeeds in autobuild-dir ...
+        cp -a ../action/tests/java-repo autobuild-dir
+        # ... and fails if attempted in the current directory
+        echo > build.gradle
+    - uses: ./../action/init
+      with:
+        languages: java
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/autobuild
+      with:
+        working-directory: autobuild-dir
+    - uses: ./../action/analyze
+      with:
+        upload-database: false
+    - name: Check database
+      shell: bash
+      run: |
+        cd "$RUNNER_TEMP/codeql_databases"
+        if [[ ! -d java ]]; then
+          echo "Did not find a Java database"
+          exit 1
+        fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__test-local-codeql.yml

@@ -0,0 +1,83 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Local CodeQL bundle
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+jobs:
+  test-local-codeql:
+    strategy:
+      matrix:
+        include:
+        - os: ubuntu-latest
+          version: nightly-latest
+    name: Local CodeQL bundle
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - name: Fetch a CodeQL bundle
+      shell: bash
+      env:
+        CODEQL_URL: ${{ steps.prepare-test.outputs.tools-url }}
+      run: |
+        wget "$CODEQL_URL"
+    - id: init
+      uses: ./../action/init
+      with:
+        tools: ./codeql-bundle-linux64.tar.gz
+    - uses: ./../action/.github/actions/setup-swift
+      with:
+        codeql-path: ${{ steps.init.outputs.codeql-path }}
+    - name: Build code
+      shell: bash
+      run: ./build.sh
+    - uses: ./../action/analyze
+      with:
+        upload-database: false
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__test-proxy.yml

@@ -0,0 +1,80 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Proxy test
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+jobs:
+  test-proxy:
+    strategy:
+      matrix:
+        include:
+        - os: ubuntu-latest
+          version: latest
+    name: Proxy test
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      with:
+        languages: javascript
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/analyze
+      with:
+        upload-database: false
+    env:
+      https_proxy: http://squid-proxy:3128
+      CODEQL_ACTION_TEST_MODE: true
+    container:
+      image: ubuntu:22.04
+      options: --dns 127.0.0.1
+    services:
+      squid-proxy:
+        image: ubuntu/squid:latest
+        ports:
+        - 3128:3128

.github/workflows/__unset-environment.yml

@@ -1,138 +1,132 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Test unsetting environment variables
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: unset-environment-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   unset-environment:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
+        - os: ubuntu-latest
+          version: stable-20221211
+        - os: ubuntu-latest
+          version: stable-20230418
+        - os: ubuntu-latest
+          version: stable-v2.13.5
+        - os: ubuntu-latest
+          version: stable-v2.14.6
+        - os: ubuntu-latest
+          version: default
+        - os: ubuntu-latest
+          version: latest
+        - os: ubuntu-latest
+          version: nightly-latest
     name: Test unsetting environment variables
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        id: init
-        with:
-          db-location: ${{ runner.temp }}/customDbLocation
-          # Swift is not supported on Ubuntu so we manually exclude it from the list here
-          languages: cpp,csharp,go,java,javascript,python,ruby
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Build code
-        run: env -i PATH="$PATH" HOME="$HOME" ./build.sh
-      - uses: ./../action/analyze
-        id: analysis
-        with:
-          upload-database: false
-      - run: |
-          CPP_DB="${{ fromJson(steps.analysis.outputs.db-locations).cpp }}"
-          if [[ ! -d "$CPP_DB" ]] || [[ ! "$CPP_DB" == "${RUNNER_TEMP}/customDbLocation/cpp" ]]; then
-            echo "::error::Did not create a database for CPP, or created it in the wrong location." \
-              "Expected location was '${RUNNER_TEMP}/customDbLocation/cpp' but actual was '${CPP_DB}'"
-            exit 1
-          fi
-          CSHARP_DB="${{ fromJson(steps.analysis.outputs.db-locations).csharp }}"
-          if [[ ! -d "$CSHARP_DB" ]] || [[ ! "$CSHARP_DB" == "${RUNNER_TEMP}/customDbLocation/csharp" ]]; then
-            echo "::error::Did not create a database for C Sharp, or created it in the wrong location." \
-              "Expected location was '${RUNNER_TEMP}/customDbLocation/csharp' but actual was '${CSHARP_DB}'"
-            exit 1
-          fi
-          GO_DB="${{ fromJson(steps.analysis.outputs.db-locations).go }}"
-          if [[ ! -d "$GO_DB" ]] || [[ ! "$GO_DB" == "${RUNNER_TEMP}/customDbLocation/go" ]]; then
-            echo "::error::Did not create a database for Go, or created it in the wrong location." \
-              "Expected location was '${RUNNER_TEMP}/customDbLocation/go' but actual was '${GO_DB}'"
-            exit 1
-          fi
-          JAVA_DB="${{ fromJson(steps.analysis.outputs.db-locations).java }}"
-          if [[ ! -d "$JAVA_DB" ]] || [[ ! "$JAVA_DB" == "${RUNNER_TEMP}/customDbLocation/java" ]]; then
-            echo "::error::Did not create a database for Java, or created it in the wrong location." \
-              "Expected location was '${RUNNER_TEMP}/customDbLocation/java' but actual was '${JAVA_DB}'"
-            exit 1
-          fi
-          JAVASCRIPT_DB="${{ fromJson(steps.analysis.outputs.db-locations).javascript }}"
-          if [[ ! -d "$JAVASCRIPT_DB" ]] || [[ ! "$JAVASCRIPT_DB" == "${RUNNER_TEMP}/customDbLocation/javascript" ]]; then
-            echo "::error::Did not create a database for Javascript, or created it in the wrong location." \
-              "Expected location was '${RUNNER_TEMP}/customDbLocation/javascript' but actual was '${JAVASCRIPT_DB}'"
-            exit 1
-          fi
-          PYTHON_DB="${{ fromJson(steps.analysis.outputs.db-locations).python }}"
-          if [[ ! -d "$PYTHON_DB" ]] || [[ ! "$PYTHON_DB" == "${RUNNER_TEMP}/customDbLocation/python" ]]; then
-            echo "::error::Did not create a database for Python, or created it in the wrong location." \
-              "Expected location was '${RUNNER_TEMP}/customDbLocation/python' but actual was '${PYTHON_DB}'"
-            exit 1
-          fi
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      id: init
+      with:
+        db-location: ${{ runner.temp }}/customDbLocation
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/.github/actions/setup-swift
+      with:
+        codeql-path: ${{ steps.init.outputs.codeql-path }}
+    - name: Build code
+      shell: bash
+    # Disable Kotlin analysis while it's incompatible with Kotlin 1.8, until we find a
+    # workaround for our PR checks.
+      run: env -i CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN=true PATH="$PATH" HOME="$HOME"
+        ./build.sh
+    - uses: ./../action/analyze
+      id: analysis
+      with:
+        upload-database: false
+    - shell: bash
+      run: |
+        CPP_DB="${{ fromJson(steps.analysis.outputs.db-locations).cpp }}"
+        if [[ ! -d "$CPP_DB" ]] || [[ ! "$CPP_DB" == "${RUNNER_TEMP}/customDbLocation/cpp" ]]; then
+          echo "::error::Did not create a database for CPP, or created it in the wrong location." \
+            "Expected location was '${RUNNER_TEMP}/customDbLocation/cpp' but actual was '${CPP_DB}'"
+          exit 1
+        fi
+        CSHARP_DB="${{ fromJson(steps.analysis.outputs.db-locations).csharp }}"
+        if [[ ! -d "$CSHARP_DB" ]] || [[ ! "$CSHARP_DB" == "${RUNNER_TEMP}/customDbLocation/csharp" ]]; then
+          echo "::error::Did not create a database for C Sharp, or created it in the wrong location." \
+            "Expected location was '${RUNNER_TEMP}/customDbLocation/csharp' but actual was '${CSHARP_DB}'"
+          exit 1
+        fi
+        GO_DB="${{ fromJson(steps.analysis.outputs.db-locations).go }}"
+        if [[ ! -d "$GO_DB" ]] || [[ ! "$GO_DB" == "${RUNNER_TEMP}/customDbLocation/go" ]]; then
+          echo "::error::Did not create a database for Go, or created it in the wrong location." \
+            "Expected location was '${RUNNER_TEMP}/customDbLocation/go' but actual was '${GO_DB}'"
+          exit 1
+        fi
+        JAVA_DB="${{ fromJson(steps.analysis.outputs.db-locations).java }}"
+        if [[ ! -d "$JAVA_DB" ]] || [[ ! "$JAVA_DB" == "${RUNNER_TEMP}/customDbLocation/java" ]]; then
+          echo "::error::Did not create a database for Java, or created it in the wrong location." \
+            "Expected location was '${RUNNER_TEMP}/customDbLocation/java' but actual was '${JAVA_DB}'"
+          exit 1
+        fi
+        JAVASCRIPT_DB="${{ fromJson(steps.analysis.outputs.db-locations).javascript }}"
+        if [[ ! -d "$JAVASCRIPT_DB" ]] || [[ ! "$JAVASCRIPT_DB" == "${RUNNER_TEMP}/customDbLocation/javascript" ]]; then
+          echo "::error::Did not create a database for Javascript, or created it in the wrong location." \
+            "Expected location was '${RUNNER_TEMP}/customDbLocation/javascript' but actual was '${JAVASCRIPT_DB}'"
+          exit 1
+        fi
+        PYTHON_DB="${{ fromJson(steps.analysis.outputs.db-locations).python }}"
+        if [[ ! -d "$PYTHON_DB" ]] || [[ ! "$PYTHON_DB" == "${RUNNER_TEMP}/customDbLocation/python" ]]; then
+          echo "::error::Did not create a database for Python, or created it in the wrong location." \
+            "Expected location was '${RUNNER_TEMP}/customDbLocation/python' but actual was '${PYTHON_DB}'"
+          exit 1
+        fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__upload-ref-sha-input.yml

