Merge pull request #4216 from github/backport-v3.38.3-24c54180a

Merge releases/v4 into releases/v3

.github/actions/check-sarif/action.yml

@@ -16,5 +16,5 @@ inputs:
       Comma separated list of query ids that should NOT be included in this SARIF file.
 
 runs:
-  using: node24
+  using: node20
   main: index.js

.github/actions/verify-debug-artifact-scan-completed/action.yml

@@ -1,6 +1,6 @@
 name: Verify that the best-effort debug artifact scan completed
 description: Verifies that the best-effort debug artifact scan completed successfully during tests
 runs:
-  using: node24
+  using: node20
   main: index.js
   post: post.js

.github/workflows/__all-platform-bundle.yml

@@ -0,0 +1,99 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - All-platform bundle
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: all-platform-bundle-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  all-platform-bundle:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest-xlarge
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: All-platform bundle
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'true'
+          setup-kotlin: 'true'
+      - id: init
+        uses: ./../action/init
+        with:
+          # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__analysis-kinds.yml

@@ -0,0 +1,147 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Analysis kinds
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: analysis-kinds-${{github.ref}}
+jobs:
+  analysis-kinds:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+            analysis-kinds: code-scanning
+          - os: ubuntu-latest
+            version: linked
+            analysis-kinds: code-quality
+          - os: ubuntu-latest
+            version: linked
+            analysis-kinds: code-scanning,code-quality
+          - os: ubuntu-latest
+            version: linked
+            analysis-kinds: risk-assessment
+          - os: ubuntu-latest
+            version: nightly-latest
+            analysis-kinds: code-scanning
+          - os: ubuntu-latest
+            version: nightly-latest
+            analysis-kinds: code-quality
+          - os: ubuntu-latest
+            version: nightly-latest
+            analysis-kinds: code-scanning,code-quality
+          - os: ubuntu-latest
+            version: nightly-latest
+            analysis-kinds: risk-assessment
+    name: Analysis kinds
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          analysis-kinds: ${{ matrix.analysis-kinds }}
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+          post-processed-sarif-path: '${{ runner.temp }}/post-processed'
+
+      - name: Upload SARIF files
+        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
+        with:
+          name: |
+            analysis-kinds-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}
+          path: '${{ runner.temp }}/results/*.sarif'
+          retention-days: 7
+
+      - name: Upload post-processed SARIF
+        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
+        with:
+          name: |
+            post-processed-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}
+          path: '${{ runner.temp }}/post-processed'
+          retention-days: 7
+          if-no-files-found: error
+
+      - name: Check quality query does not appear in security SARIF
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        env:
+          SARIF_PATH: '${{ runner.temp }}/results/javascript.sarif'
+          EXPECT_PRESENT: 'false'
+        with:
+          script: ${{ env.CHECK_SCRIPT }}
+      - name: Check quality query appears in quality SARIF
+        if: contains(matrix.analysis-kinds, 'code-quality')
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        env:
+          SARIF_PATH: '${{ runner.temp }}/results/javascript.quality.sarif'
+          EXPECT_PRESENT: 'true'
+        with:
+          script: ${{ env.CHECK_SCRIPT }}
+    env:
+      CODEQL_ACTION_RISK_ASSESSMENT_ID: 1
+      CHECK_SCRIPT: |
+        const fs = require('fs');
+
+        const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+        const expectPresent = JSON.parse(process.env['EXPECT_PRESENT']);
+        const run = sarif.runs[0];
+        const extensions = run.tool.extensions;
+
+        if (extensions === undefined) {
+          core.setFailed('`extensions` property not found in the SARIF run property bag.');
+        }
+
+        // ID of a query we want to check the presence for
+        const targetId = 'js/regex/always-matches';
+        const found = extensions.find(extension => extension.rules && extension.rules.find(rule => rule.id === targetId));
+
+        if (found && expectPresent) {
+          console.log(`Found rule with id '${targetId}'.`);
+        } else if (!found && !expectPresent) {
+          console.log(`Rule with id '${targetId}' was not found.`);
+        } else {
+          core.setFailed(`${ found ? "Found" : "Didn't find" } rule ${targetId}`);
+        }
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__analyze-ref-input.yml

@@ -0,0 +1,97 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: "PR Check - Analyze: 'ref' and 'sha' from inputs"
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: analyze-ref-input-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  analyze-ref-input:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: "Analyze: 'ref' and 'sha' from inputs"
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: cpp,csharp,java,javascript,python
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{ github.sha }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          ref: 'refs/heads/main'
+          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-action.yml

