Merge pull request #4220 from github/mbg/fix-action-state-type-inference

Fix type inference for `ActionState`

.github/workflows/__all-platform-bundle.yml

@@ -0,0 +1,99 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - All-platform bundle
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: all-platform-bundle-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  all-platform-bundle:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest-xlarge
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: All-platform bundle
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'true'
+          setup-kotlin: 'true'
+      - id: init
+        uses: ./../action/init
+        with:
+          # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__analysis-kinds.yml

@@ -0,0 +1,147 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Analysis kinds
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: analysis-kinds-${{github.ref}}
+jobs:
+  analysis-kinds:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+            analysis-kinds: code-scanning
+          - os: ubuntu-latest
+            version: linked
+            analysis-kinds: code-quality
+          - os: ubuntu-latest
+            version: linked
+            analysis-kinds: code-scanning,code-quality
+          - os: ubuntu-latest
+            version: linked
+            analysis-kinds: risk-assessment
+          - os: ubuntu-latest
+            version: nightly-latest
+            analysis-kinds: code-scanning
+          - os: ubuntu-latest
+            version: nightly-latest
+            analysis-kinds: code-quality
+          - os: ubuntu-latest
+            version: nightly-latest
+            analysis-kinds: code-scanning,code-quality
+          - os: ubuntu-latest
+            version: nightly-latest
+            analysis-kinds: risk-assessment
+    name: Analysis kinds
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          analysis-kinds: ${{ matrix.analysis-kinds }}
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+          post-processed-sarif-path: '${{ runner.temp }}/post-processed'
+
+      - name: Upload SARIF files
+        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
+        with:
+          name: |
+            analysis-kinds-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}
+          path: '${{ runner.temp }}/results/*.sarif'
+          retention-days: 7
+
+      - name: Upload post-processed SARIF
+        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
+        with:
+          name: |
+            post-processed-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}
+          path: '${{ runner.temp }}/post-processed'
+          retention-days: 7
+          if-no-files-found: error
+
+      - name: Check quality query does not appear in security SARIF
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        env:
+          SARIF_PATH: '${{ runner.temp }}/results/javascript.sarif'
+          EXPECT_PRESENT: 'false'
+        with:
+          script: ${{ env.CHECK_SCRIPT }}
+      - name: Check quality query appears in quality SARIF
+        if: contains(matrix.analysis-kinds, 'code-quality')
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        env:
+          SARIF_PATH: '${{ runner.temp }}/results/javascript.quality.sarif'
+          EXPECT_PRESENT: 'true'
+        with:
+          script: ${{ env.CHECK_SCRIPT }}
+    env:
+      CODEQL_ACTION_RISK_ASSESSMENT_ID: 1
+      CHECK_SCRIPT: |
+        const fs = require('fs');
+
+        const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+        const expectPresent = JSON.parse(process.env['EXPECT_PRESENT']);
+        const run = sarif.runs[0];
+        const extensions = run.tool.extensions;
+
+        if (extensions === undefined) {
+          core.setFailed('`extensions` property not found in the SARIF run property bag.');
+        }
+
+        // ID of a query we want to check the presence for
+        const targetId = 'js/regex/always-matches';
+        const found = extensions.find(extension => extension.rules && extension.rules.find(rule => rule.id === targetId));
+
+        if (found && expectPresent) {
+          console.log(`Found rule with id '${targetId}'.`);
+        } else if (!found && !expectPresent) {
+          console.log(`Rule with id '${targetId}' was not found.`);
+        } else {
+          core.setFailed(`${ found ? "Found" : "Didn't find" } rule ${targetId}`);
+        }
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__analyze-ref-input.yml

@@ -0,0 +1,97 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: "PR Check - Analyze: 'ref' and 'sha' from inputs"
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: analyze-ref-input-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  analyze-ref-input:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: "Analyze: 'ref' and 'sha' from inputs"
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: cpp,csharp,java,javascript,python
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{ github.sha }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          ref: 'refs/heads/main'
+          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-action.yml

@@ -0,0 +1,96 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - autobuild-action
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: autobuild-action-${{github.ref}}-${{inputs.dotnet-version}}
+jobs:
+  autobuild-action:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: autobuild-action
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: csharp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        env:
+          # Explicitly disable the CLR tracer.
+          COR_ENABLE_PROFILING: ''
+          COR_PROFILER: ''
+          COR_PROFILER_PATH_64: ''
+          CORECLR_ENABLE_PROFILING: ''
+          CORECLR_PROFILER: ''
+          CORECLR_PROFILER_PATH_64: ''
+      - uses: ./../action/analyze
+      - name: Check database
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d csharp ]]; then
+            echo "Did not find a C# database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-direct-tracing-with-working-dir.yml

@@ -0,0 +1,101 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Autobuild direct tracing (custom working directory)
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      java-version:
+        type: string
+        description: The version of Java to install
+        required: false
+        default: '17'
+  workflow_call:
+    inputs:
+      java-version:
+        type: string
+        description: The version of Java to install
+        required: false
+        default: '17'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: autobuild-direct-tracing-with-working-dir-${{github.ref}}-${{inputs.java-version}}
+jobs:
+  autobuild-direct-tracing-with-working-dir:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Autobuild direct tracing (custom working directory)
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install Java
+        uses: actions/setup-java@de7274f081f381c8f8158605e0321c36c376e2e6 # v6.0.1
+        with:
+          java-version: ${{ inputs.java-version || '17' }}
+          distribution: temurin
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        run: |
+          # Make sure that Gradle build succeeds in autobuild-dir ...
+          cp -a ../action/tests/java-repo autobuild-dir
+          # ... and fails if attempted in the current directory
+          echo > build.gradle
+      - uses: ./../action/init
+        with:
+          build-mode: autobuild
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Check that indirect tracing is disabled
+        run: |
+          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
+            echo "Expected indirect tracing to be disabled, but the" \
+              "CODEQL_RUNNER environment variable is set."
+            exit 1
+          fi
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_AUTOBUILD_BUILD_MODE_DIRECT_TRACING: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-working-dir.yml

@@ -0,0 +1,78 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Autobuild working directory
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: autobuild-working-dir-${{github.ref}}
+jobs:
+  autobuild-working-dir:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Autobuild working directory
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        run: |
+          # Make sure that Gradle build succeeds in autobuild-dir ...
+          cp -a ../action/tests/java-repo autobuild-dir
+          # ... and fails if attempted in the current directory
+          echo > build.gradle
+      - uses: ./../action/init
+        with:
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+      - uses: ./../action/analyze
+      - name: Check database
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d java ]]; then
+            echo "Did not find a Java database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-autobuild.yml

@@ -0,0 +1,118 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Build mode autobuild
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      java-version:
+        type: string
+        description: The version of Java to install
+        required: false
+        default: '17'
+  workflow_call:
+    inputs:
+      java-version:
+        type: string
+        description: The version of Java to install
+        required: false
+        default: '17'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: build-mode-autobuild-${{github.ref}}-${{inputs.java-version}}
+jobs:
+  build-mode-autobuild:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Build mode autobuild
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install Java
+        uses: actions/setup-java@de7274f081f381c8f8158605e0321c36c376e2e6 # v6.0.1
+        with:
+          java-version: ${{ inputs.java-version || '17' }}
+          distribution: temurin
+      - name: Install yq
+        if: runner.os == 'Windows'
+        env:
+          YQ_PATH: ${{ runner.temp }}/yq
+          YQ_VERSION: v4.50.1
+        run: |-
+          gh release download --repo mikefarah/yq --pattern "yq_windows_amd64.exe" "$YQ_VERSION" -O "$YQ_PATH/yq.exe"
+          echo "$YQ_PATH" >> "$GITHUB_PATH"
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Set up Java test repo configuration
+        run: |
+          mv * .github ../action/tests/multi-language-repo/
+          mv ../action/tests/multi-language-repo/.github/workflows .github
+          mv ../action/tests/java-repo/* .
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: autobuild
+          db-location: '${{ runner.temp }}/customDbLocation'
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "autobuild" ]]; then
+            echo "Expected build mode to be 'autobuild' but was $build_mode"
+            exit 1
+          fi
+
+      - name: Check that indirect tracing is disabled
+        run: |
+          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
+            echo "Expected indirect tracing to be disabled, but the" \
+              "CODEQL_RUNNER environment variable is set."
+            exit 1
+          fi
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-manual.yml

@@ -0,0 +1,107 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Build mode manual
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: build-mode-manual-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  build-mode-manual:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Build mode manual
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: manual
+          db-location: '${{ runner.temp }}/customDbLocation'
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "manual" ]]; then
+            echo "Expected build mode to be 'manual' but was $build_mode"
+            exit 1
+          fi
+
+      - name: Build code
+        run: ./build.sh
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-none.yml

@@ -0,0 +1,81 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Build mode none
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: build-mode-none-${{github.ref}}
+jobs:
+  build-mode-none:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Build mode none
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: none
+          db-location: '${{ runner.temp }}/customDbLocation'
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "none" ]]; then
+            echo "Expected build mode to be 'none' but was $build_mode"
+            exit 1
+          fi
+
+      # The latest nightly supports omitting the autobuild Action when the build mode is specified.
+      - uses: ./../action/autobuild
+        if: matrix.version != 'nightly-latest'
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-rollback.yml

@@ -0,0 +1,82 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Build mode rollback
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: build-mode-rollback-${{github.ref}}
+jobs:
+  build-mode-rollback:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Build mode rollback
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Set up Java test repo configuration
+        run: |
+          mv * .github ../action/tests/multi-language-repo/
+          mv ../action/tests/multi-language-repo/.github/workflows .github
+          mv ../action/tests/java-repo/* .
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: none
+          db-location: '${{ runner.temp }}/customDbLocation'
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "autobuild" ]]; then
+            echo "Expected build mode to be 'autobuild' but was $build_mode"
+            exit 1
+          fi
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_DISABLE_JAVA_BUILDLESS: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-from-nightly.yml

@@ -0,0 +1,67 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Bundle: From nightly'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: bundle-from-nightly-${{github.ref}}
+jobs:
+  bundle-from-nightly:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: 'Bundle: From nightly'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - id: init
+        uses: ./../action/init
+        env:
+          CODEQL_ACTION_FORCE_NIGHTLY: true
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: javascript
+      - name: Fail if the CodeQL version is not a nightly
+        if: ${{ !contains(steps.init.outputs.codeql-version, '+') }}
+        run: exit 1
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-from-toolcache.yml

@@ -0,0 +1,83 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Bundle: From toolcache'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: bundle-from-toolcache-${{github.ref}}
+jobs:
+  bundle-from-toolcache:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: toolcache
+    name: 'Bundle: From toolcache'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install @actions/tool-cache
+        run: npm install @actions/tool-cache@3
+      - name: Check toolcache contains CodeQL
+        continue-on-error: true
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            if (allCodeqlVersions.length === 0) {
+              throw new Error(`CodeQL could not be found in the toolcache`);
+            }
+      - id: setup-codeql
+        uses: ./../action/setup-codeql
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Check CodeQL is installed within the toolcache
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
+            if (allCodeqlVersions.length === 0) {
+              throw new Error('CodeQL not found in toolcache');
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-toolcache.yml

@@ -0,0 +1,104 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Bundle: Caching checks'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: bundle-toolcache-${{github.ref}}
+jobs:
+  bundle-toolcache:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: 'Bundle: Caching checks'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            fs.rmdirSync(codeqlPath, { recursive: true });
+      - name: Install @actions/tool-cache
+        run: npm install @actions/tool-cache@3
+      - name: Check toolcache does not contain CodeQL
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            if (allCodeqlVersions.length !== 0) {
+              throw new Error(`CodeQL should not be found in the toolcache, but found ${allCodeqlVersions}`);
+            }
+            console.log('No versions of CodeQL found in the toolcache');
+      - id: init
+        uses: ./../action/init
+        with:
+          # Request multiple languages so this check uses the combined bundle.
+          languages: javascript,python
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Check CodeQL is installed within the toolcache
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
+            if (allCodeqlVersions.length === 0) {
+              throw new Error('CodeQL not found in toolcache');
+            }
+            if (allCodeqlVersions.length > 1) {
+              throw new Error('Multiple CodeQL versions found in toolcache');
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cleanup-db-cluster-dir.yml

@@ -0,0 +1,77 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Clean up database cluster directory
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: cleanup-db-cluster-dir-${{github.ref}}
+jobs:
+  cleanup-db-cluster-dir:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Clean up database cluster directory
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Add a file to the database cluster directory
+        run: |
+          mkdir -p "${{ runner.temp }}/customDbLocation/javascript"
+          touch "${{ runner.temp }}/customDbLocation/javascript/a-file-to-clean-up.txt"
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: none
+          db-location: '${{ runner.temp }}/customDbLocation'
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate file cleaned up
+        run: |
+          if [[ -f "${{ runner.temp }}/customDbLocation/javascript/a-file-to-clean-up.txt" ]]; then
+            echo "File was not cleaned up"
+            exit 1
+          fi
+          echo "File was cleaned up"
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__config-export.yml

@@ -0,0 +1,100 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Config export
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: config-export-${{github.ref}}
+jobs:
+  config-export:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Config export
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          queries: security-extended
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
+        with:
+          name: config-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: '${{ runner.temp }}/results/javascript.sarif'
+          retention-days: 7
+      - name: Check config properties appear in SARIF
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        env:
+          SARIF_PATH: '${{ runner.temp }}/results/javascript.sarif'
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+            const configSummary = run.properties.codeqlConfigSummary;
+
+            if (configSummary === undefined) {
+              core.setFailed('`codeqlConfigSummary` property not found in the SARIF run property bag.');
+            }
+            if (configSummary.disableDefaultQueries !== false) {
+              core.setFailed('`disableDefaultQueries` property incorrect: expected false, got ' +
+                `${JSON.stringify(configSummary.disableDefaultQueries)}.`);
+            }
+            const expectedQueries = [{ type: 'builtinSuite', uses: 'security-extended' }];
+            // Use JSON.stringify to deep-equal the arrays.
+            if (JSON.stringify(configSummary.queries) !== JSON.stringify(expectedQueries)) {
+              core.setFailed(`\`queries\` property incorrect: expected ${JSON.stringify(expectedQueries)}, got ` +
+                `${JSON.stringify(configSummary.queries)}.`);
+            }
+            core.info('Finished config export tests.');
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__config-input.yml

@@ -0,0 +1,94 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Config input
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: config-input-${{github.ref}}
+jobs:
+  config-input:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Config input
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install Node.js
+        uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
+        with:
+          node-version: 20.x
+          cache: npm
+      - name: Install newer npm
+        run: npm install -g npm@11.19.1
+      - name: Install dependencies
+        run: npm ci
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Copy queries into workspace
+        run: |
+          cp -a ../action/queries .
+
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: javascript
+          build-mode: none
+          config: |
+            disable-default-queries: true
+            queries:
+              - name: Run custom query
+                uses: ./queries/default-setup-environment-variables.ql
+            paths-ignore:
+              - tests
+              - lib
+
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+
+      - name: Check SARIF
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run: javascript/codeql-action/default-setup-env-vars
+          queries-not-run: javascript/codeql-action/default-setup-context-properties
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cpp-deptrace-disabled.yml

@@ -0,0 +1,79 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - C/C++: disabling autoinstalling dependencies (Linux)'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: cpp-deptrace-disabled-${{github.ref}}
+jobs:
+  cpp-deptrace-disabled:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'C/C++: disabling autoinstalling dependencies (Linux)'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        run: |
+          cp -a ../action/tests/cpp-autobuild autobuild-dir
+      - uses: ./../action/init
+        with:
+          languages: cpp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+        env:
+          CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: false
+      - run: |
+          if ls /usr/bin/errno; then
+            echo "C/C++ autobuild installed errno, but it should not have since auto-install dependencies is disabled."
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cpp-deptrace-enabled-on-macos.yml