@@ -1,103 +1,87 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: "PR Check - Upload-sarif: 'ref' and 'sha' from inputs"
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: upload-ref-sha-input-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   upload-ref-sha-input:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: default
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: windows-latest
+          version: default
     name: "Upload-sarif: 'ref' and 'sha' from inputs"
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          languages: cpp,csharp,java,javascript,python
-          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{ github.sha }}
-      - name: Build code
-        run: ./build.sh
-      # Generate some SARIF we can upload with the upload-sarif step
-      - uses: ./../action/analyze
-        with:
-          ref: 'refs/heads/main'
-          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
-          upload: never
-      - uses: ./../action/upload-sarif
-        with:
-          ref: 'refs/heads/main'
-          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
+
+        matrix.version == 'stable-20221211' ||
+
+        matrix.version == 'stable-20230418' ||
+
+        matrix.version == 'stable-v2.13.5' ||
+
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - uses: ./../action/init
+      with:
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+        languages: cpp,csharp,java,javascript,python
+        config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
+          github.sha }}
+    - name: Build code
+      shell: bash
+      run: ./build.sh
+    - uses: ./../action/analyze
+      with:
+        upload-database: false
+        ref: refs/heads/main
+        sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+        upload: never
+    - uses: ./../action/upload-sarif
+      with:
+        ref: refs/heads/main
+        sha: 5e235361806c361d4d3f8859e3c897658025a9a2
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__upload-sarif.yml

@@ -1,168 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Test different uses of `upload-sarif`
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: upload-sarif-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
-jobs:
-  upload-sarif:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: default
-            analysis-kinds: code-scanning
-          - os: ubuntu-latest
-            version: default
-            analysis-kinds: code-quality
-          - os: ubuntu-latest
-            version: default
-            analysis-kinds: code-scanning,code-quality
-    name: Test different uses of `upload-sarif`
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          languages: csharp,java,javascript,python
-          analysis-kinds: ${{ matrix.analysis-kinds }}
-      - name: Build code
-        run: ./build.sh
-      # Generate some SARIF we can upload with the upload-sarif step
-      - uses: ./../action/analyze
-        with:
-          ref: 'refs/heads/main'
-          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
-          upload: never
-          output: ${{ runner.temp }}/results
-
-      - name: |
-          Upload all SARIF files for `analysis-kinds: ${{ matrix.analysis-kinds }}`
-        uses: ./../action/upload-sarif
-        id: upload-sarif
-        with:
-          ref: 'refs/heads/main'
-          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
-          sarif_file: ${{ runner.temp }}/results
-          category: |
-            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:all-files/
-      - name: 'Fail for missing output from `upload-sarif` step for `code-scanning`'
-        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-scanning)
-        run: exit 1
-      - name: 'Fail for missing output from `upload-sarif` step for `code-quality`'
-        if: contains(matrix.analysis-kinds, 'code-quality') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-quality)
-        run: exit 1
-
-      - name: Upload single SARIF file for Code Scanning
-        uses: ./../action/upload-sarif
-        id: upload-single-sarif-code-scanning
-        if: contains(matrix.analysis-kinds, 'code-scanning')
-        with:
-          ref: 'refs/heads/main'
-          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
-          sarif_file: ${{ runner.temp }}/results/javascript.sarif
-          category: |
-            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-scanning/
-      - name: 'Fail for missing output from `upload-single-sarif-code-scanning` step'
-        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-single-sarif-code-scanning.outputs.sarif-ids).code-scanning)
-        run: exit 1
-      - name: Upload single SARIF file for Code Quality
-        uses: ./../action/upload-sarif
-        id: upload-single-sarif-code-quality
-        if: contains(matrix.analysis-kinds, 'code-quality')
-        with:
-          ref: 'refs/heads/main'
-          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
-          sarif_file: ${{ runner.temp }}/results/javascript.quality.sarif
-          category: |
-            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-quality/
-      - name: 'Fail for missing output from `upload-single-sarif-code-quality` step'
-        if: contains(matrix.analysis-kinds, 'code-quality') && !(fromJSON(steps.upload-single-sarif-code-quality.outputs.sarif-ids).code-quality)
-        run: exit 1
-
-      - name: Change SARIF file extension
-        if: contains(matrix.analysis-kinds, 'code-scanning')
-        run: mv ${{ runner.temp }}/results/javascript.sarif ${{ runner.temp }}/results/javascript.sarif.json
-      - name: Upload single non-`.sarif` file
-        uses: ./../action/upload-sarif
-        id: upload-single-non-sarif
-        if: contains(matrix.analysis-kinds, 'code-scanning')
-        with:
-          ref: 'refs/heads/main'
-          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
-          sarif_file: ${{ runner.temp }}/results/javascript.sarif.json
-          category: |
-            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:non-sarif/
-      - name: 'Fail for missing output from `upload-single-non-sarif` step'
-        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-single-non-sarif.outputs.sarif-ids).code-scanning)
-        run: exit 1
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__with-checkout-path.yml

@@ -1,146 +1,174 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Use a custom `checkout_path`
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-      - main
-      - releases/v*
-  pull_request: {}
-  merge_group:
+    - main
+    - releases/v*
+  pull_request:
     types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: with-checkout-path-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 jobs:
   with-checkout-path:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: linked
+        - os: ubuntu-latest
+          version: stable-20221211
+        - os: macos-latest
+          version: stable-20221211
+        - os: windows-latest
+          version: stable-20221211
+        - os: ubuntu-latest
+          version: stable-20230418
+        - os: macos-latest
+          version: stable-20230418
+        - os: windows-latest
+          version: stable-20230418
+        - os: ubuntu-latest
+          version: stable-v2.13.5
+        - os: macos-latest
+          version: stable-v2.13.5
+        - os: windows-latest
+          version: stable-v2.13.5
+        - os: ubuntu-latest
+          version: stable-v2.14.6
+        - os: macos-latest
+          version: stable-v2.14.6
+        - os: windows-latest
+          version: stable-v2.14.6
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: windows-latest
+          version: default
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: windows-latest
+          version: latest
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-latest
+          version: nightly-latest
     name: Use a custom `checkout_path`
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      # This ensures we don't accidentally use the original checkout for any part of the test.
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Delete original checkout
-        run: |
-          # delete the original checkout so we don't accidentally use it.
-          # Actions does not support deleting the current working directory, so we
-          # delete the contents of the directory instead.
-          rm -rf ./* .github .git
-      # Check out the actions repo again, but at a different location.
-      # choose an arbitrary SHA so that we can later test that the commit_oid is not from main
-      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-        with:
-          ref: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
-          path: x/y/z/some-path
+    - name: Setup Python on MacOS
+      uses: actions/setup-python@v5
+      if: >-
+        matrix.os == 'macos-latest' && (
 
-      - uses: ./../action/init
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          # it's enough to test one compiled language and one interpreted language
-          languages: csharp,javascript
-          source-root: x/y/z/some-path/tests/multi-language-repo
+        matrix.version == 'stable-20221211' ||
 
-      - name: Build code
-        working-directory: x/y/z/some-path/tests/multi-language-repo
-        run: |
-          ./build.sh
+        matrix.version == 'stable-20230418' ||
 
-      - uses: ./../action/analyze
-        with:
-          checkout_path: x/y/z/some-path/tests/multi-language-repo
-          ref: v1.1.0
-          sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
+        matrix.version == 'stable-v2.13.5' ||
 