@@ -0,0 +1,96 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - autobuild-action
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: autobuild-action-${{github.ref}}-${{inputs.dotnet-version}}
+jobs:
+  autobuild-action:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: autobuild-action
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: csharp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        env:
+          # Explicitly disable the CLR tracer.
+          COR_ENABLE_PROFILING: ''
+          COR_PROFILER: ''
+          COR_PROFILER_PATH_64: ''
+          CORECLR_ENABLE_PROFILING: ''
+          CORECLR_PROFILER: ''
+          CORECLR_PROFILER_PATH_64: ''
+      - uses: ./../action/analyze
+      - name: Check database
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d csharp ]]; then
+            echo "Did not find a C# database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-direct-tracing-with-working-dir.yml

@@ -0,0 +1,101 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Autobuild direct tracing (custom working directory)
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      java-version:
+        type: string
+        description: The version of Java to install
+        required: false
+        default: '17'
+  workflow_call:
+    inputs:
+      java-version:
+        type: string
+        description: The version of Java to install
+        required: false
+        default: '17'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: autobuild-direct-tracing-with-working-dir-${{github.ref}}-${{inputs.java-version}}
+jobs:
+  autobuild-direct-tracing-with-working-dir:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Autobuild direct tracing (custom working directory)
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install Java
+        uses: actions/setup-java@de7274f081f381c8f8158605e0321c36c376e2e6 # v6.0.1
+        with:
+          java-version: ${{ inputs.java-version || '17' }}
+          distribution: temurin
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        run: |
+          # Make sure that Gradle build succeeds in autobuild-dir ...
+          cp -a ../action/tests/java-repo autobuild-dir
+          # ... and fails if attempted in the current directory
+          echo > build.gradle
+      - uses: ./../action/init
+        with:
+          build-mode: autobuild
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Check that indirect tracing is disabled
+        run: |
+          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
+            echo "Expected indirect tracing to be disabled, but the" \
+              "CODEQL_RUNNER environment variable is set."
+            exit 1
+          fi
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_AUTOBUILD_BUILD_MODE_DIRECT_TRACING: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-working-dir.yml

@@ -0,0 +1,78 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Autobuild working directory
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: autobuild-working-dir-${{github.ref}}
+jobs:
+  autobuild-working-dir:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Autobuild working directory
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        run: |
+          # Make sure that Gradle build succeeds in autobuild-dir ...
+          cp -a ../action/tests/java-repo autobuild-dir
+          # ... and fails if attempted in the current directory
+          echo > build.gradle
+      - uses: ./../action/init
+        with:
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+      - uses: ./../action/analyze
+      - name: Check database
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d java ]]; then
+            echo "Did not find a Java database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-autobuild.yml

@@ -0,0 +1,118 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Build mode autobuild
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      java-version:
+        type: string
+        description: The version of Java to install
+        required: false
+        default: '17'
+  workflow_call:
+    inputs:
+      java-version:
+        type: string
+        description: The version of Java to install
+        required: false
+        default: '17'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: build-mode-autobuild-${{github.ref}}-${{inputs.java-version}}
+jobs:
+  build-mode-autobuild:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Build mode autobuild
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install Java
+        uses: actions/setup-java@de7274f081f381c8f8158605e0321c36c376e2e6 # v6.0.1
+        with:
+          java-version: ${{ inputs.java-version || '17' }}
+          distribution: temurin
+      - name: Install yq
+        if: runner.os == 'Windows'
+        env:
+          YQ_PATH: ${{ runner.temp }}/yq
+          YQ_VERSION: v4.50.1
+        run: |-
+          gh release download --repo mikefarah/yq --pattern "yq_windows_amd64.exe" "$YQ_VERSION" -O "$YQ_PATH/yq.exe"
+          echo "$YQ_PATH" >> "$GITHUB_PATH"
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Set up Java test repo configuration
+        run: |
+          mv * .github ../action/tests/multi-language-repo/
+          mv ../action/tests/multi-language-repo/.github/workflows .github
+          mv ../action/tests/java-repo/* .
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: autobuild
+          db-location: '${{ runner.temp }}/customDbLocation'
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "autobuild" ]]; then
+            echo "Expected build mode to be 'autobuild' but was $build_mode"
+            exit 1
+          fi
+
+      - name: Check that indirect tracing is disabled
+        run: |
+          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
+            echo "Expected indirect tracing to be disabled, but the" \
+              "CODEQL_RUNNER environment variable is set."
+            exit 1
+          fi
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-manual.yml

@@ -0,0 +1,107 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Build mode manual
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: build-mode-manual-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  build-mode-manual:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Build mode manual
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: manual
+          db-location: '${{ runner.temp }}/customDbLocation'
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "manual" ]]; then
+            echo "Expected build mode to be 'manual' but was $build_mode"
+            exit 1
+          fi
+
+      - name: Build code
+        run: ./build.sh
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-none.yml