@@ -0,0 +1,79 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - C/C++: autoinstalling dependencies is skipped (macOS)'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: cpp-deptrace-enabled-on-macos-${{github.ref}}
+jobs:
+  cpp-deptrace-enabled-on-macos:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: macos-latest
+            version: nightly-latest
+    name: 'C/C++: autoinstalling dependencies is skipped (macOS)'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        run: |
+          cp -a ../action/tests/cpp-autobuild autobuild-dir
+      - uses: ./../action/init
+        with:
+          languages: cpp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+        env:
+          CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
+      - run: |
+          if ! ls /usr/bin/errno; then
+            echo "As expected, CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES is a no-op on macOS"
+          else
+            echo "CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES should not have had any effect on macOS"
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cpp-deptrace-enabled.yml

@@ -0,0 +1,79 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - C/C++: autoinstalling dependencies (Linux)'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: cpp-deptrace-enabled-${{github.ref}}
+jobs:
+  cpp-deptrace-enabled:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'C/C++: autoinstalling dependencies (Linux)'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        run: |
+          cp -a ../action/tests/cpp-autobuild autobuild-dir
+      - uses: ./../action/init
+        with:
+          languages: cpp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+        env:
+          CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
+      - run: |
+          if ! ls /usr/bin/errno; then
+            echo "Did not autoinstall errno"
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__diagnostics-export.yml

@@ -0,0 +1,136 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Diagnostic export
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: diagnostics-export-${{github.ref}}
+jobs:
+  diagnostics-export:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Diagnostic export
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Add test diagnostics
+        env:
+          CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
+        run: |
+          "$CODEQL_PATH" database add-diagnostic \
+            "$RUNNER_TEMP/codeql_databases/javascript" \
+            --file-path /path/to/file \
+            --plaintext-message "Plaintext message" \
+            --source-id "lang/diagnostics/example" \
+            --source-name "Diagnostic name" \
+            --ready-for-status-page
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
+        with:
+          name: diagnostics-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: '${{ runner.temp }}/results/javascript.sarif'
+          retention-days: 7
+      - name: Check diagnostics appear in SARIF
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        env:
+          SARIF_PATH: '${{ runner.temp }}/results/javascript.sarif'
+        with:
+          script: |
+            const fs = require('fs');
+
+            function checkStatusPageNotification(n) {
+              const expectedMessage = 'Plaintext message';
+              if (n.message.text !== expectedMessage) {
+                core.setFailed(`Expected the status page diagnostic to have the message '${expectedMessage}', but found '${n.message.text}'.`);
+              }
+              if (n.locations.length !== 1) {
+                core.setFailed(`Expected the status page diagnostic to have exactly 1 location, but found ${n.locations.length}.`);
+              }
+            }
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const statusPageNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'lang/diagnostics/example' && n.properties?.visibility?.statusPage
+            );
+            if (statusPageNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${statusPageNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+            checkStatusPageNotification(statusPageNotifications[0]);
+
+            const notifications = run.tool.driver.notifications;
+            const diagnosticNotification = notifications.filter(n =>
+              n.id === 'lang/diagnostics/example' && n.name === 'lang/diagnostics/example' &&
+                n.fullDescription.text === 'Diagnostic name'
+            );
+            if (diagnosticNotification.length !== 1) {
+              core.setFailed(
+                'Expected exactly one notification for this diagnostic in the ' +
+                  `'runs[].tool.driver.notifications[]' SARIF property, but found ` +
+                  `${diagnosticNotification.length}. All notifications: ` +
+                  `${JSON.stringify(notifications)}.`
+              );
+            }
+
+            core.info('Finished diagnostic export test');
+    env:
+      CODEQL_ACTION_EXPORT_DIAGNOSTICS: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__export-file-baseline-information.yml

@@ -0,0 +1,128 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Export file baseline information
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: export-file-baseline-information-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  export-file-baseline-information:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Export file baseline information
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+      - name: Upload SARIF
+        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
+        with:
+          name: with-baseline-information-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: '${{ runner.temp }}/results/javascript.sarif'
+          retention-days: 7
+      - name: Check results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          expected_baseline_languages="c csharp go java kotlin javascript python ruby"
+          if [[ $RUNNER_OS == "macOS" ]]; then
+            expected_baseline_languages+=" swift"
+          fi
+
+          for lang in ${expected_baseline_languages}; do
+            rule_name="cli/expected-extracted-files/${lang}"
+            found_notification=$(jq --arg rule_name "${rule_name}" '[.runs[0].tool.driver.notifications |
+              select(. != null) | flatten | .[].id] | any(. == $rule_name)' javascript.sarif)
+            if [[ "${found_notification}" != "true" ]]; then
+              echo "Expected SARIF output to contain notification '${rule_name}', but found no such notification."
+              exit 1
+            else
+              echo "Found notification '${rule_name}'."
+            fi
+          done
+    env:
+      CODEQL_ACTION_SKIP_FILE_COVERAGE_ON_PRS: false
+      CODEQL_ACTION_SUBLANGUAGE_FILE_COVERAGE: true
+      CODEQL_ACTION_PER_LANGUAGE_BUNDLES: false
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__extractor-ram-threads.yml

@@ -0,0 +1,80 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Extractor ram and threads options test
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: extractor-ram-threads-${{github.ref}}
+jobs:
+  extractor-ram-threads:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Extractor ram and threads options test
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: java
+          ram: 230
+          threads: 1
+      - name: Assert Results
+        run: |
+          if [ "${CODEQL_RAM}" != "230" ]; then
+            echo "CODEQL_RAM is '${CODEQL_RAM}' instead of 230"
+            exit 1
+          fi
+          if [ "${CODEQL_EXTRACTOR_JAVA_RAM}" != "230" ]; then
+            echo "CODEQL_EXTRACTOR_JAVA_RAM is '${CODEQL_EXTRACTOR_JAVA_RAM}' instead of 230"
+            exit 1
+          fi
+          if [ "${CODEQL_THREADS}" != "1" ]; then
+            echo "CODEQL_THREADS is '${CODEQL_THREADS}' instead of 1"
+            exit 1
+          fi
+          if [ "${CODEQL_EXTRACTOR_JAVA_THREADS}" != "1" ]; then
+            echo "CODEQL_EXTRACTOR_JAVA_THREADS is '${CODEQL_EXTRACTOR_JAVA_THREADS}' instead of 1"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__global-proxy.yml

@@ -0,0 +1,101 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Proxy test
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: global-proxy-${{github.ref}}
+jobs:
+  global-proxy:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Proxy test
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'false'
+      - name: Block direct internet access to force proxy usage
+        run: |
+          apt-get update -qq && apt-get install -y -qq iptables >/dev/null 2>&1
+          PROXY_IP=$(getent hosts squid-proxy | awk '{ print $1 }')
+          echo "Squid proxy IP: $PROXY_IP"
+          # Allow all traffic to the proxy container
+          iptables -A OUTPUT -d "$PROXY_IP" -j ACCEPT
+          # Allow DNS resolution
+          iptables -A OUTPUT -p udp --dport 53 -j ACCEPT
+          iptables -A OUTPUT -p tcp --dport 53 -j ACCEPT
+          # Allow loopback
+          iptables -A OUTPUT -o lo -j ACCEPT
+          # Allow already-established connections (from checkout/prepare-test)
+          iptables -A OUTPUT -m conntrack --ctstate ESTABLISHED,RELATED -j ACCEPT
+          # Block all other outbound HTTP and HTTPS, ensuring direct access fails
+          iptables -A OUTPUT -p tcp --dport 80 -j REJECT --reject-with tcp-reset
+          iptables -A OUTPUT -p tcp --dport 443 -j REJECT --reject-with tcp-reset
+          echo "Direct HTTP/HTTPS access is now blocked - all traffic must go through the proxy"
+
+      - name: Set proxy environment variables
+        shell: bash
+        run: |
+          echo "http_proxy=http://squid-proxy:3128" >> $GITHUB_ENV
+          echo "HTTP_PROXY=http://squid-proxy:3128" >> $GITHUB_ENV
+          echo "https_proxy=http://squid-proxy:3128" >> $GITHUB_ENV
+          echo "HTTPS_PROXY=http://squid-proxy:3128" >> $GITHUB_ENV
+
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TOLERATE_MISSING_GIT_VERSION: true
+      CODEQL_ACTION_TEST_MODE: true
+    container:
+      image: ubuntu:22.04
+      options: --cap-add=NET_ADMIN
+    services:
+      squid-proxy:
+        image: ubuntu/squid:latest
+        ports:
+          - 3128:3128

.github/workflows/__go-custom-queries.yml

@@ -0,0 +1,97 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: Custom queries'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: go-custom-queries-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  go-custom-queries:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'Go: Custom queries'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: go
+          config-file: ./.github/codeql/custom-queries.yml
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-indirect-tracing-workaround-diagnostic.yml

@@ -0,0 +1,109 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: diagnostic when Go is changed after init step'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: go-indirect-tracing-workaround-diagnostic-${{github.ref}}-${{inputs.go-version}}
+jobs:
+  go-indirect-tracing-workaround-diagnostic:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: 'Go: diagnostic when Go is changed after init step'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      # Deliberately change Go after the `init` step
+      - uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: '1.20'
+      - name: Build code
+        run: go build main.go
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+      - name: Check diagnostic appears in SARIF
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        env:
+          SARIF_PATH: '${{ runner.temp }}/results/go.sarif'
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const statusPageNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'go/workflow/go-installed-after-codeql-init' && n.properties?.visibility?.statusPage
+            );
+            if (statusPageNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${statusPageNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-indirect-tracing-workaround-no-file-program.yml

@@ -0,0 +1,110 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: diagnostic when `file` is not installed'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: go-indirect-tracing-workaround-no-file-program-${{github.ref}}-${{inputs.go-version}}
+jobs:
+  go-indirect-tracing-workaround-no-file-program:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: 'Go: diagnostic when `file` is not installed'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove `file` program
+        run: |
+          echo $(which file)
+          sudo rm -rf $(which file)
+          echo $(which file)
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: go build main.go
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+      - name: Check diagnostic appears in SARIF
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        env:
+          SARIF_PATH: '${{ runner.temp }}/results/go.sarif'
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const statusPageNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'go/workflow/file-program-unavailable' && n.properties?.visibility?.statusPage
+            );
+            if (statusPageNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${statusPageNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-indirect-tracing-workaround.yml

@@ -0,0 +1,104 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: workaround for indirect tracing'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: go-indirect-tracing-workaround-${{github.ref}}-${{inputs.go-version}}
+jobs:
+  go-indirect-tracing-workaround:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: 'Go: workaround for indirect tracing'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: go build main.go
+      - uses: ./../action/analyze
+      - run: |
+          if [[ -z "${CODEQL_ACTION_GO_BINARY}" ]]; then
+            echo "Expected the workaround for indirect tracing of static binaries to trigger, but the" \
+              "CODEQL_ACTION_GO_BINARY environment variable is not set."
+            exit 1
+          fi
+          if [[ ! -f "${CODEQL_ACTION_GO_BINARY}" ]]; then
+            echo "CODEQL_ACTION_GO_BINARY is set, but the corresponding script does not exist."
+            exit 1
+          fi
+
+
+          # Once we start running Bash 4.2 in all environments, we can replace the
+          # `! -z` flag with the more elegant `-v` which confirms that the variable
+          # is actually unset and not potentially set to a blank value.
+          if [[ ! -z "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" ]]; then
+            echo "Expected the Go autobuilder not to be run, but the" \
+              "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was set."
+            exit 1
+          fi
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-tracing-autobuilder.yml

@@ -0,0 +1,110 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: tracing with autobuilder step'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: go-tracing-autobuilder-${{github.ref}}-${{inputs.go-version}}
+jobs:
+  go-tracing-autobuilder:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.21.4
+          - os: ubuntu-latest
+            version: stable-v2.22.4
+          - os: ubuntu-latest
+            version: stable-v2.23.9
+          - os: ubuntu-latest
+            version: stable-v2.24.3
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: 'Go: tracing with autobuilder step'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+      - uses: ./../action/analyze
+      - run: |
+          if [[ "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" != true ]]; then
+            echo "Expected the Go autobuilder to be run, but the" \
+              "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was not true."
+            exit 1
+          fi
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-tracing-custom-build-steps.yml

@@ -0,0 +1,113 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: tracing with custom build steps'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: go-tracing-custom-build-steps-${{github.ref}}-${{inputs.go-version}}
+jobs:
+  go-tracing-custom-build-steps:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.21.4
+          - os: ubuntu-latest
+            version: stable-v2.22.4
+          - os: ubuntu-latest
+            version: stable-v2.23.9
+          - os: ubuntu-latest
+            version: stable-v2.24.3
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: 'Go: tracing with custom build steps'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: go build main.go
+      - uses: ./../action/analyze
+      - run: |
+          # Once we start running Bash 4.2 in all environments, we can replace the
+          # `! -z` flag with the more elegant `-v` which confirms that the variable
+          # is actually unset and not potentially set to a blank value.
+          if [[ ! -z "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" ]]; then
+            echo "Expected the Go autobuilder not to be run, but the" \
+              "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was set."
+            exit 1
+          fi
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-tracing-legacy-workflow.yml

@@ -0,0 +1,104 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: tracing with legacy workflow'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: go-tracing-legacy-workflow-${{github.ref}}-${{inputs.go-version}}
+jobs:
+  go-tracing-legacy-workflow:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.21.4
+          - os: ubuntu-latest
+            version: stable-v2.22.4
+          - os: ubuntu-latest
+            version: stable-v2.23.9
+          - os: ubuntu-latest
+            version: stable-v2.24.3
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: 'Go: tracing with legacy workflow'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+      - run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__init-with-registries.yml

@@ -0,0 +1,119 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Packaging: Download using registries'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: init-with-registries-${{github.ref}}
+jobs:
+  init-with-registries:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'Packaging: Download using registries'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      packages: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Init with registries
+        uses: ./../action/init
+        with:
+          db-location: '${{ runner.temp }}/customDbLocation'
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          config-file: ./.github/codeql/codeql-config-registries.yml
+          languages: javascript
+          registries: |
+            - url: "https://ghcr.io/v2/"
+              packages: "*/*"
+              token: "${{ secrets.GITHUB_TOKEN }}"
+
+      - name: Verify packages installed
+        run: |
+          PRIVATE_PACK="$HOME/.codeql/packages/codeql-testing/private-pack"
+          CODEQL_PACK1="$HOME/.codeql/packages/codeql-testing/codeql-pack1"
+
+          if [[ -d $PRIVATE_PACK ]]
+          then
+              echo "$PRIVATE_PACK was installed."
+          else
+              echo "::error $PRIVATE_PACK pack was not installed."
+              exit 1
+          fi
+
+          if [[ -d $CODEQL_PACK1 ]]
+          then
+              echo "$CODEQL_PACK1 was installed."
+          else
+              echo "::error $CODEQL_PACK1 pack was not installed."
+              exit 1
+          fi
+
+      - name: Verify qlconfig.yml file was created
+        run: |
+          QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
+          echo "Expected qlconfig.yml file to be created at $QLCONFIG_PATH"
+          if [[ -f $QLCONFIG_PATH ]]
+          then
+              echo "qlconfig.yml file was created."
+          else
+              echo "::error qlconfig.yml file was not created."
+              exit 1
+          fi
+
+      - name: Verify contents of qlconfig.yml
+        run: |
+          QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
+          cat $QLCONFIG_PATH | yq -e '.registries[] | select(.url == "https://ghcr.io/v2/") | select(.packages == "*/*")'
+          if [[ $? -eq 0 ]]
+          then
+              echo "Registry was added to qlconfig.yml file."
+          else
+              echo "::error Registry was not added to qlconfig.yml file."
+              echo "Contents of qlconfig.yml file:"
+              cat $QLCONFIG_PATH
+              exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__javascript-source-root.yml