-      - name: Verify SARIF after upload
-        run: |
-          PAYLOAD_FILE="$RUNNER_TEMP/payload-code-scanning.json"
-          EXPECTED_COMMIT_OID="474bbf07f9247ffe1856c6a0f94aeeb10e7afee6"
-          EXPECTED_REF="v1.1.0"
-          EXPECTED_CHECKOUT_URI_SUFFIX="/x/y/z/some-path/tests/multi-language-repo"
+        matrix.version == 'stable-v2.14.6')
+      with:
+        python-version: '3.11'
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: 'false'
+    - name: Set environment variable for Swift enablement
+      if: runner.os != 'Windows' && matrix.version == '20221211'
+      shell: bash
+      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
+    - name: Delete original checkout
+      shell: bash
+      run: |
+        # delete the original checkout so we don't accidentally use it.
+        # Actions does not support deleting the current working directory, so we
+        # delete the contents of the directory instead.
+        rm -rf ./* .github .git
+  # Check out the actions repo again, but at a different location.
+  # choose an arbitrary SHA so that we can later test that the commit_oid is not from main
+    - uses: actions/checkout@v4
+      with:
+        ref: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
+        path: x/y/z/some-path
 
-          ACTUAL_COMMIT_OID="$(cat "$PAYLOAD_FILE" | jq -r .commit_oid)"
-          ACTUAL_REF="$(cat "$PAYLOAD_FILE" | jq -r .ref)"
-          ACTUAL_CHECKOUT_URI="$(cat "$PAYLOAD_FILE" | jq -r .checkout_uri)"
+    - uses: ./../action/init
+      with:
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+      # it's enough to test one compiled language and one interpreted language
+        languages: csharp,javascript
+        source-root: x/y/z/some-path/tests/multi-language-repo
+        debug: true
 
-          if [[ "$EXPECTED_COMMIT_OID" != "$ACTUAL_COMMIT_OID" ]]; then
-            echo "::error Invalid commit oid. Expected: $EXPECTED_COMMIT_OID Actual: $ACTUAL_COMMIT_OID"
-            echo "$PAYLOAD_FILE"
-            exit 1
-          fi
+    - name: Build code
+      shell: bash
+      working-directory: x/y/z/some-path/tests/multi-language-repo
+      run: |
+        ./build.sh
 
-          if [[ "$EXPECTED_REF" != "$ACTUAL_REF" ]]; then
-            echo "::error Invalid ref. Expected: '$EXPECTED_REF' Actual: '$ACTUAL_REF'"
-            echo "$PAYLOAD_FILE"
-            exit 1
-          fi
+    - uses: ./../action/analyze
+      with:
+        checkout_path: x/y/z/some-path/tests/multi-language-repo
+        ref: v1.1.0
+        sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
+        upload: never
+        upload-database: false
 
-          if [[ "$ACTUAL_CHECKOUT_URI" != *$EXPECTED_CHECKOUT_URI_SUFFIX ]]; then
-            echo "::error Invalid checkout URI suffix. Expected suffix: $EXPECTED_CHECKOUT_URI_SUFFIX Actual uri: $ACTUAL_CHECKOUT_URI"
-            echo "$PAYLOAD_FILE"
-            exit 1
-          fi
+    - uses: ./../action/upload-sarif
+      with:
+        ref: v1.1.0
+        sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
+        checkout_path: x/y/z/some-path/tests/multi-language-repo
+
+    - name: Verify SARIF after upload
+      shell: bash
+      run: |
+        EXPECTED_COMMIT_OID="474bbf07f9247ffe1856c6a0f94aeeb10e7afee6"
+        EXPECTED_REF="v1.1.0"
+        EXPECTED_CHECKOUT_URI_SUFFIX="/x/y/z/some-path/tests/multi-language-repo"
+
+        ACTUAL_COMMIT_OID="$(cat "$RUNNER_TEMP/payload.json" | jq -r .commit_oid)"
+        ACTUAL_REF="$(cat "$RUNNER_TEMP/payload.json" | jq -r .ref)"
+        ACTUAL_CHECKOUT_URI="$(cat "$RUNNER_TEMP/payload.json" | jq -r .checkout_uri)"
+
+        if [[ "$EXPECTED_COMMIT_OID" != "$ACTUAL_COMMIT_OID" ]]; then
+          echo "::error Invalid commit oid. Expected: $EXPECTED_COMMIT_OID Actual: $ACTUAL_COMMIT_OID"
+          echo "$RUNNER_TEMP/payload.json"
+          exit 1
+        fi
+
+        if [[ "$EXPECTED_REF" != "$ACTUAL_REF" ]]; then
+          echo "::error Invalid ref. Expected: '$EXPECTED_REF' Actual: '$ACTUAL_REF'"
+          echo "$RUNNER_TEMP/payload.json"
+          exit 1
+        fi
+
+        if [[ "$ACTUAL_CHECKOUT_URI" != *$EXPECTED_CHECKOUT_URI_SUFFIX ]]; then
+          echo "::error Invalid checkout URI suffix. Expected suffix: $EXPECTED_CHECKOUT_URI_SUFFIX Actual uri: $ACTUAL_CHECKOUT_URI"
+          echo "$RUNNER_TEMP/payload.json"
+          exit 1
+        fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/check-expected-release-files.yml

@@ -5,25 +5,17 @@ on:
     paths:
       - .github/workflows/check-expected-release-files.yml
       - src/defaults.json
-
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: ${{ github.workflow }}-${{ github.ref }}
-
-defaults:
-  run:
-    shell: bash
+    # Run checks on reopened draft PRs to support triggering PR checks on draft PRs that were opened
+    # by other workflows.
+    types: [opened, synchronize, reopened, ready_for_review]
 
 jobs:
   check-expected-release-files:
-    runs-on: ubuntu-slim
-
-    permissions:
-      contents: read
+    runs-on: ubuntu-latest
 
     steps:
       - name: Checkout CodeQL Action
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+        uses: actions/checkout@v4
       - name: Check Expected Release Files
         run: |
           bundle_version="$(cat "./src/defaults.json" | jq -r ".bundleVersion")"

.github/workflows/codeql.yml

@@ -1,139 +1,68 @@
-name: "CodeQL action"
+# For most projects, this workflow file will not need changing; you simply need
+# to commit it to your repository.
+#
+# You may wish to alter this file to override the set of languages analyzed,
+# or to provide custom queries or build logic.
+#
+# ******** NOTE ********
+# We have attempted to detect the languages in your repository. Please check
+# the `language` matrix defined below to confirm you have the correct set of
+# supported CodeQL languages.
+#
+name: "CodeQL"
 
 on:
-  push:
-    branches: [main, releases/v*]
-  pull_request:
-  merge_group:
-    types: [checks_requested]
-  schedule:
-    # Weekly on Sunday.
-    - cron: '30 1 * * 0'
   workflow_dispatch:
 
-defaults:
-  run:
-    shell: bash
-
-env:
-  CODEQL_ACTION_TESTING_ENVIRONMENT: codeql-action-pr-checks
-
 jobs:
-  # Identify the CodeQL tool versions to use in the analysis job.
-  check-codeql-versions:
-    if: github.triggering_actor != 'dependabot[bot]'
+  analyze:
+    name: Analyze
     runs-on: ubuntu-latest
-    outputs:
-      versions: ${{ steps.compare.outputs.versions }}
-
-    permissions:
-      contents: read
-      # We currently need `security-events: read` to access feature flags.
-      security-events: read
-
-    steps:
-    - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-    - name: Set up default CodeQL bundle
-      id: setup-default
-      uses: ./setup-codeql
-    - name: Set up linked CodeQL bundle
-      id: setup-linked
-      uses: ./setup-codeql
-      with:
-        tools: linked
-    - name: Compare default and linked CodeQL bundle versions
-      id: compare
-      env:
-        CODEQL_DEFAULT: ${{ steps.setup-default.outputs.codeql-path }}
-        CODEQL_LINKED: ${{ steps.setup-linked.outputs.codeql-path }}
-      run: |
-        CODEQL_VERSION_DEFAULT="$("$CODEQL_DEFAULT" version --format terse)"
-        CODEQL_VERSION_LINKED="$("$CODEQL_LINKED" version --format terse)"
-        echo "Default CodeQL bundle version is $CODEQL_VERSION_DEFAULT"
-        echo "Linked CodeQL bundle version is $CODEQL_VERSION_LINKED"
-
-        # If we're running on a pull request, run with both bundles, even if `tools: linked` would
-        # be the same as `tools: null`. This allows us to make the job for each of the bundles a
-        # required status check.
-        #
-        # If we're running on push or schedule, then we can skip running with `tools: linked` when it would be
-        # the same as running with `tools: null`.
-        if [[ "$GITHUB_EVENT_NAME" != "pull_request" && "$GITHUB_EVENT_NAME" != "merge_group" && "$CODEQL_VERSION_DEFAULT" == "$CODEQL_VERSION_LINKED" ]]; then
-          VERSIONS_JSON='[null]'
-        else
-          VERSIONS_JSON='[null, "linked"]'
-        fi
-
-        # Output a JSON-encoded list with the distinct versions to test against.
-        echo "Suggested matrix config for analysis job: $VERSIONS_JSON"
-        echo "versions=${VERSIONS_JSON}" >> $GITHUB_OUTPUT
-
-  analyze-javascript:
-    if: github.triggering_actor != 'dependabot[bot]'
-    needs: [check-codeql-versions]
-    strategy:
-      fail-fast: false
-      matrix:
-        os: [ubuntu-22.04,ubuntu-24.04,windows-2022,windows-2025,macos-14-xlarge,macos-15-xlarge]
-        tools: ${{ fromJson(needs.check-codeql-versions.outputs.versions) }}
-    runs-on: ${{ matrix.os }}
-
     permissions:
+      actions: read
       contents: read
       security-events: write
 