@@ -0,0 +1,81 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Build mode none
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: build-mode-none-${{github.ref}}
+jobs:
+  build-mode-none:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Build mode none
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: none
+          db-location: '${{ runner.temp }}/customDbLocation'
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "none" ]]; then
+            echo "Expected build mode to be 'none' but was $build_mode"
+            exit 1
+          fi
+
+      # The latest nightly supports omitting the autobuild Action when the build mode is specified.
+      - uses: ./../action/autobuild
+        if: matrix.version != 'nightly-latest'
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-rollback.yml

@@ -0,0 +1,82 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Build mode rollback
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: build-mode-rollback-${{github.ref}}
+jobs:
+  build-mode-rollback:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Build mode rollback
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Set up Java test repo configuration
+        run: |
+          mv * .github ../action/tests/multi-language-repo/
+          mv ../action/tests/multi-language-repo/.github/workflows .github
+          mv ../action/tests/java-repo/* .
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: none
+          db-location: '${{ runner.temp }}/customDbLocation'
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "autobuild" ]]; then
+            echo "Expected build mode to be 'autobuild' but was $build_mode"
+            exit 1
+          fi
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_DISABLE_JAVA_BUILDLESS: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-from-nightly.yml

@@ -0,0 +1,67 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Bundle: From nightly'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: bundle-from-nightly-${{github.ref}}
+jobs:
+  bundle-from-nightly:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: 'Bundle: From nightly'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - id: init
+        uses: ./../action/init
+        env:
+          CODEQL_ACTION_FORCE_NIGHTLY: true
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: javascript
+      - name: Fail if the CodeQL version is not a nightly
+        if: ${{ !contains(steps.init.outputs.codeql-version, '+') }}
+        run: exit 1
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-from-toolcache.yml

@@ -0,0 +1,83 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Bundle: From toolcache'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: bundle-from-toolcache-${{github.ref}}
+jobs:
+  bundle-from-toolcache:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: toolcache
+    name: 'Bundle: From toolcache'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install @actions/tool-cache
+        run: npm install @actions/tool-cache@3
+      - name: Check toolcache contains CodeQL
+        continue-on-error: true
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            if (allCodeqlVersions.length === 0) {
+              throw new Error(`CodeQL could not be found in the toolcache`);
+            }
+      - id: setup-codeql
+        uses: ./../action/setup-codeql
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Check CodeQL is installed within the toolcache
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
+            if (allCodeqlVersions.length === 0) {
+              throw new Error('CodeQL not found in toolcache');
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-toolcache.yml

@@ -0,0 +1,104 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Bundle: Caching checks'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: bundle-toolcache-${{github.ref}}
+jobs:
+  bundle-toolcache:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: 'Bundle: Caching checks'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            fs.rmdirSync(codeqlPath, { recursive: true });
+      - name: Install @actions/tool-cache
+        run: npm install @actions/tool-cache@3
+      - name: Check toolcache does not contain CodeQL
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            if (allCodeqlVersions.length !== 0) {
+              throw new Error(`CodeQL should not be found in the toolcache, but found ${allCodeqlVersions}`);
+            }
+            console.log('No versions of CodeQL found in the toolcache');
+      - id: init
+        uses: ./../action/init
+        with:
+          # Request multiple languages so this check uses the combined bundle.
+          languages: javascript,python
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Check CodeQL is installed within the toolcache
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
+            if (allCodeqlVersions.length === 0) {
+              throw new Error('CodeQL not found in toolcache');
+            }
+            if (allCodeqlVersions.length > 1) {
+              throw new Error('Multiple CodeQL versions found in toolcache');
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cleanup-db-cluster-dir.yml

@@ -0,0 +1,77 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Clean up database cluster directory
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: cleanup-db-cluster-dir-${{github.ref}}
+jobs:
+  cleanup-db-cluster-dir:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Clean up database cluster directory
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Add a file to the database cluster directory
+        run: |
+          mkdir -p "${{ runner.temp }}/customDbLocation/javascript"
+          touch "${{ runner.temp }}/customDbLocation/javascript/a-file-to-clean-up.txt"
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: none
+          db-location: '${{ runner.temp }}/customDbLocation'
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate file cleaned up
+        run: |
+          if [[ -f "${{ runner.temp }}/customDbLocation/javascript/a-file-to-clean-up.txt" ]]; then
+            echo "File was not cleaned up"
+            exit 1
+          fi
+          echo "File was cleaned up"
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__config-export.yml