@@ -0,0 +1,80 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Custom source root
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: javascript-source-root-${{github.ref}}
+jobs:
+  javascript-source-root:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Custom source root
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Move codeql-action
+        run: |
+          mkdir ../new-source-root
+          mv * ../new-source-root
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          source-root: ../new-source-root
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          skip-queries: true
+      - name: Assert database exists
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d javascript ]]; then
+            echo "Did not find a JavaScript database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__job-run-uuid-sarif.yml

@@ -0,0 +1,81 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Job run UUID added to SARIF
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: job-run-uuid-sarif-${{github.ref}}
+jobs:
+  job-run-uuid-sarif:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Job run UUID added to SARIF
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+      - name: Upload SARIF
+        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
+        with:
+          name: ${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: '${{ runner.temp }}/results/javascript.sarif'
+          retention-days: 7
+      - name: Check results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          actual=$(jq -r '.runs[0].properties.jobRunUuid' javascript.sarif)
+          if [[ "$actual" != "$CODEQL_ACTION_JOB_RUN_UUID" ]]; then
+            echo "Expected SARIF output to contain job run UUID '$CODEQL_ACTION_JOB_RUN_UUID', but found '$actual'."
+            exit 1
+          else
+            echo "Found job run UUID '$actual'."
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__language-aliases.yml

@@ -0,0 +1,72 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Language aliases
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: language-aliases-${{github.ref}}
+jobs:
+  language-aliases:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Language aliases
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: C#,java-kotlin,typescript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: 'Check languages'
+        run: |
+          expected_languages="csharp,java,javascript"
+          actual_languages=$(jq -r '.languages | join(",")' "$RUNNER_TEMP"/config)
+
+          if [ "$expected_languages" != "$actual_languages" ]; then
+            echo "Resolved languages did not match expected list. " \
+              "Expected languages: $expected_languages. Actual languages: $actual_languages."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__linux-arm64.yml

@@ -0,0 +1,106 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Linux Arm64
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: linux-arm64-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  linux-arm64:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-24.04-arm
+            version: nightly-latest
+    name: Linux Arm64
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: ${{ env.LANGUAGES }}
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          upload-database: false
+      - name: Assert databases exist
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          for lang in ${LANGUAGES//,/ }; do
+            if [[ ! -d "$lang" ]]; then
+              echo "Did not find a database for $lang"
+              exit 1
+            fi
+            echo "Found database for $lang"
+          done
+    env:
+      LANGUAGES: cpp,csharp,go,java,javascript,python,ruby
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__local-bundle.yml

@@ -0,0 +1,98 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Local CodeQL bundle
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: local-bundle-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  local-bundle:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Local CodeQL bundle
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Fetch latest CodeQL bundle
+        run: |
+          wget https://github.com/github/codeql-action/releases/latest/download/codeql-bundle-linux64.tar.zst
+      - id: init
+        uses: ./../action/init
+        with:
+          # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
+          tools: ./codeql-bundle-linux64.tar.zst
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__multi-language-autodetect.yml

@@ -0,0 +1,197 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Multi-language repository
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: multi-language-autodetect-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  multi-language-autodetect:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: macos-15-xlarge
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: macos-15-xlarge
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.21.4
+          - os: macos-15-xlarge
+            version: stable-v2.21.4
+          - os: ubuntu-latest
+            version: stable-v2.22.4
+          - os: macos-15-xlarge
+            version: stable-v2.22.4
+          - os: ubuntu-latest
+            version: stable-v2.23.9
+          - os: macos-latest-xlarge
+            version: stable-v2.23.9
+          - os: ubuntu-latest
+            version: stable-v2.24.3
+          - os: macos-latest-xlarge
+            version: stable-v2.24.3
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest-xlarge
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest-xlarge
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest-xlarge
+            version: nightly-latest
+    name: Multi-language repository
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Python 3.13.15 for older CLI versions
+        # Older CLI versions don't work with Python 3.13.16 or newer because their Python extractor
+        # imports `importlib._bootstrap._ERR_MSG`, which those Python versions no longer define.
+        # See https://github.com/github/codeql-action/pull/3212
+        if: matrix.version != 'nightly-latest' && matrix.version != 'linked'
+        uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
+        with:
+          python-version: '3.13.15'
+
+      - name: Use Xcode 16
+        # Only the older CodeQL CLI versions need Xcode 16, and these run on macOS 15.
+        if: matrix.os == 'macos-15-xlarge'
+        run: sudo xcode-select -s "/Applications/Xcode_16.app"
+
+      - uses: ./../action/init
+        id: init
+        with:
+          db-location: '${{ runner.temp }}/customDbLocation'
+          languages: ${{ runner.os == 'Linux' && 'cpp,csharp,go,java,javascript,python,ruby' || '' }}
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Build code
+        run: ./build.sh
+
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+
+      - name: Check language autodetect for all languages excluding Swift
+        run: |
+          CPP_DB=${{ fromJson(steps.analysis.outputs.db-locations).cpp }}
+          if [[ ! -d $CPP_DB ]] || [[ ! $CPP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for CPP, or created it in the wrong location."
+            exit 1
+          fi
+          CSHARP_DB=${{ fromJson(steps.analysis.outputs.db-locations).csharp }}
+          if [[ ! -d $CSHARP_DB ]] || [[ ! $CSHARP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for C Sharp, or created it in the wrong location."
+            exit 1
+          fi
+          GO_DB=${{ fromJson(steps.analysis.outputs.db-locations).go }}
+          if [[ ! -d $GO_DB ]] || [[ ! $GO_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Go, or created it in the wrong location."
+            exit 1
+          fi
+          JAVA_DB=${{ fromJson(steps.analysis.outputs.db-locations).java }}
+          if [[ ! -d $JAVA_DB ]] || [[ ! $JAVA_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Java, or created it in the wrong location."
+            exit 1
+          fi
+          JAVASCRIPT_DB=${{ fromJson(steps.analysis.outputs.db-locations).javascript }}
+          if [[ ! -d $JAVASCRIPT_DB ]] || [[ ! $JAVASCRIPT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Javascript, or created it in the wrong location."
+            exit 1
+          fi
+          PYTHON_DB=${{ fromJson(steps.analysis.outputs.db-locations).python }}
+          if [[ ! -d $PYTHON_DB ]] || [[ ! $PYTHON_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Python, or created it in the wrong location."
+            exit 1
+          fi
+          RUBY_DB=${{ fromJson(steps.analysis.outputs.db-locations).ruby }}
+          if [[ ! -d $RUBY_DB ]] || [[ ! $RUBY_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Ruby, or created it in the wrong location."
+            exit 1
+          fi
+
+      - name: Check language autodetect for Swift on macOS
+        if: runner.os == 'macOS'
+        run: |
+          SWIFT_DB=${{ fromJson(steps.analysis.outputs.db-locations).swift }}
+          if [[ ! -d $SWIFT_DB ]] || [[ ! $SWIFT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Swift, or created it in the wrong location."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_CLEANUP_TOOLCACHE_BUNDLES: true
+      CODEQL_ACTION_RESOLVE_SUPPORTED_LANGUAGES_USING_CLI: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__overlay-init-fallback.yml

@@ -0,0 +1,76 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Overlay database init fallback
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: overlay-init-fallback-${{github.ref}}
+jobs:
+  overlay-init-fallback:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Overlay database init fallback
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: actions # Any language without overlay support will do
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+        env:
+          CODEQL_OVERLAY_DATABASE_MODE: overlay-base
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases/actions"
+          if ! grep -q 'overlayBaseDatabase: false' codeql-database.yml ; then
+            echo "This test needs to be updated to use a non-overlay language."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-codescanning-config-inputs-js.yml

@@ -0,0 +1,132 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Packaging: Config and input passed to the CLI'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: packaging-codescanning-config-inputs-js-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  packaging-codescanning-config-inputs-js:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'Packaging: Config and input passed to the CLI'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Install Node.js
+        uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
+        with:
+          node-version: 20.x
+          cache: npm
+      - name: Install newer npm
+        run: npm install -g npm@11.19.1
+      - name: Install dependencies
+        run: npm ci
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: '.github/codeql/codeql-config-packaging3.yml'
+          packs: +codeql-testing/codeql-pack1@1.0.0
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
+
+      - name: Assert Results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-config-inputs-js.yml

@@ -0,0 +1,132 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Packaging: Config and input'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: packaging-config-inputs-js-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  packaging-config-inputs-js:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'Packaging: Config and input'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Install Node.js
+        uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
+        with:
+          node-version: 20.x
+          cache: npm
+      - name: Install newer npm
+        run: npm install -g npm@11.19.1
+      - name: Install dependencies
+        run: npm ci
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: '.github/codeql/codeql-config-packaging3.yml'
+          packs: +codeql-testing/codeql-pack1@1.0.0
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
+
+      - name: Assert Results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-config-js.yml

@@ -0,0 +1,131 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Packaging: Config file'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: packaging-config-js-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  packaging-config-js:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'Packaging: Config file'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Install Node.js
+        uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
+        with:
+          node-version: 20.x
+          cache: npm
+      - name: Install newer npm
+        run: npm install -g npm@11.19.1
+      - name: Install dependencies
+        run: npm ci
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: '.github/codeql/codeql-config-packaging.yml'
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
+
+      - name: Assert Results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-inputs-js.yml

@@ -0,0 +1,131 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Packaging: Action input'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: packaging-inputs-js-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  packaging-inputs-js:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'Packaging: Action input'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Install Node.js
+        uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
+        with:
+          node-version: 20.x
+          cache: npm
+      - name: Install newer npm
+        run: npm install -g npm@11.19.1
+      - name: Install dependencies
+        run: npm ci
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: '.github/codeql/codeql-config-packaging2.yml'
+          languages: javascript
+          packs: codeql-testing/codeql-pack1@1.0.0, codeql-testing/codeql-pack2, codeql-testing/codeql-pack3:other-query.ql
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
+
+      - name: Assert Results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__per-language-bundle-validation.yml

@@ -0,0 +1,164 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Per-language bundles
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: per-language-bundle-validation-${{github.ref}}
+jobs:
+  per-language-bundle-validation:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - language: actions
+            os: ubuntu-latest
+            version: nightly-latest
+            expected-extractors: actions javascript
+          - language: cpp
+            os: ubuntu-latest
+            version: nightly-latest
+            build-mode: manual
+            build-command: gcc -o main main.c
+          - language: csharp
+            os: ubuntu-latest
+            version: nightly-latest
+            build-mode: none
+          - language: go
+            os: ubuntu-latest
+            version: nightly-latest
+            build-mode: autobuild
+          - language: java
+            os: ubuntu-latest
+            version: nightly-latest
+            build-mode: none
+          - language: javascript
+            os: ubuntu-latest
+            version: nightly-latest
+          - language: python
+            os: ubuntu-latest
+            version: nightly-latest
+          - language: ruby
+            os: ubuntu-latest
+            version: nightly-latest
+          - language: rust
+            os: ubuntu-latest
+            version: nightly-latest
+          - language: swift
+            os: macos-latest-xlarge
+            version: nightly-latest
+            build-mode: autobuild
+    name: Per-language bundles
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: ${{ matrix.language }}
+          build-mode: ${{ matrix['build-mode'] }}
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Check that the bundle contains only the expected extractors
+        env:
+          CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
+          LANGUAGE: ${{ matrix.language }}
+          EXPECTED_EXTRACTORS: ${{ matrix['expected-extractors'] || matrix.language }}
+        run: |
+          extractors="$("$CODEQL_PATH" resolve languages --format=json | jq -r 'keys[]')"
+          echo "Extractors in the bundle:"
+          echo "$extractors"
+          echo "Expected: $EXPECTED_EXTRACTORS"
+
+          for expected in $EXPECTED_EXTRACTORS; do
+            if ! echo "$extractors" | grep -qx "$expected"; then
+              echo "::error::The ${LANGUAGE} bundle does not contain the ${expected} extractor."
+              exit 1
+            fi
+          done
+
+          # If the bundle contained extractors beyond those the language needs, then it would not
+          # have been trimmed, and this job would be silently validating the combined bundle.
+          for other in actions cpp csharp go java javascript python ruby rust swift; do
+            if echo "$EXPECTED_EXTRACTORS" | grep -qw "$other"; then
+              continue
+            fi
+            if echo "$extractors" | grep -qx "$other"; then
+              echo "::error::The ${LANGUAGE} bundle also contains the ${other} extractor, so it is not trimmed."
+              exit 1
+            fi
+          done
+      - name: Check that the bundle was not added to the toolcache
+        env:
+          CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
+        run: |
+          # A bundle that is missing most of its extractors must never be left in the toolcache,
+          # where a later job analyzing a different language could pick it up. The runner image
+          # ships with its own CodeQL in the toolcache, so check where this bundle was extracted to
+          # rather than whether the toolcache contains CodeQL at all.
+          echo "CodeQL is at $CODEQL_PATH"
+          if [[ "$CODEQL_PATH" == "$RUNNER_TOOL_CACHE"/* ]]; then
+            echo "::error::The per-language bundle was added to the toolcache at $CODEQL_PATH."
+            exit 1
+          fi
+          if [[ "$CODEQL_PATH" != "$RUNNER_TEMP"/* ]]; then
+            echo "::error::Expected the per-language bundle to be extracted under $RUNNER_TEMP, but found it at $CODEQL_PATH."
+            exit 1
+          fi
+      - name: Build code
+        if: matrix['build-command']
+        run: ${{ matrix['build-command'] }}
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check that a database was created for the language
+        env:
+          DB_LOCATIONS: ${{ steps.analysis.outputs.db-locations }}
+          LANGUAGE: ${{ matrix.language }}
+        run: |
+          database="$(echo "$DB_LOCATIONS" | jq -r --arg lang "$LANGUAGE" '.[$lang] // empty')"
+          if [ -z "$database" ] || [ ! -d "$database" ]; then
+            echo "::error::No CodeQL database was created for ${LANGUAGE}."
+            echo "Databases: $DB_LOCATIONS"
+            exit 1
+          fi
+          echo "Created a ${LANGUAGE} database at ${database}."
+    env:
+      CODEQL_ACTION_PER_LANGUAGE_BUNDLES: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__remote-config.yml

@@ -0,0 +1,96 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Remote config file
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: remote-config-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  remote-config:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Remote config file
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: cpp,csharp,java,javascript,python
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{ github.sha }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__resolve-environment-action.yml

@@ -0,0 +1,85 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Resolve environment
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: resolve-environment-action-${{github.ref}}
+jobs:
+  resolve-environment-action:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Resolve environment
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: go,javascript-typescript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Resolve environment for Go
+        uses: ./../action/resolve-environment
+        id: resolve-environment-go
+        with:
+          language: go
+
+      - name: Fail if Go configuration missing
+        if: (!fromJSON(steps.resolve-environment-go.outputs.environment).configuration.go)
+        run: exit 1
+
+      - name: Resolve environment for JavaScript/TypeScript
+        uses: ./../action/resolve-environment
+        id: resolve-environment-js
+        with:
+          language: javascript-typescript
+
+      - name: Fail if JavaScript/TypeScript configuration present
+        if: fromJSON(steps.resolve-environment-js.outputs.environment).configuration.javascript
+        run: exit 1
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__rubocop-multi-language.yml