-    steps:
-    - name: Checkout
-      uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-    - name: Initialize CodeQL
-      uses: ./init
-      id: init
-      with:
-        languages: javascript
-        config-file: ./.github/codeql/codeql-config-javascript.yml
-        tools: ${{ matrix.tools }}
-    # confirm steps.init.outputs.codeql-path points to the codeql binary
-    - name: Print CodeQL Version
-      run: >
-        "$CODEQL" version --format=json
-      env:
-        CODEQL: ${{steps.init.outputs.codeql-path}}
-    - name: Perform CodeQL Analysis
-      uses: ./analyze
-      with:
-        category: "/language:javascript"
-        upload: ${{ (matrix.os == 'ubuntu-24.04' && !matrix.tools && github.event_name != 'merge_group' && 'always' ) || 'never' }}
-
-  analyze-other:
-    if: github.triggering_actor != 'dependabot[bot]'
-    runs-on: ubuntu-latest
-
     strategy:
       fail-fast: false
       matrix:
-        include:
-          - language: actions
-
-    permissions:
-      contents: read
-      security-events: write
+        language: [ 'javascript' ]
+        # CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python', 'ruby' ]
+        # Learn more about CodeQL language support at https://aka.ms/codeql-docs/language-support
 
     steps:
-    - name: Checkout
-      uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+    - name: Checkout repository
+      uses: actions/checkout@v3
+
+    # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL
-      uses: ./init
+      uses: github/codeql-action/init@nickfyson/testing
       with:
         languages: ${{ matrix.language }}
-        build-mode: none
-        config: >
-          paths-ignore:
-            - lib
-            - tests
-          queries:
-            - uses: security-and-quality
+        # If you wish to specify custom queries, you can do so here or in a config file.
+        # By default, queries listed here will override any specified in a config file.
+        # Prefix the list here with "+" to use these queries and those in the config file.
+        
+        # Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
+        # queries: security-extended,security-and-quality
+
+        
+    # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
+    # If this step fails, then you should remove it and run the build manually (see below)
+    - name: Autobuild
+      uses: github/codeql-action/autobuild@nickfyson/testing
+
+    # ℹ️ Command-line programs to run using the OS shell.
+    # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
+
+    #   If the Autobuild fails above, remove it and uncomment the following three lines. 
+    #   modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
+
+    # - run: |
+    #   echo "Run, Build Application using script"
+    #   ./location_of_script_within_repo/buildscript.sh
+
     - name: Perform CodeQL Analysis
-      uses: ./analyze
+      uses: github/codeql-action/analyze@nickfyson/testing
       with:
-        category: "/language:${{ matrix.language }}"
-        upload: ${{ (github.event_name != 'merge_group' && 'always') || 'never' }}
+        category: "/language:${{matrix.language}}"

.github/workflows/codescanning-config-cli.yml

@@ -3,9 +3,6 @@
 name: Code-Scanning config CLI tests
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  # Diff informed queries add an additional query filter which is not yet
-  # taken into account by these tests.
-  CODEQL_ACTION_DIFF_INFORMED_QUERIES: false
 
 on:
   push:
@@ -13,40 +10,32 @@ on:
     - main
     - releases/v*
   pull_request:
-  merge_group:
-    types: [checks_requested]
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: ${{ github.workflow }}-${{ github.ref }}
-
-defaults:
-  run:
-    shell: bash
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
 
 jobs:
   code-scanning-config-tests:
-    if: github.triggering_actor != 'dependabot[bot]'
     continue-on-error: true
 
-    permissions:
-      contents: read
-      packages: read
-      security-events: read
-
     strategy:
-      fail-fast: false
       matrix:
         include:
         - os: ubuntu-latest
-          version: linked
+          version: latest
+        - os: macos-latest
+          version: latest
         - os: ubuntu-latest
           version: default
+        - os: macos-latest
+          version: default
         - os: ubuntu-latest
           version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
 
     # Code-Scanning config not created because environment variable is not set
     name: Code Scanning Configuration tests
@@ -54,17 +43,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-
-    - name: Set up Node.js
-      uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
-      with:
-        node-version: 24
-        cache: 'npm'
-
-    - name: Install dependencies
-      run: npm ci
-
+      uses: actions/checkout@v4
     - name: Prepare test
       id: prepare-test
       uses: ./.github/actions/prepare-test
@@ -75,8 +54,7 @@ jobs:
       uses: ./../action/.github/actions/check-codescanning-config
       with:
         expected-config-file-contents: "{}"
-        # Request multiple languages so later checks can reuse the combined bundle.
-        languages: javascript,python
+        languages: javascript
         tools: ${{ steps.prepare-test.outputs.tools-url }}
 
     - name: Packs from input
@@ -177,13 +155,13 @@ jobs:
       with:
         expected-config-file-contents: |
           {
+            "queries": [
+              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/foo2/show_ifs.ql" },
+              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" }
+            ],
             "packs": {
               "javascript": ["codeql-testing/codeql-pack1@1.0.0", "codeql-testing/codeql-pack2", "codeql/javascript-queries" ]
-            },
-            "queries": [
-              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" },
-              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/foo2/show_ifs.ql" }
-            ]
+            }
           }
         languages: javascript
         queries: + ./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql

.github/workflows/debug-artifacts-failure-safe.yml

@@ -1,117 +0,0 @@
-# Checks logs, SARIF, and database bundle debug artifacts exist
-# when the analyze step fails.
-name: PR Check - Debug artifacts after failure
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-on:
-  push:
-    branches:
-    - main
-    - releases/v*
-  pull_request:
-  merge_group:
-    types: [checks_requested]
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: ${{ github.workflow }}-${{ github.ref }}
-
-defaults:
-  run:
-    shell: bash
-
-jobs:
-  upload-artifacts:
-    if: github.triggering_actor != 'dependabot[bot]'
-    strategy:
-      fail-fast: false
-      matrix:
-        version:
-        - stable-v2.20.3
-        - default
-        - linked
-        - nightly-latest
-    name: Upload debug artifacts after failure in analyze
-    continue-on-error: true
-    env:
-      CODEQL_ACTION_TEST_MODE: true
-    permissions:
-      contents: read
-      # We currently need `security-events: read` to access feature flags.
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ubuntu-latest
-    steps:
-      - name: Dump GitHub event
-        run: cat "${GITHUB_EVENT_PATH}"
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-      - uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ^1.13.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: '9.x'
-      - name: Assert best-effort artifact scan completed
-        uses: ./../action/.github/actions/verify-debug-artifact-scan-completed
-      - uses: ./../action/init
-        with:
-          languages: cpp,csharp,go,java,javascript,python
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          debug: true
-          debug-artifact-name: my-debug-artifacts
-          debug-database-name: my-db
-      - name: Build code
-        run: ./build.sh
-      - uses: ./../action/analyze
-        id: analysis
-        env:
-          # Forces a failure in this step.
-          CODEQL_ACTION_EXTRA_OPTIONS: '{ "database": { "finalize": ["--invalid-option"] } }'
-        with:
-          expect-error: true
-  download-and-check-artifacts:
-    name: Download and check debug artifacts after failure in analyze
-    if: github.triggering_actor != 'dependabot[bot]'
-    needs: upload-artifacts
-    timeout-minutes: 45
-    permissions:
-      contents: read
-    runs-on: ubuntu-latest
-    steps:
-      - name: Download all artifacts
-        uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c # v8.0.1
-      - name: Check expected artifacts exist
-        run: |
-          LANGUAGES="cpp csharp go java javascript python"
-          for version in $VERSIONS; do
-            echo "Artifacts from version $version:"
-            pushd "./my-debug-artifacts-${version//./}"
-            for language in $LANGUAGES; do
-              echo "- Checking $language"
-              if [[ ! -f "my-db-$language-partial.zip" ]] ; then
-                echo "Missing a partial database bundle for $language"
-                exit 1
-              fi
-              if [[ ! -d "log" ]] ; then
-                echo "Missing database initialization logs"
-                exit 1
-              fi
-              if [[ ! "$language" == "go" ]] && [[ ! -d "$language/log" ]] ; then
-                echo "Missing logs for $language"
-                exit 1
-              fi
-            done
-            popd
-          done
-        env:
-          GO111MODULE: auto