@@ -0,0 +1,100 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Config export
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: config-export-${{github.ref}}
+jobs:
+  config-export:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Config export
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          queries: security-extended
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
+        with:
+          name: config-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: '${{ runner.temp }}/results/javascript.sarif'
+          retention-days: 7
+      - name: Check config properties appear in SARIF
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        env:
+          SARIF_PATH: '${{ runner.temp }}/results/javascript.sarif'
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+            const configSummary = run.properties.codeqlConfigSummary;
+
+            if (configSummary === undefined) {
+              core.setFailed('`codeqlConfigSummary` property not found in the SARIF run property bag.');
+            }
+            if (configSummary.disableDefaultQueries !== false) {
+              core.setFailed('`disableDefaultQueries` property incorrect: expected false, got ' +
+                `${JSON.stringify(configSummary.disableDefaultQueries)}.`);
+            }
+            const expectedQueries = [{ type: 'builtinSuite', uses: 'security-extended' }];
+            // Use JSON.stringify to deep-equal the arrays.
+            if (JSON.stringify(configSummary.queries) !== JSON.stringify(expectedQueries)) {
+              core.setFailed(`\`queries\` property incorrect: expected ${JSON.stringify(expectedQueries)}, got ` +
+                `${JSON.stringify(configSummary.queries)}.`);
+            }
+            core.info('Finished config export tests.');
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__config-input.yml

@@ -0,0 +1,94 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Config input
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: config-input-${{github.ref}}
+jobs:
+  config-input:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Config input
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install Node.js
+        uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
+        with:
+          node-version: 20.x
+          cache: npm
+      - name: Install newer npm
+        run: npm install -g npm@11.19.1
+      - name: Install dependencies
+        run: npm ci
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Copy queries into workspace
+        run: |
+          cp -a ../action/queries .
+
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: javascript
+          build-mode: none
+          config: |
+            disable-default-queries: true
+            queries:
+              - name: Run custom query
+                uses: ./queries/default-setup-environment-variables.ql
+            paths-ignore:
+              - tests
+              - lib
+
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+
+      - name: Check SARIF
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run: javascript/codeql-action/default-setup-env-vars
+          queries-not-run: javascript/codeql-action/default-setup-context-properties
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cpp-deptrace-disabled.yml

@@ -0,0 +1,79 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - C/C++: disabling autoinstalling dependencies (Linux)'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: cpp-deptrace-disabled-${{github.ref}}
+jobs:
+  cpp-deptrace-disabled:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'C/C++: disabling autoinstalling dependencies (Linux)'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        run: |
+          cp -a ../action/tests/cpp-autobuild autobuild-dir
+      - uses: ./../action/init
+        with:
+          languages: cpp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+        env:
+          CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: false
+      - run: |
+          if ls /usr/bin/errno; then
+            echo "C/C++ autobuild installed errno, but it should not have since auto-install dependencies is disabled."
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cpp-deptrace-enabled-on-macos.yml

@@ -0,0 +1,79 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - C/C++: autoinstalling dependencies is skipped (macOS)'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: cpp-deptrace-enabled-on-macos-${{github.ref}}
+jobs:
+  cpp-deptrace-enabled-on-macos:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: macos-latest
+            version: nightly-latest
+    name: 'C/C++: autoinstalling dependencies is skipped (macOS)'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        run: |
+          cp -a ../action/tests/cpp-autobuild autobuild-dir
+      - uses: ./../action/init
+        with:
+          languages: cpp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+        env:
+          CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
+      - run: |
+          if ! ls /usr/bin/errno; then
+            echo "As expected, CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES is a no-op on macOS"
+          else
+            echo "CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES should not have had any effect on macOS"
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cpp-deptrace-enabled.yml

@@ -0,0 +1,79 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - C/C++: autoinstalling dependencies (Linux)'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: cpp-deptrace-enabled-${{github.ref}}
+jobs:
+  cpp-deptrace-enabled:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'C/C++: autoinstalling dependencies (Linux)'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        run: |
+          cp -a ../action/tests/cpp-autobuild autobuild-dir
+      - uses: ./../action/init
+        with:
+          languages: cpp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+        env:
+          CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
+      - run: |
+          if ! ls /usr/bin/errno; then
+            echo "Did not autoinstall errno"
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__diagnostics-export.yml