@@ -0,0 +1,74 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - RuboCop multi-language
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: rubocop-multi-language-${{github.ref}}
+jobs:
+  rubocop-multi-language:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: RuboCop multi-language
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Set up Ruby
+        uses: ruby/setup-ruby@14594264cd68ce8a2345dd349bc3d138a4ef85c8 # v1.327.0
+        with:
+          ruby-version: 2.6
+      - name: Install Code Scanning integration
+        run: bundle add code-scanning-rubocop --version 0.3.0 --skip-install
+      - name: Install dependencies
+        run: bundle install
+      - name: RuboCop run
+        run: |
+          bash -c "
+            bundle exec rubocop --require code_scanning --format CodeScanning::SarifFormatter -o rubocop.sarif
+            [[ $? -ne 2 ]]
+          "
+      - uses: ./../action/upload-sarif
+        with:
+          sarif_file: rubocop.sarif
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__ruby.yml

@@ -0,0 +1,82 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Ruby analysis
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: ruby-${{github.ref}}
+jobs:
+  ruby:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: Ruby analysis
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: ruby
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        run: |
+          RUBY_DB="${{ fromJson(steps.analysis.outputs.db-locations).ruby }}"
+          if [[ ! -d "$RUBY_DB" ]]; then
+            echo "Did not create a database for Ruby."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__rust.yml

@@ -0,0 +1,80 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Rust analysis
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: rust-${{github.ref}}
+jobs:
+  rust:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.22.1
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Rust analysis
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: rust
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        run: |
+          RUST_DB="${{ fromJson(steps.analysis.outputs.db-locations).rust }}"
+          if [[ ! -d "$RUST_DB" ]]; then
+            echo "Did not create a database for Rust."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__split-workflow.yml

@@ -0,0 +1,133 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Split workflow
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: split-workflow-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  split-workflow:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: Split workflow
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: '.github/codeql/codeql-config-packaging3.yml'
+          packs: +codeql-testing/codeql-pack1@1.0.0
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          skip-queries: true
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+
+      - name: Assert No Results
+        run: |
+          if [ "$(ls -A $RUNNER_TEMP/results)" ]; then
+            echo "Expected results directory to be empty after skipping query execution!"
+            exit 1
+          fi
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+      - name: Assert Results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__start-proxy.yml

@@ -0,0 +1,105 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Start proxy
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: start-proxy-${{github.ref}}
+jobs:
+  start-proxy:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: Start proxy
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Setup proxy for registries
+        id: proxy
+        uses: ./../action/start-proxy
+        with:
+          language: java
+          registry_secrets: |
+            [
+              {
+                "type": "maven_repository",
+                "url": "https://repo.maven.apache.org/maven2/"
+              },
+              {
+                "type": "maven_repository",
+                "url": "https://repo1.maven.org/maven2"
+              }
+            ]
+
+      - name: Print proxy outputs
+        run: |
+          echo "${{ steps.proxy.outputs.proxy_host }}"
+          echo "${{ steps.proxy.outputs.proxy_port }}"
+          echo "${{ steps.proxy.outputs.proxy_urls }}"
+
+      - name: Fail if proxy outputs are not set
+        if: (!steps.proxy.outputs.proxy_host) || (!steps.proxy.outputs.proxy_port) || (!steps.proxy.outputs.proxy_ca_certificate) || (!steps.proxy.outputs.proxy_urls)
+        run: exit 1
+
+      - name: Fail if proxy_urls does not contain all registries
+        if: |
+          join(fromJSON(steps.proxy.outputs.proxy_urls)[*].type, ',') != 'maven_repository,maven_repository'
+          || !contains(steps.proxy.outputs.proxy_urls, 'https://repo.maven.apache.org/maven2/')
+          || !contains(steps.proxy.outputs.proxy_urls, 'https://repo1.maven.org/maven2')
+        run: exit 1
+
+      - uses: ./../action/init
+        env:
+          CODEQL_PROXY_HOST: ${{ steps.proxy.outputs.proxy_host }}
+          CODEQL_PROXY_PORT: ${{ steps.proxy.outputs.proxy_port }}
+          CODEQL_PROXY_CA_CERTIFICATE: ${{ steps.proxy.outputs.proxy_ca_certificate }}
+        with:
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          config-file: codeql-action@main:tests/multi-language-repo/.github/codeql/custom-queries.yml
+    env:
+      CODEQL_ACTION_PROXY_API_REQUESTS: 'true'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__submit-sarif-failure.yml

@@ -0,0 +1,82 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Submit SARIF after failure
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: submit-sarif-failure-${{github.ref}}
+jobs:
+  submit-sarif-failure:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Submit SARIF after failure
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - uses: ./init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Fail
+        # We want this job to pass if the Action correctly uploads the SARIF file for
+        # the failed run.
+        # Setting this step to continue on error means that it is marked as completing
+        # successfully, so will not fail the job.
+        continue-on-error: true
+        run: exit 1
+      - uses: ./analyze
+        # In a real workflow, this step wouldn't run. Since we used `continue-on-error`
+        # above, we manually disable it with an `if` condition.
+        if: false
+        with:
+          category: '/test-codeql-version:${{ matrix.version }}'
+    env:
+      CODEQL_ACTION_EXPECT_UPLOAD_FAILED_SARIF: true
+      CODEQL_ACTION_UPLOAD_FAILED_SARIF: true
+      CODEQL_ACTION_TEST_MODE: false
+      CODEQL_ACTION_TESTING_ENVIRONMENT: codeql-action-pr-checks

.github/workflows/__swift-autobuild.yml

@@ -0,0 +1,78 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Swift analysis using autobuild
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: swift-autobuild-${{github.ref}}
+jobs:
+  swift-autobuild:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest-xlarge
+            version: nightly-latest
+    name: Swift analysis using autobuild
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: swift
+          build-mode: autobuild
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Check working directory
+        run: pwd
+      - uses: ./../action/autobuild
+        timeout-minutes: 30
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        run: |
+          SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
+          if [[ ! -d "$SWIFT_DB" ]]; then
+            echo "Did not create a database for Swift."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__swift-custom-build.yml

@@ -0,0 +1,111 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Swift analysis using a custom build command
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: swift-custom-build-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  swift-custom-build:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest-xlarge
+            version: linked
+          - os: macos-latest-xlarge
+            version: default
+          - os: macos-latest-xlarge
+            version: nightly-latest
+    name: Swift analysis using a custom build command
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: swift
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Check working directory
+        run: pwd
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        run: |
+          SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
+          if [[ ! -d "$SWIFT_DB" ]]; then
+            echo "Did not create a database for Swift."
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__unset-environment.yml

@@ -0,0 +1,138 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Test unsetting environment variables
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: unset-environment-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  unset-environment:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Test unsetting environment variables
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          db-location: ${{ runner.temp }}/customDbLocation
+          # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: env -i PATH="$PATH" HOME="$HOME" ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - run: |
+          CPP_DB="${{ fromJson(steps.analysis.outputs.db-locations).cpp }}"
+          if [[ ! -d "$CPP_DB" ]] || [[ ! "$CPP_DB" == "${RUNNER_TEMP}/customDbLocation/cpp" ]]; then
+            echo "::error::Did not create a database for CPP, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/cpp' but actual was '${CPP_DB}'"
+            exit 1
+          fi
+          CSHARP_DB="${{ fromJson(steps.analysis.outputs.db-locations).csharp }}"
+          if [[ ! -d "$CSHARP_DB" ]] || [[ ! "$CSHARP_DB" == "${RUNNER_TEMP}/customDbLocation/csharp" ]]; then
+            echo "::error::Did not create a database for C Sharp, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/csharp' but actual was '${CSHARP_DB}'"
+            exit 1
+          fi
+          GO_DB="${{ fromJson(steps.analysis.outputs.db-locations).go }}"
+          if [[ ! -d "$GO_DB" ]] || [[ ! "$GO_DB" == "${RUNNER_TEMP}/customDbLocation/go" ]]; then
+            echo "::error::Did not create a database for Go, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/go' but actual was '${GO_DB}'"
+            exit 1
+          fi
+          JAVA_DB="${{ fromJson(steps.analysis.outputs.db-locations).java }}"
+          if [[ ! -d "$JAVA_DB" ]] || [[ ! "$JAVA_DB" == "${RUNNER_TEMP}/customDbLocation/java" ]]; then
+            echo "::error::Did not create a database for Java, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/java' but actual was '${JAVA_DB}'"
+            exit 1
+          fi
+          JAVASCRIPT_DB="${{ fromJson(steps.analysis.outputs.db-locations).javascript }}"
+          if [[ ! -d "$JAVASCRIPT_DB" ]] || [[ ! "$JAVASCRIPT_DB" == "${RUNNER_TEMP}/customDbLocation/javascript" ]]; then
+            echo "::error::Did not create a database for Javascript, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/javascript' but actual was '${JAVASCRIPT_DB}'"
+            exit 1
+          fi
+          PYTHON_DB="${{ fromJson(steps.analysis.outputs.db-locations).python }}"
+          if [[ ! -d "$PYTHON_DB" ]] || [[ ! "$PYTHON_DB" == "${RUNNER_TEMP}/customDbLocation/python" ]]; then
+            echo "::error::Did not create a database for Python, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/python' but actual was '${PYTHON_DB}'"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__upload-ref-sha-input.yml

@@ -0,0 +1,103 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: "PR Check - Upload-sarif: 'ref' and 'sha' from inputs"
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: upload-ref-sha-input-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  upload-ref-sha-input:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: "Upload-sarif: 'ref' and 'sha' from inputs"
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: cpp,csharp,java,javascript,python
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{ github.sha }}
+      - name: Build code
+        run: ./build.sh
+      # Generate some SARIF we can upload with the upload-sarif step
+      - uses: ./../action/analyze
+        with:
+          ref: 'refs/heads/main'
+          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+          upload: never
+      - uses: ./../action/upload-sarif
+        with:
+          ref: 'refs/heads/main'
+          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__upload-sarif.yml

@@ -0,0 +1,168 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Test different uses of `upload-sarif`
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: upload-sarif-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  upload-sarif:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+            analysis-kinds: code-scanning
+          - os: ubuntu-latest
+            version: default
+            analysis-kinds: code-quality
+          - os: ubuntu-latest
+            version: default
+            analysis-kinds: code-scanning,code-quality
+    name: Test different uses of `upload-sarif`
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: csharp,java,javascript,python
+          analysis-kinds: ${{ matrix.analysis-kinds }}
+      - name: Build code
+        run: ./build.sh
+      # Generate some SARIF we can upload with the upload-sarif step
+      - uses: ./../action/analyze
+        with:
+          ref: 'refs/heads/main'
+          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+          upload: never
+          output: ${{ runner.temp }}/results
+
+      - name: |
+          Upload all SARIF files for `analysis-kinds: ${{ matrix.analysis-kinds }}`
+        uses: ./../action/upload-sarif
+        id: upload-sarif
+        with:
+          ref: 'refs/heads/main'
+          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+          sarif_file: ${{ runner.temp }}/results
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:all-files/
+      - name: 'Fail for missing output from `upload-sarif` step for `code-scanning`'
+        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-scanning)
+        run: exit 1
+      - name: 'Fail for missing output from `upload-sarif` step for `code-quality`'
+        if: contains(matrix.analysis-kinds, 'code-quality') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-quality)
+        run: exit 1
+
+      - name: Upload single SARIF file for Code Scanning
+        uses: ./../action/upload-sarif
+        id: upload-single-sarif-code-scanning
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        with:
+          ref: 'refs/heads/main'
+          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+          sarif_file: ${{ runner.temp }}/results/javascript.sarif
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-scanning/
+      - name: 'Fail for missing output from `upload-single-sarif-code-scanning` step'
+        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-single-sarif-code-scanning.outputs.sarif-ids).code-scanning)
+        run: exit 1
+      - name: Upload single SARIF file for Code Quality
+        uses: ./../action/upload-sarif
+        id: upload-single-sarif-code-quality
+        if: contains(matrix.analysis-kinds, 'code-quality')
+        with:
+          ref: 'refs/heads/main'
+          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+          sarif_file: ${{ runner.temp }}/results/javascript.quality.sarif
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-quality/
+      - name: 'Fail for missing output from `upload-single-sarif-code-quality` step'
+        if: contains(matrix.analysis-kinds, 'code-quality') && !(fromJSON(steps.upload-single-sarif-code-quality.outputs.sarif-ids).code-quality)
+        run: exit 1
+
+      - name: Change SARIF file extension
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        run: mv ${{ runner.temp }}/results/javascript.sarif ${{ runner.temp }}/results/javascript.sarif.json
+      - name: Upload single non-`.sarif` file
+        uses: ./../action/upload-sarif
+        id: upload-single-non-sarif
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        with:
+          ref: 'refs/heads/main'
+          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+          sarif_file: ${{ runner.temp }}/results/javascript.sarif.json
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:non-sarif/
+      - name: 'Fail for missing output from `upload-single-non-sarif` step'
+        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-single-non-sarif.outputs.sarif-ids).code-scanning)
+        run: exit 1
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__with-checkout-path.yml

@@ -0,0 +1,146 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Use a custom `checkout_path`
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: with-checkout-path-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  with-checkout-path:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Use a custom `checkout_path`
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      # This ensures we don't accidentally use the original checkout for any part of the test.
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Delete original checkout
+        run: |
+          # delete the original checkout so we don't accidentally use it.
+          # Actions does not support deleting the current working directory, so we
+          # delete the contents of the directory instead.
+          rm -rf ./* .github .git
+      # Check out the actions repo again, but at a different location.
+      # choose an arbitrary SHA so that we can later test that the commit_oid is not from main
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+        with:
+          ref: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
+          path: x/y/z/some-path
+
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          # it's enough to test one compiled language and one interpreted language
+          languages: csharp,javascript
+          source-root: x/y/z/some-path/tests/multi-language-repo
+
+      - name: Build code
+        working-directory: x/y/z/some-path/tests/multi-language-repo
+        run: |
+          ./build.sh
+
+      - uses: ./../action/analyze
+        with:
+          checkout_path: x/y/z/some-path/tests/multi-language-repo
+          ref: v1.1.0
+          sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
+
+      - name: Verify SARIF after upload
+        run: |
+          PAYLOAD_FILE="$RUNNER_TEMP/payload-code-scanning.json"
+          EXPECTED_COMMIT_OID="474bbf07f9247ffe1856c6a0f94aeeb10e7afee6"
+          EXPECTED_REF="v1.1.0"
+          EXPECTED_CHECKOUT_URI_SUFFIX="/x/y/z/some-path/tests/multi-language-repo"
+
+          ACTUAL_COMMIT_OID="$(cat "$PAYLOAD_FILE" | jq -r .commit_oid)"
+          ACTUAL_REF="$(cat "$PAYLOAD_FILE" | jq -r .ref)"
+          ACTUAL_CHECKOUT_URI="$(cat "$PAYLOAD_FILE" | jq -r .checkout_uri)"
+
+          if [[ "$EXPECTED_COMMIT_OID" != "$ACTUAL_COMMIT_OID" ]]; then
+            echo "::error Invalid commit oid. Expected: $EXPECTED_COMMIT_OID Actual: $ACTUAL_COMMIT_OID"
+            echo "$PAYLOAD_FILE"
+            exit 1
+          fi
+
+          if [[ "$EXPECTED_REF" != "$ACTUAL_REF" ]]; then
+            echo "::error Invalid ref. Expected: '$EXPECTED_REF' Actual: '$ACTUAL_REF'"
+            echo "$PAYLOAD_FILE"
+            exit 1
+          fi
+
+          if [[ "$ACTUAL_CHECKOUT_URI" != *$EXPECTED_CHECKOUT_URI_SUFFIX ]]; then
+            echo "::error Invalid checkout URI suffix. Expected suffix: $EXPECTED_CHECKOUT_URI_SUFFIX Actual uri: $ACTUAL_CHECKOUT_URI"
+            echo "$PAYLOAD_FILE"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/pr-checks.yml