.github/workflows/debug-artifacts-failure.yml

@@ -0,0 +1,93 @@
+# Checks logs, SARIF, and database bundle debug artifacts exist
+# when the analyze step fails.
+name: PR Check - Debug artifacts after failure
+env:
+  # Disable Kotlin analysis while it's incompatible with Kotlin 1.8, until we find a
+  # workaround for our PR checks.
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: true
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+jobs:
+  upload-artifacts:
+    strategy:
+      matrix:
+        os: [ubuntu-latest, macos-latest]
+    name: Upload debug artifacts after failure in analyze
+    continue-on-error: true
+    env:
+      CODEQL_ACTION_TEST_MODE: true
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Dump GitHub event
+        run: cat "${GITHUB_EVENT_PATH}"
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: latest
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ^1.13.1
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          debug: true
+          debug-artifact-name: my-debug-artifacts
+          debug-database-name: my-db
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          expect-error: true
+          ram: 1
+  download-and-check-artifacts:
+    name: Download and check debug artifacts after failure in analyze
+    needs: upload-artifacts
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+      - name: Download all artifacts
+        uses: actions/download-artifact@v3
+      - name: Check expected artifacts exist
+        shell: bash
+        run: |
+          OPERATING_SYSTEMS="ubuntu-latest macos-latest"
+          LANGUAGES="cpp csharp go java javascript python"
+          for os in $OPERATING_SYSTEMS; do
+            pushd "./my-debug-artifacts-$os"
+            echo "Artifacts from run on $os:"
+            for language in $LANGUAGES; do
+              echo "- Checking $language"
+              if [[ ! -f "my-db-$language-partial.zip" ]] ; then
+                echo "Missing a partial database bundle for $language"
+                exit 1
+              fi
+              if [[ ! -d "log" ]] ; then
+                echo "Missing database initialization logs"
+                exit 1
+              fi
+              if [[ ! "$language" == "go" ]] && [[ ! -d "$language/log" ]] ; then
+                echo "Missing logs for $language"
+                exit 1
+              fi
+            done
+            popd
+          done
+        env:
+          GO111MODULE: auto

.github/workflows/debug-artifacts-safe.yml

@@ -1,111 +0,0 @@
-# Checks logs, SARIF, and database bundle debug artifacts exist.
-name: PR Check - Debug artifact upload
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-on:
-  push:
-    branches:
-    - main
-    - releases/v*
-  pull_request:
-  merge_group:
-    types: [checks_requested]
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: ${{ github.workflow }}-${{ github.ref }}
-
-defaults:
-  run:
-    shell: bash
-
-jobs:
-  upload-artifacts:
-    if: github.triggering_actor != 'dependabot[bot]'
-    strategy:
-      fail-fast: false
-      matrix:
-        version:
-        - stable-v2.20.3
-        - default
-        - linked
-        - nightly-latest
-    name: Upload debug artifacts
-    env:
-      CODEQL_ACTION_TEST_MODE: true
-    timeout-minutes: 45
-    permissions:
-      contents: read
-      # We currently need `security-events: read` to access feature flags.
-      security-events: read
-    runs-on: ubuntu-latest
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-      - uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
-        with:
-          go-version: ^1.13.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
-        with:
-          dotnet-version: '9.x'
-      - name: Assert best-effort artifact scan completed
-        uses: ./../action/.github/actions/verify-debug-artifact-scan-completed
-      - uses: ./../action/init
-        id: init
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          debug: true
-          debug-artifact-name: my-debug-artifacts
-          debug-database-name: my-db
-          # We manually exclude Swift from the languages list here, as it is not supported on Ubuntu
-          languages: cpp,csharp,go,java,javascript,python,ruby
-      - name: Build code
-        run: ./build.sh
-      - uses: ./../action/analyze
-        id: analysis
-  download-and-check-artifacts:
-    name: Download and check debug artifacts
-    if: github.triggering_actor != 'dependabot[bot]'
-    needs: upload-artifacts
-    timeout-minutes: 45
-    permissions:
-      contents: read
-    runs-on: ubuntu-latest
-    steps:
-      - name: Download all artifacts
-        uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c # v8.0.1
-      - name: Check expected artifacts exist
-        run: |
-          VERSIONS="stable-v2.20.3 default linked nightly-latest"
-          LANGUAGES="cpp csharp go java javascript python"
-          for version in $VERSIONS; do
-            pushd "./my-debug-artifacts-${version//./}"
-            echo "Artifacts from version $version:"
-            for language in $LANGUAGES; do
-              echo "- Checking $language"
-              if [[ ! -f "$language.sarif" ]] ; then
-                echo "Missing a SARIF file for $language"
-                exit 1
-              fi
-              if [[ ! -f "my-db-$language.zip" ]] ; then
-                echo "Missing a database bundle for $language"
-                exit 1
-              fi
-              if [[ ! -d "$language/log" ]] ; then
-                echo "Missing logs for $language"
-                exit 1
-              fi
-            done
-            popd
-          done
-        env:
-          GO111MODULE: auto

.github/workflows/debug-artifacts.yml

@@ -0,0 +1,112 @@
+# Checks logs, SARIF, and database bundle debug artifacts exist.
+name: PR Check - Debug artifact upload
+env:
+  # Disable Kotlin analysis while it's incompatible with Kotlin 1.8, until we find a
+  # workaround for our PR checks.
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: true
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+jobs:
+  upload-artifacts:
+    strategy:
+      matrix:
+        os:
+        - ubuntu-latest
+        - macos-latest
+        version:
+        - stable-20221211
+        - stable-20230418
+        - stable-v2.13.5
+        - stable-v2.14.6
+        - default
+        - latest
+        - nightly-latest
+    name: Upload debug artifacts
+    env:
+      CODEQL_ACTION_TEST_MODE: true
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ^1.13.1
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: |
+          matrix.os == 'macos-latest' && (
+          matrix.version == 'stable-20221211' ||
+          matrix.version == 'stable-20230418' ||
+          matrix.version == 'stable-v2.13.5' ||
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
+      - uses: ./../action/init
+        id: init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          debug: true
+          debug-artifact-name: my-debug-artifacts
+          debug-database-name: my-db
+      - uses: ./../action/.github/actions/setup-swift
+        with:
+          codeql-path: ${{ steps.init.outputs.codeql-path }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+  download-and-check-artifacts:
+    name: Download and check debug artifacts
+    needs: upload-artifacts
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+      - name: Download all artifacts
+        uses: actions/download-artifact@v3
+      - name: Check expected artifacts exist
+        shell: bash
+        run: |
+          VERSIONS="stable-20221211 stable-20230418 stable-v2.13.5 stable-v2.14.6 default latest nightly-latest"
+          LANGUAGES="cpp csharp go java javascript python"
+          for version in $VERSIONS; do
+            for os in ubuntu-latest macos-latest; do
+              pushd "./my-debug-artifacts-$os-${version//./}"
+              echo "Artifacts from version $version on $os:"
+              for language in $LANGUAGES; do
+                echo "- Checking $language"
+                if [[ ! -f "$language.sarif" ]] ; then
+                  echo "Missing a SARIF file for $language"
+                  exit 1
+                fi
+                if [[ ! -f "my-db-$language.zip" ]] ; then
+                  echo "Missing a database bundle for $language"
+                  exit 1
+                fi
+                if [[ ! -d "$language/log" ]] ; then
+                  echo "Missing logs for $language"
+                  exit 1
+                fi
+              done
+              popd
+            done
+          done
+        env:
+          GO111MODULE: auto