@@ -0,0 +1,136 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Diagnostic export
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: diagnostics-export-${{github.ref}}
+jobs:
+  diagnostics-export:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Diagnostic export
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Add test diagnostics
+        env:
+          CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
+        run: |
+          "$CODEQL_PATH" database add-diagnostic \
+            "$RUNNER_TEMP/codeql_databases/javascript" \
+            --file-path /path/to/file \
+            --plaintext-message "Plaintext message" \
+            --source-id "lang/diagnostics/example" \
+            --source-name "Diagnostic name" \
+            --ready-for-status-page
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
+        with:
+          name: diagnostics-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: '${{ runner.temp }}/results/javascript.sarif'
+          retention-days: 7
+      - name: Check diagnostics appear in SARIF
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        env:
+          SARIF_PATH: '${{ runner.temp }}/results/javascript.sarif'
+        with:
+          script: |
+            const fs = require('fs');
+
+            function checkStatusPageNotification(n) {
+              const expectedMessage = 'Plaintext message';
+              if (n.message.text !== expectedMessage) {
+                core.setFailed(`Expected the status page diagnostic to have the message '${expectedMessage}', but found '${n.message.text}'.`);
+              }
+              if (n.locations.length !== 1) {
+                core.setFailed(`Expected the status page diagnostic to have exactly 1 location, but found ${n.locations.length}.`);
+              }
+            }
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const statusPageNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'lang/diagnostics/example' && n.properties?.visibility?.statusPage
+            );
+            if (statusPageNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${statusPageNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+            checkStatusPageNotification(statusPageNotifications[0]);
+
+            const notifications = run.tool.driver.notifications;
+            const diagnosticNotification = notifications.filter(n =>
+              n.id === 'lang/diagnostics/example' && n.name === 'lang/diagnostics/example' &&
+                n.fullDescription.text === 'Diagnostic name'
+            );
+            if (diagnosticNotification.length !== 1) {
+              core.setFailed(
+                'Expected exactly one notification for this diagnostic in the ' +
+                  `'runs[].tool.driver.notifications[]' SARIF property, but found ` +
+                  `${diagnosticNotification.length}. All notifications: ` +
+                  `${JSON.stringify(notifications)}.`
+              );
+            }
+
+            core.info('Finished diagnostic export test');
+    env:
+      CODEQL_ACTION_EXPORT_DIAGNOSTICS: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__export-file-baseline-information.yml

@@ -0,0 +1,128 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Export file baseline information
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: export-file-baseline-information-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  export-file-baseline-information:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Export file baseline information
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+      - name: Upload SARIF
+        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
+        with:
+          name: with-baseline-information-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: '${{ runner.temp }}/results/javascript.sarif'
+          retention-days: 7
+      - name: Check results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          expected_baseline_languages="c csharp go java kotlin javascript python ruby"
+          if [[ $RUNNER_OS == "macOS" ]]; then
+            expected_baseline_languages+=" swift"
+          fi
+
+          for lang in ${expected_baseline_languages}; do
+            rule_name="cli/expected-extracted-files/${lang}"
+            found_notification=$(jq --arg rule_name "${rule_name}" '[.runs[0].tool.driver.notifications |
+              select(. != null) | flatten | .[].id] | any(. == $rule_name)' javascript.sarif)
+            if [[ "${found_notification}" != "true" ]]; then
+              echo "Expected SARIF output to contain notification '${rule_name}', but found no such notification."
+              exit 1
+            else
+              echo "Found notification '${rule_name}'."
+            fi
+          done
+    env:
+      CODEQL_ACTION_SKIP_FILE_COVERAGE_ON_PRS: false
+      CODEQL_ACTION_SUBLANGUAGE_FILE_COVERAGE: true
+      CODEQL_ACTION_PER_LANGUAGE_BUNDLES: false
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__extractor-ram-threads.yml

@@ -0,0 +1,80 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Extractor ram and threads options test
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: extractor-ram-threads-${{github.ref}}
+jobs:
+  extractor-ram-threads:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Extractor ram and threads options test
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: java
+          ram: 230
+          threads: 1
+      - name: Assert Results
+        run: |
+          if [ "${CODEQL_RAM}" != "230" ]; then
+            echo "CODEQL_RAM is '${CODEQL_RAM}' instead of 230"
+            exit 1
+          fi
+          if [ "${CODEQL_EXTRACTOR_JAVA_RAM}" != "230" ]; then
+            echo "CODEQL_EXTRACTOR_JAVA_RAM is '${CODEQL_EXTRACTOR_JAVA_RAM}' instead of 230"
+            exit 1
+          fi
+          if [ "${CODEQL_THREADS}" != "1" ]; then
+            echo "CODEQL_THREADS is '${CODEQL_THREADS}' instead of 1"
+            exit 1
+          fi
+          if [ "${CODEQL_EXTRACTOR_JAVA_THREADS}" != "1" ]; then
+            echo "CODEQL_EXTRACTOR_JAVA_THREADS is '${CODEQL_EXTRACTOR_JAVA_THREADS}' instead of 1"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__global-proxy.yml