@@ -1,11 +1,14 @@
 name: PR Checks
 
 on:
+  push:
+  pull_request:
+  merge_group:
+    types: [checks_requested]
   workflow_dispatch:
-  workflow_call:
 
 concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || github.event_name == 'workflow_call' }}
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
   group: ${{ github.workflow }}-${{ github.ref }}
 
 defaults:

CHANGELOG.md

@@ -4,8 +4,13 @@ See the [releases page](https://github.com/github/codeql-action/releases) for th
 
 ## [UNRELEASED]
 
+No user facing changes.
+
+## 4.38.3 - 08 Oct 2026
+
 - _Upcoming breaking change_: CodeQL version 2.21.2 and earlier were discontinued on 24 September 2026 alongside GitHub Enterprise Server 3.17, and will be unsupported by the next minor release of the CodeQL Action. Added a deprecation warning for customers using these versions of CodeQL. [#4188](https://github.com/github/codeql-action/pull/4188)
 - Update default CodeQL bundle version to [2.27.2](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.27.2). [#4203](https://github.com/github/codeql-action/pull/4203)
+- Fixed a bug where the decision of whether to use a per-language bundle did not account for custom configurations that reference queries outside of compiled CodeQL packs. This issue was caught during internal testing and did not affect any customer repositories. We will resume the roll out of per-language bundles in the coming weeks. [#4184](https://github.com/github/codeql-action/pull/4184)
 
 ## 4.38.2 - 24 Sept 2026
 

ava.setup.mjs

@@ -1,3 +1,4 @@
 import pkg from "./package.json" with { type: "json" };
 
 globalThis.__CODEQL_ACTION_VERSION__ = pkg.version;
+globalThis.__CODEQL_ACTION_TEST_ENV__ = "unit-test";

build.mjs

@@ -78,7 +78,7 @@ const UPLOAD_LIB_SRC = "./src/upload-lib";
  *
  * The virtual module additionally re-exports `upload-lib` under the `uploadLib` namespace so that
  * external consumers can access it via the small `lib/upload-lib.js` stub emitted below.
- * 
+ *
  * A tiny stub file is emitted for each Action entrypoint, and one for `upload-lib`. Each stub
  * imports the shared bundle and calls/re-exports from the respective entry point.
  *
@@ -212,6 +212,7 @@ const context = await esbuild.context({
   target: ["node20"],
   define: {
     __CODEQL_ACTION_VERSION__: JSON.stringify(pkg.version),
+    __CODEQL_ACTION_TEST_ENV__: JSON.stringify(""),
   },
   metafile: true,
 });

eslint.config.mjs

@@ -140,6 +140,17 @@ export default [
       "no-async-foreach/no-async-foreach": "error",
       "no-sequences": "error",
       "no-shadow": "off",
+
+      // A basic check that we don't use `exportVariable` from `@actions/core`.
+      "no-restricted-syntax": [
+        "error",
+        {
+          selector: "MemberExpression[property.name='exportVariable']",
+          message:
+            "Use the `export` method of an `Env` instance or `exportEnvVar` from `environment.ts` instead.",
+        },
+      ],
+
       // This is overly restrictive with unsetting `EnvVar`s
       "@typescript-eslint/no-dynamic-delete": "off",
       "@typescript-eslint/no-shadow": "error",
@@ -157,6 +168,15 @@ export default [
       ],
     },
   },
+  {
+    files: ["src/environment.ts"],
+
+    // We allow `exportVariable` from `@actions/core` to be used in this file
+    // since it defines the wrapper around it that other modules use.
+    rules: {
+      "no-restricted-syntax": "off",
+    },
+  },
   {
     files: ["**/*.ts", "**/*.js"],
 

package-lock.json

@@ -1,12 +1,12 @@
 {
   "name": "codeql",
-  "version": "4.38.3",
+  "version": "4.38.4",
   "lockfileVersion": 3,
   "requires": true,
   "packages": {
     "": {
       "name": "codeql",
-      "version": "4.38.3",
+      "version": "4.38.4",
       "license": "MIT",
       "workspaces": [
         "pr-checks"
@@ -58,7 +58,7 @@
         "eslint-import-resolver-typescript": "^4.4.5",
         "eslint-plugin-github": "^6.1.2",
         "eslint-plugin-import-x": "^4.17.1",
-        "eslint-plugin-jsdoc": "^64.5.4",
+        "eslint-plugin-jsdoc": "^65.0.1",
         "eslint-plugin-no-async-foreach": "^0.1.1",
         "glob": "^13.0.6",
         "globals": "^17.12.0",
@@ -5381,15 +5381,15 @@
       }
     },
     "node_modules/eslint-plugin-jsdoc": {
-      "version": "64.5.4",
-      "resolved": "https://registry.npmjs.org/eslint-plugin-jsdoc/-/eslint-plugin-jsdoc-64.5.4.tgz",
-      "integrity": "sha512-xfRhXPSSWT612muJ6XTvxuVJ8zYHv99qNgBqPVqF28aSqoy4s4XbSkrWXnYA2hl5ejC02yEpk6fqkj3BmJ6Xbg==",
+      "version": "65.0.1",
+      "resolved": "https://registry.npmjs.org/eslint-plugin-jsdoc/-/eslint-plugin-jsdoc-65.0.1.tgz",
+      "integrity": "sha512-7IvB+ZS71WCw5tGKh6f6D5k55qtXKdrGTnIpQTBKWdpyZ5IfhGHfh0i6ArWlCJ4JEtz22YRk5Bqu1MvbOlpMKQ==",
       "dev": true,
       "license": "BSD-3-Clause",
       "dependencies": {
         "@es-joy/jsdoccomment": "~0.98.0",
         "@es-joy/resolve.exports": "1.2.0",
-        "@typescript-eslint/utils": "^8.70.0",
+        "@typescript-eslint/utils": "^8.70.1",
         "are-docs-informative": "^0.1.1",
         "comment-parser": "1.4.9",
         "debug": "^4.4.3",

package.json

@@ -1,6 +1,6 @@
 {
   "name": "codeql",
-  "version": "4.38.3",
+  "version": "4.38.4",
   "private": true,
   "description": "CodeQL action",
   "scripts": {
@@ -66,7 +66,7 @@
     "eslint-import-resolver-typescript": "^4.4.5",
     "eslint-plugin-github": "^6.1.2",
     "eslint-plugin-import-x": "^4.17.1",
-    "eslint-plugin-jsdoc": "^64.5.4",
+    "eslint-plugin-jsdoc": "^65.0.1",
     "eslint-plugin-no-async-foreach": "^0.1.1",
     "glob": "^13.0.6",
     "globals": "^17.12.0",

pr-checks/changelog/validate.test.ts

@@ -154,26 +154,6 @@ await describe("isValidChangenoteFile", async () => {
     assert.equal(isValidChangenoteFile("non-existent-file.md"), false);
   });
 
-  await it("rejects invalid filename", async () => {
-    await withTmpFile(
-      "fix-bug.md",
-      "---\ncategory: fix\n---\n- Fixed a bug\n",
-      (filePath) => {
-        assert.equal(isValidChangenoteFile(filePath), false);
-      },
-    );
-  });
-
-  await it("rejects missing frontmatter", async () => {
-    await withTmpFile(
-      "2026-01-01-fix-bug.md",
-      "- Fixed a bug\n",
-      (filePath) => {
-        assert.equal(isValidChangenoteFile(filePath), false);
-      },
-    );
-  });
-
   await it("rejects invalid Markdown", async () => {
     await withTmpFile(
       "2026-01-01-fix-bug.md",

pr-checks/changelog/validate.ts

@@ -1,5 +1,4 @@
 import * as fs from "node:fs";
-import * as path from "node:path";
 
 import { matter } from "lite-matter";
 import type { List, ListItem } from "mdast";
@@ -95,21 +94,7 @@ export function isValidChangenoteFile(filename: string): boolean {
     return false;
   }
 
-  const { data: frontmatter, content } = matter(fileData);
-
-  if (!isValidChangenoteFilename(path.basename(filename))) {
-    isValid = false;
-    console.error(
-      `${filename}: invalid filename; must match pattern YYYY-MM-DD-id.md`,
-    );
-  }
-  if (!hasValidChangenoteCategory(frontmatter)) {
-    isValid = false;
-    const categories = Object.keys(VALID_CHANGE_NOTE_CATEGORIES).join(", ");
-    console.error(
-      `${filename}: invalid category; must be one of: ${categories}`,
-    );
-  }
+  const { content } = matter(fileData);
   if (!isValidChangenoteContent(content)) {
     isValid = false;
     console.error(

pr-checks/checks/multi-language-autodetect.yml

@@ -20,13 +20,14 @@ env:
 installGo: true
 installDotNet: true
 steps:
-  - name: Install Python 3.13 for older CLI versions
-    # We need Python 3.13 for older CLI versions because they are not compatible with Python 3.14 or newer.
+  - name: Install Python 3.13.15 for older CLI versions
+    # Older CLI versions don't work with Python 3.13.16 or newer because their Python extractor
+    # imports `importlib._bootstrap._ERR_MSG`, which those Python versions no longer define.
     # See https://github.com/github/codeql-action/pull/3212
     if: matrix.version != 'nightly-latest' && matrix.version != 'linked'
     uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
     with:
-      python-version: "3.13"
+      python-version: "3.13.15"
 
   - name: Use Xcode 16
     # Only the older CodeQL CLI versions need Xcode 16, and these run on macOS 15.

pr-checks/sync.ts

@@ -571,7 +571,6 @@ function generateJob(
   specSteps.items.unshift(...steps);
 
   const checkJob: Record<string, any> = {
-    needs: ["pr-checks"],
     strategy: {
       "fail-fast": false,
       matrix: checkSpecification.matrix ?? {
@@ -699,35 +698,6 @@ function generateValidationJobs(
   };
 }
 
-/**
- * Constructs the body of a job that calls another workflow.
- *
- * @param jobName The friendly name of the job.
- * @param workflowBaseName The base name of the workflow file to call.
- * @param options Optional settings and overrides for the workflow call.
- * @param options.inputs Optionally, the inputs for the workflow.
- * @param options.permissions Permission overrides for the call.
- */
-function workflowCall(
-  jobName: string,
-  workflowBaseName: string,
-  options?: {
-    inputs?: Record<string, string>;
-    permissions?: Record<string, "read" | "write">;
-  },
-) {
-  return {
-    name: jobName,
-    permissions: {
-      contents: "read",
-      "security-events": "read",
-      ...options?.permissions,
-    },
-    uses: `./.github/workflows/${workflowBaseName}.yml`,
-    with: options?.inputs,
-  };
-}
-
 /**
  * Main entry point for the sync script.
  */
@@ -744,47 +714,6 @@ function main(): void {
 
   console.log(`Found ${checkFiles.length} check specification(s).`);
 
-  let allInputs: Record<string, WorkflowInput> = {};
-
-  const initialChecksJob = workflowCall("Initial checks", "pr-checks", {
-    permissions: { "security-events": "write", "pull-requests": "write" },
-  });
-
-  const cron = new yaml.Scalar("0 5 * * *");
-  cron.type = yaml.Scalar.QUOTE_SINGLE;
-
-  const checkWorkflow = {
-    name: `PR Checks`,
-    env: {
-      GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}",
-      GO111MODULE: "auto",
-    },
-    on: {
-      push: {
-        branches: ["main", "releases/v*"],
-      },
-      pull_request: {},
-      merge_group: {
-        types: ["checks_requested"],
-      },
-      schedule: [{ cron }],
-      workflow_dispatch: {
-        inputs: {},
-      },
-      workflow_call: {
-        inputs: {},
-      },
-    },
-    defaults: {
-      run: {
-        shell: "bash",
-      },
-    },
-    jobs: {
-      "pr-checks": initialChecksJob,
-    },
-  };
-
   const collections: Record<
     string,
     Array<{
@@ -824,31 +753,56 @@ function main(): void {
       });
     }
 
-    allInputs = { ...allInputs, ...combinedInputs };
-
-    checkWorkflow.jobs[checkName] = checkJob;
-
-    for (const [name, job] of Object.entries(validationJobs)) {
-      checkWorkflow.jobs[name] = job;
+    let extraGroupName = "";
+    for (const inputName of Object.keys(combinedInputs)) {
+      extraGroupName += `-\${{inputs.${inputName}}}`;
     }
+
+    const cron = new yaml.Scalar("0 5 * * *");
+    cron.type = yaml.Scalar.QUOTE_SINGLE;
+
+    const workflow = {
+      name: `PR Check - ${checkSpecification.name}`,
+      env: {
+        GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}",
+        GO111MODULE: "auto",
+      },
+      on: {
+        push: {
+          branches: ["main", "releases/v*"],
+        },
+        pull_request: {},
+        merge_group: {
+          types: ["checks_requested"],
+        },
+        schedule: [{ cron }],
+        workflow_dispatch: {
+          inputs: combinedInputs,
+        },
+        workflow_call: {
+          inputs: combinedInputs,
+        },
+      },
+      defaults: {
+        run: {
+          shell: "bash",
+        },
+      },
+      concurrency: {
+        "cancel-in-progress":
+          "${{ github.event_name == 'pull_request' || false }}",
+        group: `${checkName}-\${{github.ref}}${extraGroupName}`,
+      },
+      jobs: {
+        [checkName]: checkJob,
+        ...validationJobs,
+      },
+    };
+
+    const outputPath = path.join(OUTPUT_DIR, `__${checkName}.yml`);
+    writeYaml(outputPath, workflow);
   }
 
-  let extraGroupName = "";
-  for (const inputName of Object.keys(allInputs)) {
-    extraGroupName += `-\${{inputs.${inputName}}}`;
-  }
-
-  checkWorkflow["concurrency"] = {
-    "cancel-in-progress": "${{ github.event_name == 'pull_request' || false }}",
-    group: `pr-\${{github.ref}}${extraGroupName}`,
-  };
-
-  checkWorkflow.on.workflow_call.inputs = allInputs;
-  checkWorkflow.on.workflow_dispatch.inputs = allInputs;
-
-  const mainOutputPath = path.join(OUTPUT_DIR, `__pr.yml`);
-  writeYaml(mainOutputPath, checkWorkflow);
-
   // Write workflow files for collections.
   for (const collectionName of Object.keys(collections)) {
     const jobs: Record<string, any> = {};
@@ -864,9 +818,15 @@ function main(): void {
         checkWith[inputName] = `\${{ inputs.${inputName} }}`;
       }
 
-      jobs[checkName] = workflowCall(specification.name, `__${checkName}`, {
-        inputs: checkWith,
-      });
+      jobs[checkName] = {
+        name: specification.name,
+        permissions: {
+          contents: "read",
+          "security-events": "read",
+        },
+        uses: `./.github/workflows/__${checkName}.yml`,
+        with: checkWith,
+      };
     }
 
     const collectionWorkflow = {
@@ -888,10 +848,8 @@ function main(): void {
   }
 
   console.log(
-    `\nDone. Generated ${checkFiles.length} check(s) to ${OUTPUT_DIR}`,
+    `\nDone. Wrote ${checkFiles.length} workflow file(s) to ${OUTPUT_DIR}`,
   );
 }
 