.github/workflows/deflake.yml

@@ -1,106 +0,0 @@
-# Workflow runs on main, on a release branch, and that were triggered as part of a merge group have
-# already passed CI before being merged. Therefore if they fail, we should make sure that there
-# wasn't a transient failure by rerunning the failed jobs once before investigating further.
-name: Deflake
-
-on:
-  workflow_run:
-    types: [completed]
-    # Exclude workflows that have significant side effects, like publishing releases. It's OK to
-    # retry CodeQL analysis.
-    workflows:
-      - Check Expected Release Files
-      - Code-Scanning config CLI tests
-      - CodeQL action
-      - Manual Check - go
-      - "PR Check - All-platform bundle"
-      - "PR Check - Analysis kinds"
-      - "PR Check - Analyze: 'ref' and 'sha' from inputs"
-      - "PR Check - autobuild-action"
-      - "PR Check - Autobuild direct tracing (custom working directory)"
-      - "PR Check - Autobuild working directory"
-      - "PR Check - Build mode autobuild"
-      - "PR Check - Build mode manual"
-      - "PR Check - Build mode none"
-      - "PR Check - Build mode rollback"
-      - "PR Check - Bundle: Caching checks"
-      - "PR Check - Bundle: From nightly"
-      - "PR Check - Bundle: From toolcache"
-      - "PR Check - Bundle: Zstandard checks"
-      - "PR Check - C/C\\+\\+: autoinstalling dependencies (Linux)"
-      - "PR Check - C/C\\+\\+: autoinstalling dependencies is skipped (macOS)"
-      - "PR Check - C/C\\+\\+: disabling autoinstalling dependencies (Linux)"
-      - "PR Check - Clean up database cluster directory"
-      - "PR Check - CodeQL Bundle All"
-      - "PR Check - Config export"
-      - "PR Check - Config input"
-      - "PR Check - Custom source root"
-      - "PR Check - Debug artifact upload"
-      - "PR Check - Debug artifacts after failure"
-      - "PR Check - Diagnostic export"
-      - "PR Check - Export file baseline information"
-      - "PR Check - Extractor ram and threads options test"
-      - "PR Check - Go: Custom queries"
-      - "PR Check - Go: diagnostic when Go is changed after init step"
-      - "PR Check - Go: diagnostic when `file` is not installed"
-      - "PR Check - Go: tracing with autobuilder step"
-      - "PR Check - Go: tracing with custom build steps"
-      - "PR Check - Go: tracing with legacy workflow"
-      - "PR Check - Go: workaround for indirect tracing"
-      - "PR Check - Job run UUID added to SARIF"
-      - "PR Check - Language aliases"
-      - "PR Check - Local CodeQL bundle"
-      - "PR Check - Multi-language repository"
-      - "PR Check - Overlay database init fallback"
-      - "PR Check - Packaging: Action input"
-      - "PR Check - Packaging: Config and input"
-      - "PR Check - Packaging: Config and input passed to the CLI"
-      - "PR Check - Packaging: Config file"
-      - "PR Check - Packaging: Download using registries"
-      - "PR Check - Proxy test"
-      - "PR Check - Remote config file"
-      - "PR Check - Resolve environment"
-      - "PR Check - RuboCop multi-language"
-      - "PR Check - Ruby analysis"
-      - "PR Check - Rust analysis"
-      - "PR Check - Split workflow"
-      - "PR Check - Start proxy"
-      - "PR Check - Submit SARIF after failure"
-      - "PR Check - Swift analysis using a custom build command"
-      - "PR Check - Swift analysis using autobuild"
-      - "PR Check - Test different uses of `upload-sarif`"
-      - "PR Check - Test unsetting environment variables"
-      - "PR Check - Upload-sarif: ref and sha from inputs"
-      - "PR Check - Use a custom `checkout_path`"
-      - PR Checks
-      - Query filters tests
-      - Test that the workaround for python 3.12 on windows works
-
-jobs:
-  rerun-on-failure:
-    name: Rerun failed jobs
-    if: >-
-      github.event.workflow_run.conclusion == 'failure' &&
-      github.event.workflow_run.run_attempt == 1 &&
-      (
-        github.event.workflow_run.head_branch == 'main' ||
-        startsWith(github.event.workflow_run.head_branch, 'releases/') ||
-        github.event.workflow_run.event == 'merge_group'
-      )
-    runs-on: ubuntu-slim
-    permissions:
-      actions: write
-    steps:
-      - name: Rerun failed jobs in ${{ github.event.workflow_run.name }}
-        env:
-          GH_TOKEN: ${{ github.token }}
-          GH_REPO: ${{ github.repository }}
-          RUN_ID: ${{ github.event.workflow_run.id }}
-          RUN_NAME: ${{ github.event.workflow_run.name }}
-          RUN_URL: ${{ github.event.workflow_run.html_url }}
-        run: |
-          echo "Rerunning failed jobs for workflow run ${RUN_ID}"
-          gh run rerun "${RUN_ID}" --failed
-          echo "### Reran failed jobs :recycle:" >> "$GITHUB_STEP_SUMMARY"
-          echo "" >> "$GITHUB_STEP_SUMMARY"
-          echo "Workflow: [${RUN_NAME}](${RUN_URL})" >> "$GITHUB_STEP_SUMMARY"

.github/workflows/expected-queries-runs.yml

@@ -0,0 +1,46 @@
+name: Check queries that ran
+
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+
+jobs:
+  expected-queries:
+    name: Expected Queries Tests
+    env:
+      CODEQL_ACTION_TEST_MODE: true
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: latest
+    - uses: ./../action/init
+      with:
+        languages: javascript
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/analyze
+      with:
+        output: ${{ runner.temp }}/results
+        upload-database: false
+        upload: never
+
+    - name: Check Sarif
+      uses: ./../action/.github/actions/check-sarif
+      with:
+        sarif-file: ${{ runner.temp }}/results/javascript.sarif
+        queries-run: js/incomplete-hostname-regexp,js/path-injection
+        queries-not-run: foo,bar

.github/workflows/label-pr-size.yml

@@ -1,26 +0,0 @@
-name: Label PR with size
-
-on:
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - edited
-
-permissions:
-  contents: read
-  pull-requests: write
-
-jobs:
-  sizeup:
-    name: Label PR with size
-    runs-on: ubuntu-slim
-    if: github.event.pull_request.merged != true
-
-    steps:
-      - name: Run sizeup
-        uses: lerebear/sizeup-action@b7beb3dd273e36039e16e48e7bc690c189e61951 # 0.8.12
-        with:
-          token: "${{ secrets.GITHUB_TOKEN }}"
-          configuration-file-path: ".github/sizeup.yml"

.github/workflows/post-release-mergeback.yml

@@ -3,7 +3,7 @@
 #    tag
 # 2. Updates the `vN` tag to refer to this merge commit.
 # 3. Iff vN == vLatest, merges any changes from the release back into the main branch.
-#    Typically, this is two commits – one to update the version number and one to rebuild.
+#    Typically, this is two commits – one to update the version number and one to update dependencies.
 name: Tag release and merge back
 
 on:
@@ -18,23 +18,14 @@ on:
     branches:
       - releases/v*
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
   merge-back:
     runs-on: ubuntu-latest
-    environment: Automation
     if: github.repository == 'github/codeql-action'
     env:
       BASE_BRANCH: "${{ github.event.inputs.baseBranch || 'main' }}"
       HEAD_BRANCH: "${{ github.head_ref || github.ref }}"
 
-    permissions:
-      contents: write # needed to create tags and push commits
-      pull-requests: write
-
     steps:
       - name: Dump environment
         run: env
@@ -44,16 +35,10 @@ jobs:
           GITHUB_CONTEXT: '${{ toJson(github) }}'
         run: echo "${GITHUB_CONTEXT}"
 
-      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0  # ensure we have all tags and can push commits
-      - uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
-        with:
-          node-version: 24
-          cache: 'npm'
-
-      - name: Install JavaScript dependencies
-        run: npm ci
+      - uses: actions/setup-node@v4
 
       - name: Update git config
         run: |
@@ -123,43 +108,45 @@ jobs:
           # - `--force` since we're overwriting the `vN` tag
           git push origin --atomic --force refs/tags/"${VERSION}" refs/tags/"${major_version_tag}"
 
-      - name: Prepare partial Changelog
+      - name: Create mergeback branch
+        if: ${{ steps.check.outputs.exists != 'true' && endsWith(github.ref_name, steps.getVersion.outputs.latest_release_branch) }}
         env:
-          PARTIAL_CHANGELOG: "${{ runner.temp }}/partial_changelog.md"
-        run: |
-          npx tsx pr-checks/prepare-changelog.ts --output="$PARTIAL_CHANGELOG"
-
-          echo "::group::Partial CHANGELOG"
-          cat $PARTIAL_CHANGELOG
-          echo "::endgroup::"
-
-      - name: Generate token
-        uses: actions/create-github-app-token@bcd2ba49218906704ab6c1aa796996da409d3eb1 # v3.2.0
-        id: app-token
-        with:
-          app-id: ${{ vars.AUTOMATION_APP_ID }}
-          private-key: ${{ secrets.AUTOMATION_PRIVATE_KEY }}
-
-      - name: Create the GitHub release
-        if: steps.check.outputs.exists != 'true'
-        env:
-          PARTIAL_CHANGELOG: "${{ runner.temp }}/partial_changelog.md"
           VERSION: "${{ steps.getVersion.outputs.version }}"
-          GH_TOKEN: ${{ steps.app-token.outputs.token }}
+          NEW_BRANCH: "${{ steps.getVersion.outputs.newBranch }}"
+          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
         run: |
-          # Do not mark this release as latest. The most recent CLI release must be marked as latest.
-          gh release create \
-            "$VERSION" \
-            --latest=false \
-            --title "$VERSION" \
-            --notes-file "$PARTIAL_CHANGELOG"
+          set -exu
+          pr_title="Mergeback ${VERSION} ${HEAD_BRANCH} into ${BASE_BRANCH}"
+          pr_body=$(cat << EOF
+            This PR bumps the version number and updates the changelog after the ${VERSION} release.
 