@@ -0,0 +1,101 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Proxy test
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: global-proxy-${{github.ref}}
+jobs:
+  global-proxy:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Proxy test
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'false'
+      - name: Block direct internet access to force proxy usage
+        run: |
+          apt-get update -qq && apt-get install -y -qq iptables >/dev/null 2>&1
+          PROXY_IP=$(getent hosts squid-proxy | awk '{ print $1 }')
+          echo "Squid proxy IP: $PROXY_IP"
+          # Allow all traffic to the proxy container
+          iptables -A OUTPUT -d "$PROXY_IP" -j ACCEPT
+          # Allow DNS resolution
+          iptables -A OUTPUT -p udp --dport 53 -j ACCEPT
+          iptables -A OUTPUT -p tcp --dport 53 -j ACCEPT
+          # Allow loopback
+          iptables -A OUTPUT -o lo -j ACCEPT
+          # Allow already-established connections (from checkout/prepare-test)
+          iptables -A OUTPUT -m conntrack --ctstate ESTABLISHED,RELATED -j ACCEPT
+          # Block all other outbound HTTP and HTTPS, ensuring direct access fails
+          iptables -A OUTPUT -p tcp --dport 80 -j REJECT --reject-with tcp-reset
+          iptables -A OUTPUT -p tcp --dport 443 -j REJECT --reject-with tcp-reset
+          echo "Direct HTTP/HTTPS access is now blocked - all traffic must go through the proxy"
+
+      - name: Set proxy environment variables
+        shell: bash
+        run: |
+          echo "http_proxy=http://squid-proxy:3128" >> $GITHUB_ENV
+          echo "HTTP_PROXY=http://squid-proxy:3128" >> $GITHUB_ENV
+          echo "https_proxy=http://squid-proxy:3128" >> $GITHUB_ENV
+          echo "HTTPS_PROXY=http://squid-proxy:3128" >> $GITHUB_ENV
+
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TOLERATE_MISSING_GIT_VERSION: true
+      CODEQL_ACTION_TEST_MODE: true
+    container:
+      image: ubuntu:22.04
+      options: --cap-add=NET_ADMIN
+    services:
+      squid-proxy:
+        image: ubuntu/squid:latest
+        ports:
+          - 3128:3128

.github/workflows/__go-custom-queries.yml

@@ -0,0 +1,97 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: Custom queries'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: go-custom-queries-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  go-custom-queries:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'Go: Custom queries'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: go
+          config-file: ./.github/codeql/custom-queries.yml
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-indirect-tracing-workaround-diagnostic.yml

@@ -0,0 +1,109 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: diagnostic when Go is changed after init step'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: go-indirect-tracing-workaround-diagnostic-${{github.ref}}-${{inputs.go-version}}
+jobs:
+  go-indirect-tracing-workaround-diagnostic:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: 'Go: diagnostic when Go is changed after init step'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      # Deliberately change Go after the `init` step
+      - uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: '1.20'
+      - name: Build code
+        run: go build main.go
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+      - name: Check diagnostic appears in SARIF
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        env:
+          SARIF_PATH: '${{ runner.temp }}/results/go.sarif'
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const statusPageNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'go/workflow/go-installed-after-codeql-init' && n.properties?.visibility?.statusPage
+            );
+            if (statusPageNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${statusPageNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-indirect-tracing-workaround-no-file-program.yml

@@ -0,0 +1,110 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: diagnostic when `file` is not installed'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: go-indirect-tracing-workaround-no-file-program-${{github.ref}}-${{inputs.go-version}}
+jobs:
+  go-indirect-tracing-workaround-no-file-program:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: 'Go: diagnostic when `file` is not installed'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove `file` program
+        run: |
+          echo $(which file)
+          sudo rm -rf $(which file)
+          echo $(which file)
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: go build main.go
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+      - name: Check diagnostic appears in SARIF
+        uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v8.0.0
+        env:
+          SARIF_PATH: '${{ runner.temp }}/results/go.sarif'
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const statusPageNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'go/workflow/file-program-unavailable' && n.properties?.visibility?.statusPage
+            );
+            if (statusPageNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${statusPageNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-indirect-tracing-workaround.yml

@@ -0,0 +1,104 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: workaround for indirect tracing'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: go-indirect-tracing-workaround-${{github.ref}}-${{inputs.go-version}}
+jobs:
+  go-indirect-tracing-workaround:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: 'Go: workaround for indirect tracing'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: go build main.go
+      - uses: ./../action/analyze
+      - run: |
+          if [[ -z "${CODEQL_ACTION_GO_BINARY}" ]]; then
+            echo "Expected the workaround for indirect tracing of static binaries to trigger, but the" \
+              "CODEQL_ACTION_GO_BINARY environment variable is not set."
+            exit 1
+          fi
+          if [[ ! -f "${CODEQL_ACTION_GO_BINARY}" ]]; then
+            echo "CODEQL_ACTION_GO_BINARY is set, but the corresponding script does not exist."
+            exit 1
+          fi
+
+
+          # Once we start running Bash 4.2 in all environments, we can replace the
+          # `! -z` flag with the more elegant `-v` which confirms that the variable
+          # is actually unset and not potentially set to a blank value.
+          if [[ ! -z "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" ]]; then
+            echo "Expected the Go autobuilder not to be run, but the" \
+              "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was set."
+            exit 1
+          fi
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-tracing-autobuilder.yml