-if (import.meta.main) {
-  main();
-}
+main();

queries/default-setup-environment-variables.ql

@@ -23,7 +23,8 @@ predicate isSafeForDefaultSetup(string envVar) {
       "GITHUB_BASE_REF", "GITHUB_EVENT_NAME", "GITHUB_JOB", "GITHUB_RUN_ATTEMPT", "GITHUB_RUN_ID",
       "GITHUB_SHA", "GITHUB_REPOSITORY", "GITHUB_SERVER_URL", "GITHUB_TOKEN", "GITHUB_WORKFLOW",
       "GITHUB_WORKSPACE", "GOFLAGS", "ImageVersion", "JAVA_TOOL_OPTIONS", "RUNNER_ARCH",
-      "RUNNER_ENVIRONMENT", "RUNNER_NAME", "RUNNER_OS", "RUNNER_TEMP", "RUNNER_TOOL_CACHE"
+      "RUNNER_ENVIRONMENT", "RUNNER_NAME", "RUNNER_OS", "RUNNER_TEMP", "RUNNER_TOOL_CACHE",
+      "NODE_ENV"
     ]
 }
 

src/action-common.ts

@@ -56,6 +56,29 @@ export interface FeatureState {
 /** Identifies a type of state an Action may have. */
 export type StateFeature = keyof FeatureState;
 
+/**
+ * The `Env` feature implies the availability of the `ReadOnlyEnv` feature.
+ *
+ * If `T` is `Env`, this returns `Env | ReadOnlyEnv`.
+ * Otherwise, it is the identity and returns T.
+ */
+type ImpliedFeatures<T extends StateFeature> = T extends "Env"
+  ? "Env" | "ReadOnlyEnv"
+  : T;
+
+/**
+ * Given an object type `Obj`, this tries to lookup a corresponding `StateFeature`
+ * to which the object type belongs in `FeatureState`. Resolves to `never` if there
+ * is no match.
+ */
+type FeatureNameFor<Obj extends object> = {
+  [K in StateFeature]: [Obj] extends [FeatureState[K]]
+    ? [FeatureState[K]] extends [Obj]
+      ? K
+      : never
+    : never;
+}[StateFeature];
+
 /** Constructs the intersection of all state types identifies by `Fs`. */
 export type FieldsOf<Fs extends readonly StateFeature[]> = Fs extends []
   ? Record<never, never>
@@ -66,8 +89,54 @@ export type FieldsOf<Fs extends readonly StateFeature[]> = Fs extends []
     ? FeatureState[Head] & FieldsOf<Tail>
     : never;
 
+/**
+ * Symbol used for a field in `ActionState` that carries the type array of state features.
+ * This is a Symbol so that it doesn't clash with any property names we might want to have.
+ */
+const stateFeatures = Symbol();
+
 /** Describes the state of an Action that has access to the state corresponding to `Fs`. */
-export type ActionState<Fs extends readonly StateFeature[]> = FieldsOf<Fs>;
+export type ActionState<Fs extends readonly StateFeature[]> = FieldsOf<Fs> & {
+  /**
+   * When given a chance, TypeScript will simplify an `ActionState<Fs>` type as much as possible,
+   * which results in a concrete object type that doesn't mention `Fs`.
+   *
+   * That causes problems for functions which accept `ActionState<Fs>` values, but need to know the
+   * feature keys `Fs`. This property here explicitly captures `Fs` in the concrete object type
+   * that results from simplifying `ActionState<Fs>`.
+   *
+   * This is a function rather than a field, because we want to be able to provide values of type
+   * `ActionState<Fs>` to functions expecting `ActionState<As>` where `As` is a subset of `Fs`.
+   *
+   * Since function types are contravariant in the types of their parameters, using a function
+   * type here allows that to happen.
+   *
+   * Because the field is optional, we don't have to explicitly provide a value
+   * for it anywhere while the type is still inferred.
+   *
+   * `Fs[number]` returns the union of all features in `Fs`. We wrap it in `ImpliedFeatures`
+   * so that `Env` is expanded into `Env | ReadOnlyEnv`, allowing functions that expect the
+   * `ReadOnlyEnv` feature to be provided with an `ActionState` that has the `Env` feature
+   * without requiring this to be made explicit.
+   */
+  readonly [stateFeatures]?: (ts: ImpliedFeatures<Fs[number]>) => void;
+};
+
+/** Extends `state` with an `extra` feature. */
+export function extendActionState<
+  // In first position, so that it can be explicitly provided if `FeatureNameFor`
+  // should not work on `extra`.
+  F extends StateFeature,
+  Fs extends readonly StateFeature[],
+  E extends FeatureState[F],
+>(
+  state: ActionState<Fs>,
+  extra: E,
+): ActionState<[...Fs, FeatureNameFor<E> & F]> {
+  return { ...state, ...extra } as unknown as ActionState<
+    [...Fs, FeatureNameFor<E> & F]
+  >;
+}
 
 /** The type of an Action's main entry point. This is a function that is provided
  * with a basic `ActionState` object with features that are always available.

src/actions-util.ts

@@ -30,7 +30,6 @@ declare const __CODEQL_ACTION_VERSION__: string;
 export interface ActionsEnv {
   getRequiredInput: (name: string) => string;
   getOptionalInput: (name: string) => string | undefined;
-  exportVariable: (name: string, value: string) => void;
 }
 
 /**
@@ -40,7 +39,6 @@ export function getActionsEnv(): ActionsEnv {
   return {
     getRequiredInput,
     getOptionalInput,
-    exportVariable: core.exportVariable,
   };
 }
 

src/analyze-action.ts

@@ -214,9 +214,10 @@ async function runAutobuildIfLegacyGoWorkflow(config: Config, logger: Logger) {
 
 async function run({
   startedAt,
+  env,
   logger,
   actions,
-}: ActionState<["Base", "Logger", "Actions"]>) {
+}: ActionState<["Base", "Env", "Logger", "Actions"]>) {
   // To capture errors appropriately, keep as much code within the try-catch as
   // possible, and only use safe functions outside.
 
@@ -287,7 +288,7 @@ async function run({
 
     const apiDetails = getApiDetails();
     const outputDir = actionsUtil.getRequiredInput("output");
-    core.exportVariable(EnvVar.SARIF_RESULTS_OUTPUT_DIR, outputDir);
+    env.export(EnvVar.SARIF_RESULTS_OUTPUT_DIR, outputDir);
     const threads = util.getThreadsFlag(
       actionsUtil.getOptionalInput("threads") || process.env["CODEQL_THREADS"],
       logger,
@@ -456,7 +457,7 @@ async function run({
         `expect-error input was set to true but no error was thrown.`,
       );
     }
-    core.exportVariable(EnvVar.ANALYZE_DID_COMPLETE_SUCCESSFULLY, "true");
+    env.export(EnvVar.ANALYZE_DID_COMPLETE_SUCCESSFULLY, "true");
   } catch (unwrappedError) {
     const error = util.wrapError(unwrappedError);
     if (

src/api-client.ts

@@ -17,6 +17,7 @@ import {
   ReadOnlyEnv,
   RegistryProxyVars,
   getEnv,
+  exportEnvVar,
 } from "./environment";
 import { Logger } from "./logging";
 import { getRepositoryNwo, RepositoryNwo } from "./repository";
@@ -316,7 +317,7 @@ export async function getAnalysisKey(): Promise<string> {
   const jobName = getRequiredEnvParam("GITHUB_JOB");
 
   analysisKey = `${workflowPath}:${jobName}`;
-  core.exportVariable(EnvVar.ANALYSIS_KEY, analysisKey);
+  exportEnvVar(EnvVar.ANALYSIS_KEY, analysisKey);
   return analysisKey;
 }
 

src/autobuild-action.ts

@@ -68,7 +68,11 @@ async function sendCompletedStatusReport(
   }
 }
 
-async function run({ startedAt, logger }: ActionState<["Base", "Logger"]>) {
+async function run({
+  startedAt,
+  env,
+  logger,
+}: ActionState<["Base", "Env", "Logger"]>) {
   // To capture errors appropriately, keep as much code within the try-catch as
   // possible, and only use safe functions outside.
 
@@ -135,7 +139,7 @@ async function run({ startedAt, logger }: ActionState<["Base", "Logger"]>) {
     return;
   }
 
-  core.exportVariable(EnvVar.AUTOBUILD_DID_COMPLETE_SUCCESSFULLY, "true");
+  env.export(EnvVar.AUTOBUILD_DID_COMPLETE_SUCCESSFULLY, "true");
 
   await sendCompletedStatusReport(config, logger, startedAt, languages ?? []);
 }

src/autobuild.ts

@@ -1,11 +1,9 @@
-import * as core from "@actions/core";
-
 import { getTemporaryDirectory, getWorkflowEventName } from "./actions-util";
 import { getGitHubVersion } from "./api-client";
 import { CodeQL, getCodeQL } from "./codeql";
 import * as configUtils from "./config-utils";
 import { DocUrl } from "./doc-url";
-import { ActionsEnvVars, EnvVar } from "./environment";
+import { ActionsEnvVars, EnvVar, exportEnvVar } from "./environment";
 import { Feature, featureConfig, initFeatures } from "./feature-flags";
 import { BuiltInLanguage, Language } from "./languages";
 import { Logger } from "./logging";
@@ -136,16 +134,16 @@ export async function setupCppAutobuild(codeql: CodeQL, logger: Logger) {
             : ""
         }`,
       );
-      core.exportVariable(envVar, "false");
+      exportEnvVar(envVar, "false");
     } else {
       logger.info(
         `Enabling ${featureName}. This can be disabled by setting the ${envVar} environment variable to 'false'. See ${DocUrl.DEFINE_ENV_VARIABLES} for more information.`,
       );
-      core.exportVariable(envVar, "true");
+      exportEnvVar(envVar, "true");
     }
   } else {
     logger.info(`Disabling ${featureName}.`);
-    core.exportVariable(envVar, "false");
+    exportEnvVar(envVar, "false");
   }
 }
 
@@ -165,7 +163,7 @@ export async function runAutobuild(
     await codeQL.runAutobuild(config, language);
   }
   if (language === BuiltInLanguage.go) {
-    core.exportVariable(EnvVar.DID_AUTOBUILD_GOLANG, "true");
+    exportEnvVar(EnvVar.DID_AUTOBUILD_GOLANG, "true");
   }
   logger.endGroup();
 }

src/codeql.ts

@@ -17,7 +17,7 @@ import type { VersionInfo } from "./cli/types";
 import { CliError, wrapCliConfigurationError } from "./cli-errors";
 import { appendExtraQueryExclusions, type Config } from "./config-utils";
 import { DocUrl } from "./doc-url";
-import { EnvVar, getEnv } from "./environment";
+import { EnvVar, getEnv, exportEnvVar } from "./environment";
 import {
   CodeQLDefaultVersionInfo,
   Feature,
@@ -1054,7 +1054,7 @@ async function getCodeQLForCmd(
         }' by 'github/codeql-action/*@v${getActionVersion()}' in your code scanning workflow to ` +
         "continue using this version of the CodeQL Action.",
     );
-    core.exportVariable(EnvVar.SUPPRESS_DEPRECATED_SOON_WARNING, "true");
+    exportEnvVar(EnvVar.SUPPRESS_DEPRECATED_SOON_WARNING, "true");
   }
   return codeql;
 }

src/config-utils.ts

@@ -2,7 +2,6 @@ import * as fs from "fs";
 import * as path from "path";
 import { performance } from "perf_hooks";
 
-import * as core from "@actions/core";
 import * as yaml from "js-yaml";
 
 import { ActionState } from "./action-common";
@@ -46,7 +45,7 @@ import {
   makeTelemetryDiagnostic,
 } from "./diagnostics";
 import { prepareDiffInformedAnalysis } from "./diff-informed-analysis-utils";
-import { EnvVar } from "./environment";
+import { EnvVar, exportEnvVar } from "./environment";
 import * as errorMessages from "./error-messages";
 import { Feature, FeatureEnablement, FeatureWithoutCLI } from "./feature-flags";
 import {
@@ -965,10 +964,10 @@ async function setCppTrapCachingEnvironmentVariables(
       );
     } else if (config.trapCaches[BuiltInLanguage.cpp]) {
       logger.info("Enabling TRAP caching for C/C++.");
-      core.exportVariable(envVar, "true");
+      exportEnvVar(envVar, "true");
     } else {
       logger.debug(`Disabling TRAP caching for C/C++.`);
-      core.exportVariable(envVar, "false");
+      exportEnvVar(envVar, "false");
     }
   }
 }

src/debug-artifacts.ts

@@ -11,7 +11,7 @@ import { dbIsFinalized } from "./analyze";
 import { scanArtifactsForTokens } from "./artifact-scanner";
 import { type CodeQL } from "./codeql";
 import { Config } from "./config-utils";
-import { EnvVar } from "./environment";
+import { EnvVar, exportEnvVar } from "./environment";
 import * as json from "./json";
 import { Language } from "./languages";
 import { Logger, withGroup } from "./logging";
@@ -330,7 +330,7 @@ export async function uploadArtifacts(
   // some issues early.
   if (isInTestMode()) {
     await scanArtifactsForTokens(toUpload, logger);
-    core.exportVariable("CODEQL_ACTION_ARTIFACT_SCAN_FINISHED", "true");
+    exportEnvVar("CODEQL_ACTION_ARTIFACT_SCAN_FINISHED", "true");
   }
 
   const suffix = getArtifactSuffix(getOptionalInput("matrix"));

src/environment.test.ts

@@ -0,0 +1,12 @@
+import test from "ava";
+
+import { Env, ReadOnlyEnv } from "./environment";
+import { getTestEnv, setupTests } from "./testing-utils";
+
+setupTests(test);
+
+test("isTestingEnv() is true", (t) => {
+  t.true(new ReadOnlyEnv(process.env).isTestingEnv());
+  t.true(new Env(process.env).isTestingEnv());
+  t.true(getTestEnv().isTestingEnv());
+});

src/environment.ts

@@ -1,3 +1,10 @@
+import * as core from "@actions/core";
+
+/**
+ * This constant is set in `ava.setup.mjs` for tests.
+ */
+declare const __CODEQL_ACTION_TEST_ENV__: string | undefined;
+
 /**
  * Environment variables used by Default Setup to communicate the private registry proxy configuration.
  */
@@ -211,8 +218,20 @@ export enum ActionsEnvVars {
   RUNNER_TOOL_CACHE = "RUNNER_TOOL_CACHE",
 }
 
+/** Environment variables which are not specific to CodeQL. */
+export enum SystemEnvVar {
+  /**
+   * Used by Node and related tools to indicate what kind of environment we are running in.
+   */
+  NODE_ENV = "NODE_ENV",
+}
+
 /** A type representing all known environment variables. */
-export type KnownEnvVar = EnvVar | ActionsEnvVars | RegistryProxyVars;
+export type KnownEnvVar =
+  | EnvVar
+  | ActionsEnvVars
+  | RegistryProxyVars
+  | SystemEnvVar;
 
 /**
  * Gets an environment variable, but throws an error if it is not set.
@@ -289,6 +308,26 @@ export class ReadOnlyEnv<T extends string | undefined = string | undefined> {
   public entries(): Array<[string, T]> {
     return Object.entries(this.vars);
   }
+
+  /**
+   * Gets a value indicating whether we should skip uploads of
+   * all kinds (SARIF results, status reports, DBs, ...).
+   *
+   * This is not guaranteed to be set in all test environments.
+   */
+  public isSkippingUploadsInTests(): boolean {
+    return this.getOptional(EnvVar.TEST_MODE) === "true";
+  }
+
+  /**
+   * Gets a value indicative of whether we are in a testing environment
+   * by testing whether the value of the `NODE_ENV` variable is "test".
+   * This is expected to be the case if e.g. `ava` is running the tests
+   * or if this instance was constructed by `getTestEnv`.
+   */
+  public isTestingEnv(): boolean {
+    return __CODEQL_ACTION_TEST_ENV__ === "unit-test";
+  }
 }
 