-      - name: Create mergeback branch and PR
-        if: ${{ endsWith(github.ref_name, steps.getVersion.outputs.latest_release_branch) }}
-        uses: ./.github/actions/prepare-mergeback-branch
-        with:
-          base: "${{ env.BASE_BRANCH }}"
-          head: "${{ env.HEAD_BRANCH }}"
-          branch: "${{ steps.getVersion.outputs.newBranch }}"
-          version: "${{ steps.getVersion.outputs.version }}"
-          token: "${{ secrets.GITHUB_TOKEN }}"
+            Please do the following:
+
+            - [ ] Remove and re-add the "Update dependencies" label to the PR to trigger just this workflow.
+            - [ ] Wait for the "Update dependencies" workflow to push a commit updating the dependencies.
+            - [ ] Mark the PR as ready for review to trigger the full set of PR checks.
+            - [ ] Approve and merge the PR. When merging the PR, make sure "Create a merge commit" is
+                  selected rather than "Squash and merge" or "Rebase and merge".
+          EOF
+          )
+
+          # Update the version number ready for the next release
+          npm version patch --no-git-tag-version
+
+          # Update the changelog, adding a new version heading directly above the most recent existing one
+          awk '!f && /##/{print "'"## [UNRELEASED]\n\nNo user facing changes.\n"'"; f=1}1' CHANGELOG.md > temp && mv temp CHANGELOG.md
+          git add .
+          git commit -m "Update changelog and version after ${VERSION}"
+
+          git push origin "${NEW_BRANCH}"
+
+          # PR checks won't be triggered on PRs created by Actions. Therefore mark the PR as draft
+          # so that a maintainer can take the PR out of draft, thereby triggering the PR checks.
+          gh pr create \
+            --head "${NEW_BRANCH}" \
+            --base "${BASE_BRANCH}" \
+            --title "${pr_title}" \
+            --label "Update dependencies" \
+            --body "${pr_body}" \
+            --assignee "${GITHUB_ACTOR}" \
+            --draft

.github/workflows/pr-checks.yml

@@ -2,126 +2,122 @@ name: PR Checks
 
 on:
   push:
+    branches: [main, releases/v*]
   pull_request:
-  merge_group:
-    types: [checks_requested]
+    # Run checks on reopened draft PRs to support triggering PR checks on draft PRs that were opened
+    # by other workflows.
+    types: [opened, synchronize, reopened, ready_for_review]
   workflow_dispatch:
 
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: ${{ github.workflow }}-${{ github.ref }}
-
-defaults:
-  run:
-    shell: bash
-
 jobs:
-  unit-tests:
-    name: Unit Tests
-    if: github.triggering_actor != 'dependabot[bot]'
+  check-js:
+    name: Check JS
+    runs-on: ubuntu-latest
+    timeout-minutes: 45
+
+    strategy:
+      matrix:
+        node-types-version: [16.11, current] # we backport this matrix job in order to maintain the same check names
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Lint
+        run: npm run-script lint
+
+      - name: Update version of @types/node
+        if: matrix.node-types-version != 'current'
+        env:
+          NODE_TYPES_VERSION: ${{ matrix.node-types-version }}
+        run: |
+          # Export `NODE_TYPES_VERSION` so it's available to jq
+          export NODE_TYPES_VERSION="${NODE_TYPES_VERSION}"
+          contents=$(jq '.devDependencies."@types/node" = env.NODE_TYPES_VERSION' package.json)
+          echo "${contents}" > package.json
+          # Usually we run `npm install` on macOS to ensure that we pick up macOS-only dependencies.
+          # However we're not checking in the updated lockfile here, so it's fine to run
+          # `npm install` on Linux.
+          npm install
+
+          if [ ! -z "$(git status --porcelain)" ]; then
+            git config --global user.email "github-actions@github.com"
+            git config --global user.name "github-actions[bot]"
+            # The period in `git add --all .` ensures that we stage deleted files too.
+            git add --all .
+            git commit -m "Use @types/node=${NODE_TYPES_VERSION}"
+          fi
+
+      - name: Check generated JS
+        if: matrix.node-types-version != 'current' # we do not need to test the newer node on the v2 branch
+        run: .github/workflows/script/check-js.sh
+
+  check-node-modules:
+    name: Check modules up to date
+    runs-on: macos-latest
+    timeout-minutes: 45
+
+    steps:
+      - uses: actions/checkout@v4
+      - name: Check node modules up to date
+        run: .github/workflows/script/check-node-modules.sh
+
+  check-file-contents:
+    name: Check file contents
+    runs-on: ubuntu-latest
+    timeout-minutes: 45
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: 3.11
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          # When updating this, update the autogenerated code header in `sync.py` too.
+          pip install ruamel.yaml==0.17.31
+
+      # Ensure the generated PR check workflows are up to date.
+      - name: Verify PR checks up to date
+        run: .github/workflows/script/verify-pr-checks.sh
+
+  npm-test:
+    name: Unit Test
+    needs: [check-js, check-node-modules]
     strategy:
-      fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
-        node-version: [20, 24]
-    permissions:
-      contents: read
-      security-events: write # needed to upload ESLint results
     runs-on: ${{ matrix.os }}
     timeout-minutes: 45
 
-    concurrency:
-      cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-      group: pr-checks-unit-tests-${{ github.ref }}-${{ github.event_name }}-${{ matrix.os }}-node${{ matrix['node-version'] }}
-
     steps:
-      - name: Prepare git (Windows)
-        if: runner.os == 'Windows'
-        run: git config --global core.autocrlf false
-
-      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-
-      - name: Set up Node.js
-        uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
-        with:
-          node-version: ${{ matrix.node-version }}
-          cache: "npm"
-
-      - name: Install dependencies
+      - uses: actions/checkout@v4
+      - name: npm test
         run: |
-          # Use the system Bash shell to ensure we can run commands like `npm ci`
-          # that are not available in the default shell on Windows.
+          # Run any commands referenced in package.json using Bash, otherwise
+          # we won't be able to find them on Windows.
           npm config set script-shell bash
-          npm ci
+          npm test
 
-      - name: Verify compiled JS up to date
-        run: .github/workflows/script/check-js.sh
-
-      - name: Run unit tests
-        if: always()
-        run: npm test
-
-      - name: Lint
-        if: always() && matrix.os != 'windows-latest'
-        run: npm run lint-ci
-
-      - name: Upload sarif
-        uses: ./upload-sarif
-        # The merge queue deletes its `gh-readonly-queue` ref as soon as the queue entry resolves,
-        # so uploading against it races with that deletion. Both the `merge_group` run and the
-        # paired `push` run that the queue branch creates use that ref, so gate on the ref itself
-        # rather than the event. The same results are uploaded by the `pull_request` run and again
-        # by the `push` run on `main`.
-        if: matrix.os == 'ubuntu-latest' && matrix.node-version == 24 && !startsWith(github.ref, 'refs/heads/gh-readonly-queue/')
-        with:
-          sarif_file: eslint.sarif
-          category: eslint
-
-  # These checks do not need to be run as part of the same matrix that we use for the `unit-tests`
-  # job.
-  other-checks:
-    name: Other checks
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
+  check-node-version:
+    if: ${{ github.event.pull_request }}
+    name: Check Action Node versions
     runs-on: ubuntu-latest
-    timeout-minutes: 10
-
-    concurrency:
-      cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-      group: pr-checks-pr-checks-${{ github.ref }}-${{ github.event_name }}
+    timeout-minutes: 45
+    env:
+      BASE_REF: ${{ github.base_ref }}
 
     steps:
-      - name: Checkout repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-
-      - name: Set up Node.js
-        uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
-        with:
-          node-version: 24
-          cache: "npm"
-
-      - name: Install dependencies
-        id: install-deps
-        run: npm ci
-
-      - name: Verify PR checks up to date
-        if: ${{ !cancelled() && steps.install-deps.outcome == 'success' }}
-        run: .github/workflows/script/verify-pr-checks.sh
-
-      - name: Run pr-checks tests
-        if: ${{ !cancelled() && steps.install-deps.outcome == 'success' }}
-        working-directory: pr-checks
-        run: npx tsx --test
-
-      - name: Run `pr-checks/changenotes.mts` to ensure that all unreleased change notes are valid
-        if: ${{ !cancelled() && steps.install-deps.outcome == 'success' }}
-        run: npx tsx pr-checks/changenotes.mts validate
-
-      - name: Verify all Actions use the same Node version
-        id: head-version
+      - uses: actions/checkout@v4
+      - id: head-version
+        name: Verify all Actions use the same Node version
         run: |
-          NODE_VERSION=$(find . -path "*/node_modules" -prune -o -name "action.yml" -exec yq -o=json '.runs.using' {} \; | jq -rs '[.[] | select(. != null and startswith("node"))] | unique | .[]')
+          NODE_VERSION=$(find . -name "action.yml" -exec yq -e '.runs.using' {} \; | grep node | sort | uniq)
           echo "NODE_VERSION: ${NODE_VERSION}"
           if [[ $(echo "$NODE_VERSION" | wc -l) -gt 1 ]]; then
             echo "::error::More than one node version used in 'action.yml' files."
@@ -129,111 +125,22 @@ jobs:
           fi
           echo "node_version=${NODE_VERSION}" >> $GITHUB_OUTPUT
 