@@ -0,0 +1,110 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: tracing with autobuilder step'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: go-tracing-autobuilder-${{github.ref}}-${{inputs.go-version}}
+jobs:
+  go-tracing-autobuilder:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.21.4
+          - os: ubuntu-latest
+            version: stable-v2.22.4
+          - os: ubuntu-latest
+            version: stable-v2.23.9
+          - os: ubuntu-latest
+            version: stable-v2.24.3
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: 'Go: tracing with autobuilder step'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+      - uses: ./../action/analyze
+      - run: |
+          if [[ "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" != true ]]; then
+            echo "Expected the Go autobuilder to be run, but the" \
+              "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was not true."
+            exit 1
+          fi
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-tracing-custom-build-steps.yml

@@ -0,0 +1,113 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: tracing with custom build steps'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: go-tracing-custom-build-steps-${{github.ref}}-${{inputs.go-version}}
+jobs:
+  go-tracing-custom-build-steps:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.21.4
+          - os: ubuntu-latest
+            version: stable-v2.22.4
+          - os: ubuntu-latest
+            version: stable-v2.23.9
+          - os: ubuntu-latest
+            version: stable-v2.24.3
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: 'Go: tracing with custom build steps'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: go build main.go
+      - uses: ./../action/analyze
+      - run: |
+          # Once we start running Bash 4.2 in all environments, we can replace the
+          # `! -z` flag with the more elegant `-v` which confirms that the variable
+          # is actually unset and not potentially set to a blank value.
+          if [[ ! -z "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" ]]; then
+            echo "Expected the Go autobuilder not to be run, but the" \
+              "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was set."
+            exit 1
+          fi
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-tracing-legacy-workflow.yml

@@ -0,0 +1,104 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: tracing with legacy workflow'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: go-tracing-legacy-workflow-${{github.ref}}-${{inputs.go-version}}
+jobs:
+  go-tracing-legacy-workflow:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.21.4
+          - os: ubuntu-latest
+            version: stable-v2.22.4
+          - os: ubuntu-latest
+            version: stable-v2.23.9
+          - os: ubuntu-latest
+            version: stable-v2.24.3
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: 'Go: tracing with legacy workflow'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+      - run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__init-with-registries.yml

@@ -0,0 +1,119 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Packaging: Download using registries'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: init-with-registries-${{github.ref}}
+jobs:
+  init-with-registries:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'Packaging: Download using registries'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      packages: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Init with registries
+        uses: ./../action/init
+        with:
+          db-location: '${{ runner.temp }}/customDbLocation'
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          config-file: ./.github/codeql/codeql-config-registries.yml
+          languages: javascript
+          registries: |
+            - url: "https://ghcr.io/v2/"
+              packages: "*/*"
+              token: "${{ secrets.GITHUB_TOKEN }}"
+
+      - name: Verify packages installed
+        run: |
+          PRIVATE_PACK="$HOME/.codeql/packages/codeql-testing/private-pack"
+          CODEQL_PACK1="$HOME/.codeql/packages/codeql-testing/codeql-pack1"
+
+          if [[ -d $PRIVATE_PACK ]]
+          then
+              echo "$PRIVATE_PACK was installed."
+          else
+              echo "::error $PRIVATE_PACK pack was not installed."
+              exit 1
+          fi
+
+          if [[ -d $CODEQL_PACK1 ]]
+          then
+              echo "$CODEQL_PACK1 was installed."
+          else
+              echo "::error $CODEQL_PACK1 pack was not installed."
+              exit 1
+          fi
+
+      - name: Verify qlconfig.yml file was created
+        run: |
+          QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
+          echo "Expected qlconfig.yml file to be created at $QLCONFIG_PATH"
+          if [[ -f $QLCONFIG_PATH ]]
+          then
+              echo "qlconfig.yml file was created."
+          else
+              echo "::error qlconfig.yml file was not created."
+              exit 1
+          fi
+
+      - name: Verify contents of qlconfig.yml
+        run: |
+          QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
+          cat $QLCONFIG_PATH | yq -e '.registries[] | select(.url == "https://ghcr.io/v2/") | select(.packages == "*/*")'
+          if [[ $? -eq 0 ]]
+          then
+              echo "Registry was added to qlconfig.yml file."
+          else
+              echo "::error Registry was not added to qlconfig.yml file."
+              echo "Contents of qlconfig.yml file:"
+              cat $QLCONFIG_PATH
+              exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__javascript-source-root.yml

@@ -0,0 +1,80 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Custom source root
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: javascript-source-root-${{github.ref}}
+jobs:
+  javascript-source-root:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Custom source root
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Move codeql-action
+        run: |
+          mkdir ../new-source-root
+          mv * ../new-source-root
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          source-root: ../new-source-root
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          skip-queries: true
+      - name: Assert database exists
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d javascript ]]; then
+            echo "Did not find a JavaScript database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__job-run-uuid-sarif.yml