 /**
@@ -307,6 +346,26 @@ export class Env<
     this.changed = true;
   }
 
+  /**
+   * Wrapper around `core.exportVariable` which does not call `core.exportVariable`
+   * when running unit tests. This is important, because otherwise `core.exportVariable`
+   * sets environment variables for other steps in a workflow when we run unit tests in CI.
+   *
+   * @param name The name of the environment variable to set and export.
+   * @param val The value to set and export for the environment variable.
+   */
+  public export(name: string, val: T): void {
+    // Setting the environment variable for this instance is always OK, including
+    // in tests, since we use fresh `Env` instances whenever needed. This allows
+    // tests to pass that rely on that part of the `core.exportVariable` behaviour.
+    this.set(name, val);
+
+    // Call `core.exportVariable` whenever we are not in a test environment.
+    if (!this.isTestingEnv()) {
+      core.exportVariable(name, val);
+    }
+  }
+
   /** Gets a value indicating whether `set` was called at least once. */
   public hasChanged(): boolean {
     return this.changed;
@@ -317,3 +376,34 @@ export class Env<
 export function getEnv(env: NodeJS.ProcessEnv = process.env): Env {
   return new Env(env);
 }
+
+/**
+ * Returns whether we are in test mode. This is used by CodeQL Action PR checks.
+ *
+ * In test mode, we skip several uploads (SARIF results, status reports, DBs, ...).
+ *
+ * @deprecated
+ *  The purpose of this function is ambiguous. Use `isSkippingUploadsInTests` on
+ *  a `ReadOnlyEnv` instance instead for equivalent behaviour. Use `isTestingEnv`
+ *  to determine if we are running in a unit test.
+ */
+export function isInTestMode(): boolean {
+  return getEnv().isSkippingUploadsInTests();
+}
+
+/**
+ * Wrapper around `core.exportVariable` which does not call `core.exportVariable`
+ * when running unit tests. This is important, because otherwise `core.exportVariable`
+ * sets environment variables for other steps in a workflow when we run unit tests in CI.
+ *
+ * @deprecated Use `export` on an `Env` instance instead.
+ */
+export function exportEnvVar(name: string, val: any): void {
+  const env = getEnv();
+
+  if (typeof val === "string") {
+    env.export(name, val);
+  } else {
+    env.export(name, JSON.stringify(val));
+  }
+}

src/init-action-post.ts

@@ -21,7 +21,7 @@ import {
   DependencyCachingUsageReport,
   getDependencyCacheUsage,
 } from "./dependency-caching";
-import { EnvVar, getEnv } from "./environment";
+import { EnvVar, getEnv, exportEnvVar } from "./environment";
 import { initFeatures } from "./feature-flags";
 import * as gitUtils from "./git-utils";
 import * as initActionPostHelper from "./init-action-post-helper";
@@ -166,7 +166,7 @@ function getFinalJobStatus(config: Config | undefined): JobStatus {
   let jobStatus: JobStatus;
 
   if (process.env[EnvVar.ANALYZE_DID_COMPLETE_SUCCESSFULLY] === "true") {
-    core.exportVariable(EnvVar.JOB_STATUS, JobStatus.SuccessStatus);
+    exportEnvVar(EnvVar.JOB_STATUS, JobStatus.SuccessStatus);
     jobStatus = JobStatus.SuccessStatus;
   } else if (config !== undefined) {
     // - We have computed a CodeQL config
@@ -191,7 +191,7 @@ function getFinalJobStatus(config: Config | undefined): JobStatus {
 
   // This shouldn't be necessary, but in the odd case that we run more than one
   // `init` post step, ensure the job status is consistent between them.
-  core.exportVariable(EnvVar.JOB_STATUS, jobStatus);
+  exportEnvVar(EnvVar.JOB_STATUS, jobStatus);
   return jobStatus;
 }
 

src/init-action.ts

@@ -5,7 +5,12 @@ import * as core from "@actions/core";
 import * as io from "@actions/io";
 import * as semver from "semver";
 
-import { Action, ActionState, runInActions } from "./action-common";
+import {
+  Action,
+  ActionState,
+  extendActionState,
+  runInActions,
+} from "./action-common";
 import {
   FileCmdNotFoundError,
   getActionVersion,
@@ -93,7 +98,6 @@ import {
   checkActionVersion,
   getErrorMessage,
   BuildMode,
-  getOptionalEnvVar,
 } from "./util";
 import { checkWorkflow } from "./workflow";
 
@@ -253,7 +257,7 @@ async function run(
     );
     const repositoryProperties = repositoryPropertiesResult.orElse({});
 
-    core.exportVariable(EnvVar.INIT_ACTION_HAS_RUN, "true");
+    actionState.env.export(EnvVar.INIT_ACTION_HAS_RUN, "true");
 
     // path.resolve() respects the intended semantics of source-root. If
     // source-root is relative, it is relative to the GITHUB_WORKSPACE. If
@@ -278,7 +282,9 @@ async function run(
     }
 
     // Compute the value of the `config-file` input.
-    const actionStateWithFeatures = { ...actionState, features };
+    const actionStateWithFeatures = extendActionState(actionState, {
+      features,
+    });
     configFile = await getConfigFileInput(
       actionStateWithFeatures,
       repositoryProperties,
@@ -369,7 +375,7 @@ async function run(
         );
       }
       if (semver.lt(actualVer, publicPreview)) {
-        core.exportVariable(EnvVar.EXPERIMENTAL_FEATURES, "true");
+        actionState.env.export(EnvVar.EXPERIMENTAL_FEATURES, "true");
         logger.info("Experimental Rust analysis enabled");
       }
     }
@@ -517,9 +523,9 @@ async function run(
     }
 
     // Forward Go flags
-    const goFlags = process.env["GOFLAGS"];
+    const goFlags = actionState.env.getOptional("GOFLAGS");
     if (goFlags) {
-      core.exportVariable("GOFLAGS", goFlags);
+      actionState.env.export("GOFLAGS", goFlags);
       core.warning(
         "Passing the GOFLAGS env parameter to the init action is deprecated. Please move this to the analyze action.",
       );
@@ -565,7 +571,7 @@ async function run(
 
             // Store the original location of our wrapper script somewhere where we can
             // later retrieve it from and cross-check that it hasn't been changed.
-            core.exportVariable(EnvVar.GO_BINARY_LOCATION, goWrapperPath);
+            actionState.env.export(EnvVar.GO_BINARY_LOCATION, goWrapperPath);
           } catch (e) {
             logger.warning(
               `Analyzing Go on Linux, but failed to install wrapper script. Tracing custom builds may fail: ${e}`,
@@ -574,7 +580,7 @@ async function run(
         } else {
           // Store the location of the original Go binary, so we can check that no setup tasks were performed after the
           // `init` Action ran.
-          core.exportVariable(EnvVar.GO_BINARY_LOCATION, goBinaryPath);
+          actionState.env.export(EnvVar.GO_BINARY_LOCATION, goBinaryPath);
         }
       } catch (e) {
         logger.warning(
@@ -609,12 +615,12 @@ async function run(
     // threads it would ask extractors to use. See help text for the "--ram" and "--threads"
     // options at https://codeql.github.com/docs/codeql-cli/manual/database-trace-command/
     // for details.
-    core.exportVariable(
+    actionState.env.export(
       "CODEQL_RAM",
       process.env["CODEQL_RAM"] ||
         getCodeQLMemoryLimit(getOptionalInput("ram"), logger).toString(),
     );
-    core.exportVariable(
+    actionState.env.export(
       "CODEQL_THREADS",
       process.env["CODEQL_THREADS"] ||
         getThreadsFlagValue(getOptionalInput("threads"), logger).toString(),
@@ -622,12 +628,15 @@ async function run(
 
     // Disable Kotlin extractor if feature flag set
     if (await features.getValue(Feature.DisableKotlinAnalysisEnabled)) {
-      core.exportVariable("CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN", "true");
+      actionState.env.export(
+        "CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN",
+        "true",
+      );
     }
 
     // Emergency override to force the CodeQL CLI back to the JGit-based Git backend.
     if (await features.getValue(Feature.ForceJGit)) {
-      core.exportVariable("CODEQL_GIT_BACKEND", "jgit");
+      actionState.env.export("CODEQL_GIT_BACKEND", "jgit");
     }
 
     const kotlinLimitVar =
@@ -636,7 +645,7 @@ async function run(
       (await codeQlVersionAtLeast(codeql, "2.20.3")) &&
       !(await codeQlVersionAtLeast(codeql, "2.20.4"))
     ) {
-      core.exportVariable(kotlinLimitVar, "2.1.20");
+      actionState.env.export(kotlinLimitVar, "2.1.20");
     }
 
     // Restore dependency cache(s), if they exist.
@@ -685,7 +694,7 @@ async function run(
       config.buildMode === BuildMode.None &&
       config.languages.includes(BuiltInLanguage.java)
     ) {
-      core.exportVariable(
+      actionState.env.export(
         EnvVar.JAVA_EXTRACTOR_MINIMIZE_DEPENDENCY_JARS,
         "true",
       );
@@ -743,7 +752,7 @@ async function run(
     const tracerConfig = await getCombinedTracerConfig(logger, codeql, config);
     if (tracerConfig !== undefined) {
       for (const [key, value] of Object.entries(tracerConfig.env)) {
-        core.exportVariable(key, value);
+        actionState.env.export(key, value);
       }
     }
 
@@ -751,10 +760,10 @@ async function run(
     if (await features.getValue(Feature.JavaNetworkDebugging)) {
       // Get the existing value of `JAVA_TOOL_OPTIONS`, if any.
       const existingJavaToolOptions =
-        getOptionalEnvVar(JavaEnvVars.JAVA_TOOL_OPTIONS) || "";
+        actionState.env.getOptional(JavaEnvVars.JAVA_TOOL_OPTIONS) ?? "";
 
       // Add the network debugging options.
-      core.exportVariable(
+      actionState.env.export(
         JavaEnvVars.JAVA_TOOL_OPTIONS,
         `${existingJavaToolOptions} -Djavax.net.debug=all`,
       );

src/init.test.ts

@@ -1,14 +1,13 @@
 import * as fs from "fs";
 import path from "path";
 
-import * as core from "@actions/core";
 import * as github from "@actions/github";
 import test, { ExecutionContext } from "ava";
 import * as sinon from "sinon";
 
 import * as actionsUtil from "./actions-util";
 import { createStubCodeQL } from "./codeql";
-import { ActionsEnvVars } from "./environment";
+import * as environment from "./environment";
 import { Feature } from "./feature-flags";
 import {
   checkPacksForOverlayCompatibility,
@@ -85,7 +84,7 @@ for (const { runnerEnv, ErrorConstructor, message } of [
     `cleanupDatabaseClusterDirectory throws a ${ErrorConstructor.name} when cleanup fails on ${runnerEnv} runner`,
     async (t) => {
       await withTmpDir(async (tmpDir: string) => {
-        process.env[ActionsEnvVars.RUNNER_ENVIRONMENT] = runnerEnv;
+        process.env[environment.ActionsEnvVars.RUNNER_ENVIRONMENT] = runnerEnv;
 
         const dbLocation = path.resolve(tmpDir, "dbs");
         fs.mkdirSync(dbLocation, { recursive: true });
@@ -546,7 +545,7 @@ test.serial(
 test.serial(
   "file coverage deprecation warning for org-owned repo with default setup recommends repo property",
   (t) => {
-    const exportVariableStub = sinon.stub(core, "exportVariable");
+    const exportEnvVarStub = sinon.stub(environment, "exportEnvVar");
     sinon.stub(actionsUtil, "isDefaultSetup").returns(true);
     github.context.payload = {
       repository: {
@@ -566,14 +565,14 @@ test.serial(
         'with the name `github-codeql-file-coverage-on-prs` and the type "True/false", then set this property to ' +
         "`true` in the repository's settings.",
     );
-    t.true(exportVariableStub.calledOnce);
+    t.true(exportEnvVarStub.calledOnce);
   },
 );
 
 test.serial(
   "file coverage deprecation warning for org-owned repo with advanced setup recommends env var and repo property",
   (t) => {
-    const exportVariableStub = sinon.stub(core, "exportVariable");
+    const exportEnvVarStub = sinon.stub(environment, "exportEnvVar");
     sinon.stub(actionsUtil, "isDefaultSetup").returns(false);
     github.context.payload = {
       repository: {
@@ -594,14 +593,14 @@ test.serial(
         'with the name `github-codeql-file-coverage-on-prs` and the type "True/false", then set this property to ' +
         "`true` in the repository's settings.",
     );
-    t.true(exportVariableStub.calledOnce);
+    t.true(exportEnvVarStub.calledOnce);
   },
 );
 
 test.serial(
   "file coverage deprecation warning for user-owned repo with default setup recommends advanced setup",
   (t) => {
-    const exportVariableStub = sinon.stub(core, "exportVariable");
+    const exportEnvVarStub = sinon.stub(environment, "exportEnvVar");
     sinon.stub(actionsUtil, "isDefaultSetup").returns(true);
     github.context.payload = {
       repository: {
@@ -620,14 +619,14 @@ test.serial(
         "To opt out of this change, switch to an advanced setup workflow and " +
         "set the `CODEQL_ACTION_FILE_COVERAGE_ON_PRS` environment variable to `true`.",
     );
-    t.true(exportVariableStub.calledOnce);
+    t.true(exportEnvVarStub.calledOnce);
   },
 );
 
 test.serial(
   "file coverage deprecation warning for user-owned repo with advanced setup recommends env var",
   (t) => {
-    const exportVariableStub = sinon.stub(core, "exportVariable");
+    const exportEnvVarStub = sinon.stub(environment, "exportEnvVar");
     sinon.stub(actionsUtil, "isDefaultSetup").returns(false);
     github.context.payload = {
       repository: {
@@ -645,14 +644,14 @@ test.serial(
         "to improve analysis performance. File coverage information will still be computed on non-PR analyses.\n\n" +
         "To opt out of this change, set the `CODEQL_ACTION_FILE_COVERAGE_ON_PRS` environment variable to `true`.",
     );
-    t.true(exportVariableStub.calledOnce);
+    t.true(exportEnvVarStub.calledOnce);
   },
 );
 
 test.serial(
   "file coverage deprecation warning for unknown owner type with default setup recommends advanced setup",
   (t) => {
-    const exportVariableStub = sinon.stub(core, "exportVariable");
+    const exportEnvVarStub = sinon.stub(environment, "exportEnvVar");
     sinon.stub(actionsUtil, "isDefaultSetup").returns(true);
     github.context.payload = { repository: undefined };
     const messages: LoggedMessage[] = [];
@@ -666,14 +665,14 @@ test.serial(
         "To opt out of this change, switch to an advanced setup workflow and " +
         "set the `CODEQL_ACTION_FILE_COVERAGE_ON_PRS` environment variable to `true`.",
     );
-    t.true(exportVariableStub.calledOnce);
+    t.true(exportEnvVarStub.calledOnce);
   },
 );
 
 test.serial(
   "file coverage deprecation warning for unknown owner type with advanced setup recommends env var",
   (t) => {
-    const exportVariableStub = sinon.stub(core, "exportVariable");
+    const exportEnvVarStub = sinon.stub(environment, "exportEnvVar");
     sinon.stub(actionsUtil, "isDefaultSetup").returns(false);
     github.context.payload = { repository: undefined };
     const messages: LoggedMessage[] = [];
@@ -686,7 +685,7 @@ test.serial(
         "to improve analysis performance. File coverage information will still be computed on non-PR analyses.\n\n" +
         "To opt out of this change, set the `CODEQL_ACTION_FILE_COVERAGE_ON_PRS` environment variable to `true`.",
     );
-    t.true(exportVariableStub.calledOnce);
+    t.true(exportEnvVarStub.calledOnce);
   },
 );
 