-      - name: Fetch base commit
-        id: fetch-base
-        # Forks and Dependabot PRs don't have permission to write comments, so skip the repo size
-        # check in those cases.
-        if: >-
-          github.event_name == 'pull_request' &&
-          github.event.pull_request.head.repo.full_name == github.repository &&
-          github.event.pull_request.user.login != 'dependabot[bot]'
-        env:
-          BASE_SHA: ${{ github.event.pull_request.base.sha }}
-          HEAD_SHA: ${{ github.event.pull_request.head.sha }}
-          GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        run: |
-          # Compare against the merge base so the size delta reflects only the commits actually
-          # added by this PR, ignoring any changes that have landed on the base branch since the
-          # PR branched off.
-          merge_base=$(gh api "repos/$GITHUB_REPOSITORY/compare/$BASE_SHA...$HEAD_SHA" --jq '.merge_base_commit.sha')
-          echo "merge_base=$merge_base" >> "$GITHUB_OUTPUT"
-          git fetch --no-tags --depth=1 origin "$merge_base" "$HEAD_SHA"
-
-      - name: Check repo size
-        if: steps.fetch-base.outcome == 'success'
-        working-directory: pr-checks
-        env:
-          BASE_REF: ${{ github.event.pull_request.base.ref }}
-          BASE_SHA: ${{ steps.fetch-base.outputs.merge_base }}
-          HEAD_SHA: ${{ github.event.pull_request.head.sha }}
-          RUN_URL: ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }}
-        run: npx tsx check-repo-size.ts --output-dir "$RUNNER_TEMP/repo-size"
-
-      - name: Upload repo size comment
-        if: steps.fetch-base.outcome == 'success'
-        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
-        with:
-          name: repo-size-comment
-          path: ${{ runner.temp }}/repo-size/
-          if-no-files-found: error
-
-      - name: "Backport: Check out base ref"
-        id: checkout-base
+      - id: checkout-base
+        name: 'Backport: Check out base ref'
         if: ${{ startsWith(github.head_ref, 'backport-') }}
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+        uses: actions/checkout@v4
         with:
-          ref: ${{ github.base_ref }}
+          ref: ${{ env.BASE_REF }}
 
-      - name: "Backport: Verify Node versions unchanged"
+      - name: 'Backport: Verify Node versions unchanged'
         if: steps.checkout-base.outcome == 'success'
         env:
           HEAD_VERSION: ${{ steps.head-version.outputs.node_version }}
         run: |
-          BASE_VERSION=$(find . -path "*/node_modules" -prune -o -name "action.yml" -exec yq -o=json '.runs.using' {} \; | jq -rs '[.[] | select(. != null and startswith("node"))] | unique | .[]')
+          BASE_VERSION=$(find . -name "action.yml" -exec yq -e '.runs.using' {} \; | grep node | sort | uniq)
           echo "HEAD_VERSION: ${HEAD_VERSION}"
           echo "BASE_VERSION: ${BASE_VERSION}"
           if [[ "$BASE_VERSION" != "$HEAD_VERSION" ]]; then
             echo "::error::Cannot change the Node version of an Action in a backport PR."
             exit 1
           fi
-
-  post-repo-size-comment:
-    name: Post repo size comment
-    needs: other-checks
-    # Keep write permissions isolated from the job that checks out and tests PR code. This job only
-    # posts the candidate comment body produced by the read-only `pr-checks` job.
-    if: >-
-      github.event_name == 'pull_request' &&
-      github.event.pull_request.head.repo.full_name == github.repository &&
-      github.event.pull_request.user.login != 'dependabot[bot]' &&
-      needs.other-checks.result == 'success'
-    permissions:
-      contents: read
-      pull-requests: write
-    runs-on: ubuntu-slim
-    timeout-minutes: 10
-
-    concurrency:
-      cancel-in-progress: true
-      group: check-repo-size-${{ github.event.pull_request.number }}
-
-    steps:
-      - name: Download repo size comment
-        uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c # v8.0.1
-        with:
-          name: repo-size-comment
-          path: repo-size-comment
-
-      - name: Post repo size comment
-        env:
-          COMMENT_MARKER: "<!-- repo-size-diff-bot -->"
-          GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-          PR_NUMBER: ${{ github.event.pull_request.number }}
-        run: |
-          significant=$(jq -r '.significant' repo-size-comment/metadata.json)
-          comment_id=$(
-            gh api "repos/$GITHUB_REPOSITORY/issues/$PR_NUMBER/comments" \
-              --paginate \
-              --jq ".[] | select(.body | contains(\"$COMMENT_MARKER\")) | .id" \
-              | head -n 1
-          )
-
-          if [[ -n "$comment_id" ]]; then
-            echo "Updating existing comment $comment_id."
-            gh api --method PATCH "repos/$GITHUB_REPOSITORY/issues/comments/$comment_id" --field body=@repo-size-comment/body.md
-          elif [[ "$significant" == "true" ]]; then
-            echo "Creating new repo size comment."
-            gh api --method POST "repos/$GITHUB_REPOSITORY/issues/$PR_NUMBER/comments" --field body=@repo-size-comment/body.md
-          else
-            echo "Skipping repo size comment because the delta is below the threshold and no sticky comment exists."
-          fi

.github/workflows/prepare-release.yml

@@ -1,77 +0,0 @@
-name: Prepare release
-on:
-  workflow_call:
-    outputs:
-      version:
-        description: "The version that is being released."
-        value: ${{ jobs.prepare.outputs.version }}
-      major_version:
-        description: "The major version of the release."
-        value: ${{ jobs.prepare.outputs.major_version }}
-      latest_tag:
-        description: "The most recent, existing release tag."
-        value: ${{ jobs.prepare.outputs.latest_tag }}
-      backport_source_branch:
-        description: "The release branch for the given tag."
-        value: ${{ jobs.prepare.outputs.backport_source_branch }}
-      backport_target_branches:
-        description: "JSON encoded list of branches to target with backports."
-        value: ${{ jobs.prepare.outputs.backport_target_branches }}
-
-  push:
-    paths:
-      - .github/workflows/prepare-release.yml
-
-defaults:
-  run:
-    shell: bash
-
-jobs:
-  prepare:
-    name: "Prepare release"
-    runs-on: ubuntu-latest
-    if: github.repository == 'github/codeql-action'
-
-    permissions:
-      contents: read
-
-    outputs:
-      version: ${{ steps.versions.outputs.version }}
-      major_version: ${{ steps.versions.outputs.major_version }}
-      latest_tag: ${{ steps.versions.outputs.latest_tag }}
-      backport_source_branch: ${{ steps.branches.outputs.backport_source_branch }}
-      backport_target_branches: ${{ steps.branches.outputs.backport_target_branches }}
-
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-        with:
-          fetch-depth: 0 # Need full history for calculation of diffs
-
-      - name: Configure runner for release
-        uses: ./.github/actions/release-initialise
-
-      - name: Get version tags
-        id: versions
-        run: |
-          VERSION="v$(jq '.version' -r 'package.json')"
-          echo "version=${VERSION}" >> $GITHUB_OUTPUT
-          MAJOR_VERSION=$(cut -d '.' -f1 <<< "${VERSION}")
-          echo "major_version=${MAJOR_VERSION}" >> $GITHUB_OUTPUT
-          LATEST_TAG=$(git tag --sort=-v:refname | grep -E '^v[0-9]+\.[0-9]+\.[0-9]+' | head -1)
-          echo "latest_tag=${LATEST_TAG}" >> $GITHUB_OUTPUT
-
-      - name: Determine older release branches
-        id: branches
-        uses: ./.github/actions/release-branches
-        with:
-          major_version: ${{ steps.versions.outputs.major_version }}
-          latest_tag: ${{ steps.versions.outputs.latest_tag }}
-
-      - name: Print release information
-        run: |
-          echo 'version: ${{ steps.versions.outputs.version }}'
-          echo 'major_version: ${{ steps.versions.outputs.major_version }}'
-          echo 'latest_tag: ${{ steps.versions.outputs.latest_tag }}'
-          echo 'backport_source_branch: ${{ steps.branches.outputs.backport_source_branch }}'
-          echo 'backport_target_branches: ${{ steps.branches.outputs.backport_target_branches }}'

.github/workflows/publish-immutable-action.yml

@@ -1,27 +0,0 @@
-name: 'Publish Immutable Action Version'
-
-on:
-  push:
-    tags:
-      # Match version tags, but not the major version tags.
-      - 'v[0-9]+.**'
-
-defaults:
-  run:
-    shell: bash
-
-jobs:
-  publish:
-    runs-on: ubuntu-slim
-    permissions:
-      contents: read
-      id-token: write
-      packages: write
-
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
-
-      - name: Publish immutable release
-        id: publish
-        uses: actions/publish-immutable-action@4bc8754ffc40f27910afb20287dbbbb675a4e978 # v0.0.4