@@ -695,10 +694,10 @@ test.serial(
   (t) => {
     process.env["CODEQL_ACTION_DID_LOG_FILE_COVERAGE_ON_PRS_DEPRECATION"] =
       "true";
-    const exportVariableStub = sinon.stub(core, "exportVariable");
+    const exportEnvVarStub = sinon.stub(environment, "exportEnvVar");
     const messages: LoggedMessage[] = [];
     logFileCoverageOnPrsDeprecationWarning(getRecordingLogger(messages));
     t.is(messages.length, 0);
-    t.true(exportVariableStub.notCalled);
+    t.true(exportEnvVarStub.notCalled);
   },
 );

src/init.ts

@@ -1,7 +1,6 @@
 import * as fs from "fs";
 import * as path from "path";
 
-import * as core from "@actions/core";
 import * as toolrunner from "@actions/exec/lib/toolrunner";
 import * as github from "@actions/github";
 import * as io from "@actions/io";
@@ -17,7 +16,7 @@ import {
 import { GitHubApiDetails } from "./api-client";
 import { CodeQL, setupCodeQL } from "./codeql";
 import * as configUtils from "./config-utils";
-import { EnvVar } from "./environment";
+import { EnvVar, exportEnvVar } from "./environment";
 import {
   CodeQLDefaultVersionInfo,
   Feature,
@@ -411,5 +410,5 @@ export function logFileCoverageOnPrsDeprecationWarning(logger: Logger): void {
   }
 
   logger.warning(message);
-  core.exportVariable(EnvVar.DID_LOG_FILE_COVERAGE_ON_PRS_DEPRECATION, "true");
+  exportEnvVar(EnvVar.DID_LOG_FILE_COVERAGE_ON_PRS_DEPRECATION, "true");
 }

src/overlay/caching.test.ts

@@ -8,6 +8,7 @@ import * as sinon from "sinon";
 import * as actionsUtil from "../actions-util";
 import * as apiClient from "../api-client";
 import type { ResolveDatabaseOutput } from "../codeql";
+import * as environment from "../environment";
 import * as gitUtils from "../git-utils";
 import { BuiltInLanguage } from "../languages";
 import { getRunnerLogger } from "../logging";
@@ -82,7 +83,7 @@ const testDownloadOverlayBaseDatabaseFromCache = makeMacro({
 
       sinon.stub(apiClient, "getAutomationID").resolves("test-automation-id/");
 
-      sinon.stub(utils, "isInTestMode").returns(testCase.isInTestMode);
+      sinon.stub(environment, "isInTestMode").returns(testCase.isInTestMode);
 
       if (testCase.restoreCacheResult instanceof Error) {
         sinon

src/setup-codeql-action.ts

@@ -1,6 +1,11 @@
 import * as core from "@actions/core";
 
-import { Action, ActionState, runInActions } from "./action-common";
+import {
+  Action,
+  ActionState,
+  extendActionState,
+  runInActions,
+} from "./action-common";
 import {
   getActionVersion,
   getOptionalInput,
@@ -131,7 +136,9 @@ async function run(
     );
     const repositoryProperties = repositoryPropertiesResult.orElse({});
 
-    const actionStateWithFeatures = { ...actionState, features };
+    const actionStateWithFeatures = extendActionState(actionState, {
+      features,
+    });
 
     const statusReportBase = await createStatusReportBase(
       ActionName.SetupCodeQL,
@@ -184,7 +191,7 @@ async function run(
     core.setOutput("codeql-path", codeql.getPath());
     core.setOutput("codeql-version", (await codeql.getVersion()).version);
 
-    core.exportVariable(EnvVar.SETUP_CODEQL_ACTION_HAS_RUN, "true");
+    actionState.env.export(EnvVar.SETUP_CODEQL_ACTION_HAS_RUN, "true");
   } catch (unwrappedError) {
     const error = wrapError(unwrappedError);
     core.setFailed(error.message);

src/setup-codeql.ts

@@ -3,7 +3,6 @@ import { OutgoingHttpHeaders } from "http";
 import * as path from "path";
 import { performance } from "perf_hooks";
 
-import * as core from "@actions/core";
 import * as toolcache from "@actions/tool-cache";
 import { default as deepEqual } from "fast-deep-equal";
 import * as semver from "semver";
@@ -29,7 +28,7 @@ import {
   makeDiagnostic,
   makeTelemetryDiagnostic,
 } from "./diagnostics";
-import { EnvVar, getEnv } from "./environment";
+import { EnvVar, exportEnvVar, getEnv } from "./environment";
 import {
   CODEQL_VERSION_ZSTD_BUNDLE,
   CodeQLDefaultVersionInfo,
@@ -1071,7 +1070,7 @@ export async function setupCodeQLBundle(
 
   // Record that this job now has a copy of the CodeQL tools, so that a later step doesn't delete
   // the toolcache out from under the path we are about to return.
-  core.exportVariable(EnvVar.HAS_SET_UP_CODEQL, "true");
+  exportEnvVar(EnvVar.HAS_SET_UP_CODEQL, "true");
 
   return {
     codeqlFolder,

src/start-proxy-action.ts

@@ -3,7 +3,12 @@ import * as path from "path";
 
 import * as core from "@actions/core";
 
-import { Action, ActionState, runInActions } from "./action-common";
+import {
+  Action,
+  ActionState,
+  extendActionState,
+  runInActions,
+} from "./action-common";
 import * as actionsUtil from "./actions-util";
 import { getGitHubVersion } from "./api-client";
 import { FeatureEnablement, initFeatures } from "./feature-flags";
@@ -98,7 +103,8 @@ async function run(action: ActionState<["Base", "Logger", "Env", "Actions"]>) {
     };
 
     // Start the Proxy
-    const proxyBin = await getProxyBinaryPath({ ...action, features });
+    const actionWithFeatures = extendActionState(action, { features });
+    const proxyBin = await getProxyBinaryPath(actionWithFeatures);
     const proxyInfo = await startProxy(
       proxyBin,
       proxyConfig,

src/status-report.ts

@@ -23,7 +23,13 @@ import type { ComputedInput, InputName } from "./config/inputs";
 import { parseRegistriesWithoutCredentials } from "./config/pack-registries";
 import type { DependencyCacheRestoreStatusReport } from "./dependency-caching";
 import { DocUrl } from "./doc-url";
-import { EnvVar, getEnv, ReadOnlyEnv, RegistryProxyVars } from "./environment";
+import {
+  EnvVar,
+  getEnv,
+  ReadOnlyEnv,
+  RegistryProxyVars,
+  exportEnvVar,
+} from "./environment";
 import { getRef } from "./git-utils";
 import * as json from "./json";
 import type { Logger } from "./logging";
@@ -71,9 +77,7 @@ export function getDisplayActionName(actionName: ActionName): string {
  * environment and returns it.
  * If a new UUID is generated, it is also exported as an environment variable.
  */
-export function getJobUUID(
-  action: ActionState<["Logger", "ReadOnlyEnv", "Actions"]>,
-) {
+export function getJobUUID(action: ActionState<["Logger", "Env", "Actions"]>) {
   // Check if we already have a UUID for the analysis and return it if so.
   const existingJobRunUuid = action.env.getOptional(EnvVar.JOB_RUN_UUID);
 
@@ -86,7 +90,7 @@ export function getJobUUID(
   const jobRunUuid = uuid.v4();
   action.logger.info(`Job run UUID is ${jobRunUuid}.`);
 
-  action.actions.exportVariable(EnvVar.JOB_RUN_UUID, jobRunUuid);
+  action.env.export(EnvVar.JOB_RUN_UUID, jobRunUuid);
   return jobRunUuid;
 }
 
@@ -268,12 +272,12 @@ export function getJobStatusDisplayName(status: JobStatus): string {
  */
 function setJobStatusIfUnsuccessful(actionStatus: ActionStatus) {
   if (actionStatus === "user-error") {
-    core.exportVariable(
+    exportEnvVar(
       EnvVar.JOB_STATUS,
       process.env[EnvVar.JOB_STATUS] ?? JobStatus.ConfigErrorStatus,
     );
   } else if (actionStatus === "failure" || actionStatus === "aborted") {
-    core.exportVariable(
+    exportEnvVar(
       EnvVar.JOB_STATUS,
       process.env[EnvVar.JOB_STATUS] ?? JobStatus.FailureStatus,
     );
@@ -376,7 +380,7 @@ export async function createStatusReportBase(
     let workflowStartedAt = process.env[EnvVar.WORKFLOW_STARTED_AT];
     if (workflowStartedAt === undefined) {
       workflowStartedAt = actionStartedAt.toISOString();
-      core.exportVariable(EnvVar.WORKFLOW_STARTED_AT, workflowStartedAt);
+      exportEnvVar(EnvVar.WORKFLOW_STARTED_AT, workflowStartedAt);
     }
     const runnerOs = getRequiredEnvParam("RUNNER_OS");
     const codeQlCliVersion = getCachedCodeQlVersion(
@@ -388,7 +392,7 @@ export async function createStatusReportBase(
     // re-export the testing environment variable so that it is available to subsequent steps,
     // even if it was only set for this step
     if (testingEnvironment) {
-      core.exportVariable(EnvVar.TESTING_ENVIRONMENT, testingEnvironment);
+      exportEnvVar(EnvVar.TESTING_ENVIRONMENT, testingEnvironment);
     }
     const isSteadyStateDefaultSetupRun =
       process.env["CODE_SCANNING_IS_STEADY_STATE_DEFAULT_SETUP"] === "true";

src/testing-utils.ts

@@ -202,10 +202,6 @@ class TestActionsEnv implements ActionsEnv {
   public getOptionalInput(_name: string): string | undefined {
     return undefined;
   }
-
-  public exportVariable(name: string, value: string): void {
-    this.env.set(name, value);
-  }
 }
 
 /**

src/upload-lib.ts

@@ -14,7 +14,7 @@ import { getGitHubVersion, wrapApiConfigurationError } from "./api-client";
 import { CodeQL, getCodeQL } from "./codeql";
 import { getConfig } from "./config-utils";
 import { readDiffRangesJsonFile } from "./diff-informed-analysis-utils";
-import { EnvVar } from "./environment";
+import { EnvVar, exportEnvVar } from "./environment";
 import { FeatureEnablement } from "./feature-flags";
 import * as fingerprints from "./fingerprints";
 import * as gitUtils from "./git-utils";
@@ -126,7 +126,7 @@ async function combineSarifFilesUsingCLI(
       logger.warning(
         `Uploading multiple SARIF runs with the same category is deprecated ${deprecationWarningMessage}. Please update your workflow to upload a single run per category. ${deprecationMoreInformationMessage}`,
       );
-      core.exportVariable("CODEQL_MERGE_SARIF_DEPRECATION_WARNING", "true");
+      exportEnvVar("CODEQL_MERGE_SARIF_DEPRECATION_WARNING", "true");
     }
 
     // If not, use the naive method of combining the files.
@@ -1032,7 +1032,7 @@ export function validateUniqueCategory(
           `Category: (${id ? id : "none"}) Tool: (${tool ? tool : "none"})`,
       );
     }
-    core.exportVariable(sentinelEnvVar, sentinelEnvVar);
+    exportEnvVar(sentinelEnvVar, sentinelEnvVar);
   }
 }
 

src/util.ts

@@ -14,13 +14,23 @@ import * as apiCompatibility from "./api-compatibility.json";
 import type { CodeQL } from "./codeql";
 import type { Pack } from "./config/db-config";
 import type { Config } from "./config-utils";
-import { EnvVar, getRequiredEnvParam } from "./environment";
+import {
+  EnvVar,
+  getRequiredEnvParam,
+  isInTestMode,
+  exportEnvVar,
+} from "./environment";
 import * as json from "./json";
 import { Language } from "./languages";
 import { Logger } from "./logging";
 
 // Re-export for backwards compatibility to avoid updating a lot of imports elsewhere.
-export { getRequiredEnvParam, getOptionalEnvVar, getEnv } from "./environment";
+export {
+  getRequiredEnvParam,
+  getOptionalEnvVar,
+  getEnv,
+  isInTestMode,
+} from "./environment";
 
 /**
  * The name of the file containing the base database OIDs, as stored in the
@@ -542,7 +552,7 @@ export function checkGitHubVersionInRange(
     );
   }
   hasBeenWarnedAboutVersion = true;
-  core.exportVariable(CODEQL_ACTION_WARNED_ABOUT_VERSION_ENV_VAR, true);
+  exportEnvVar(CODEQL_ACTION_WARNED_ABOUT_VERSION_ENV_VAR, true);
 }
 
 export enum DisallowedAPIVersionReason {
@@ -586,11 +596,11 @@ export function assertNever(value: never): never {
  * knowing what version of CodeQL we're running.
  */
 export function initializeEnvironment(version: string) {
-  core.exportVariable(EnvVar.FEATURE_MULTI_LANGUAGE, "false");
-  core.exportVariable(EnvVar.FEATURE_SANDWICH, "false");
-  core.exportVariable(EnvVar.FEATURE_SARIF_COMBINE, "true");
-  core.exportVariable(EnvVar.FEATURE_WILL_UPLOAD, "true");
-  core.exportVariable(EnvVar.VERSION, version);
+  exportEnvVar(EnvVar.FEATURE_MULTI_LANGUAGE, "false");
+  exportEnvVar(EnvVar.FEATURE_SANDWICH, "false");
+  exportEnvVar(EnvVar.FEATURE_SARIF_COMBINE, "true");
+  exportEnvVar(EnvVar.FEATURE_WILL_UPLOAD, "true");
+  exportEnvVar(EnvVar.VERSION, version);
 }
 
 export class HTTPError extends Error {
@@ -711,15 +721,6 @@ export function isGoodVersion(versionSpec: string) {
   return !BROKEN_VERSIONS.includes(versionSpec);
 }
 
-/**
- * Returns whether we are in test mode. This is used by CodeQL Action PR checks.
- *
- * In test mode, we skip several uploads (SARIF results, status reports, DBs, ...).
- */
-export function isInTestMode(): boolean {
-  return process.env[EnvVar.TEST_MODE] === "true";
-}
-
 /**
  * Returns whether we specifically want to skip uploading SARIF files.
  */
@@ -948,7 +949,7 @@ export async function checkDiskUsage(
       } else {
         logger.debug(message);
       }
-      core.exportVariable(EnvVar.HAS_WARNED_ABOUT_DISK_SPACE, "true");
+      exportEnvVar(EnvVar.HAS_WARNED_ABOUT_DISK_SPACE, "true");
     }
     return {
       numAvailableBytes: diskUsage.bavail * blockSizeInBytes,
@@ -997,7 +998,7 @@ export function checkActionVersion(
           "https://github.blog/changelog/2025-10-28-upcoming-deprecation-of-codeql-action-v3/",
       );
       // set LOG_VERSION_DEPRECATION env var to prevent the warning from being logged multiple times
-      core.exportVariable(EnvVar.LOG_VERSION_DEPRECATION, "true");
+      exportEnvVar(EnvVar.LOG_VERSION_DEPRECATION, "true");
     }
   }
 }