@@ -0,0 +1,81 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Job run UUID added to SARIF
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: job-run-uuid-sarif-${{github.ref}}
+jobs:
+  job-run-uuid-sarif:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Job run UUID added to SARIF
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+      - name: Upload SARIF
+        uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
+        with:
+          name: ${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: '${{ runner.temp }}/results/javascript.sarif'
+          retention-days: 7
+      - name: Check results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          actual=$(jq -r '.runs[0].properties.jobRunUuid' javascript.sarif)
+          if [[ "$actual" != "$CODEQL_ACTION_JOB_RUN_UUID" ]]; then
+            echo "Expected SARIF output to contain job run UUID '$CODEQL_ACTION_JOB_RUN_UUID', but found '$actual'."
+            exit 1
+          else
+            echo "Found job run UUID '$actual'."
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__language-aliases.yml

@@ -0,0 +1,72 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Language aliases
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: language-aliases-${{github.ref}}
+jobs:
+  language-aliases:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Language aliases
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: C#,java-kotlin,typescript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: 'Check languages'
+        run: |
+          expected_languages="csharp,java,javascript"
+          actual_languages=$(jq -r '.languages | join(",")' "$RUNNER_TEMP"/config)
+
+          if [ "$expected_languages" != "$actual_languages" ]; then
+            echo "Resolved languages did not match expected list. " \
+              "Expected languages: $expected_languages. Actual languages: $actual_languages."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__linux-arm64.yml

@@ -0,0 +1,106 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Linux Arm64
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: linux-arm64-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  linux-arm64:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-24.04-arm
+            version: nightly-latest
+    name: Linux Arm64
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: ${{ env.LANGUAGES }}
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          upload-database: false
+      - name: Assert databases exist
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          for lang in ${LANGUAGES//,/ }; do
+            if [[ ! -d "$lang" ]]; then
+              echo "Did not find a database for $lang"
+              exit 1
+            fi
+            echo "Found database for $lang"
+          done
+    env:
+      LANGUAGES: cpp,csharp,go,java,javascript,python,ruby
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__local-bundle.yml

@@ -0,0 +1,98 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Local CodeQL bundle
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: local-bundle-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  local-bundle:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Local CodeQL bundle
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Fetch latest CodeQL bundle
+        run: |
+          wget https://github.com/github/codeql-action/releases/latest/download/codeql-bundle-linux64.tar.zst
+      - id: init
+        uses: ./../action/init
+        with:
+          # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
+          tools: ./codeql-bundle-linux64.tar.zst
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__multi-language-autodetect.yml

@@ -0,0 +1,197 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Multi-language repository
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: multi-language-autodetect-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  multi-language-autodetect:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: macos-15-xlarge
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: macos-15-xlarge
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.21.4
+          - os: macos-15-xlarge
+            version: stable-v2.21.4
+          - os: ubuntu-latest
+            version: stable-v2.22.4
+          - os: macos-15-xlarge
+            version: stable-v2.22.4
+          - os: ubuntu-latest
+            version: stable-v2.23.9
+          - os: macos-latest-xlarge
+            version: stable-v2.23.9
+          - os: ubuntu-latest
+            version: stable-v2.24.3
+          - os: macos-latest-xlarge
+            version: stable-v2.24.3
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest-xlarge
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest-xlarge
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest-xlarge
+            version: nightly-latest
+    name: Multi-language repository
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Python 3.13.15 for older CLI versions
+        # Older CLI versions don't work with Python 3.13.16 or newer because their Python extractor
+        # imports `importlib._bootstrap._ERR_MSG`, which those Python versions no longer define.
+        # See https://github.com/github/codeql-action/pull/3212
+        if: matrix.version != 'nightly-latest' && matrix.version != 'linked'
+        uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
+        with:
+          python-version: '3.13.15'
+
+      - name: Use Xcode 16
+        # Only the older CodeQL CLI versions need Xcode 16, and these run on macOS 15.
+        if: matrix.os == 'macos-15-xlarge'
+        run: sudo xcode-select -s "/Applications/Xcode_16.app"
+
+      - uses: ./../action/init
+        id: init
+        with:
+          db-location: '${{ runner.temp }}/customDbLocation'
+          languages: ${{ runner.os == 'Linux' && 'cpp,csharp,go,java,javascript,python,ruby' || '' }}
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Build code
+        run: ./build.sh
+
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+
+      - name: Check language autodetect for all languages excluding Swift
+        run: |
+          CPP_DB=${{ fromJson(steps.analysis.outputs.db-locations).cpp }}
+          if [[ ! -d $CPP_DB ]] || [[ ! $CPP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for CPP, or created it in the wrong location."
+            exit 1
+          fi
+          CSHARP_DB=${{ fromJson(steps.analysis.outputs.db-locations).csharp }}
+          if [[ ! -d $CSHARP_DB ]] || [[ ! $CSHARP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for C Sharp, or created it in the wrong location."
+            exit 1
+          fi
+          GO_DB=${{ fromJson(steps.analysis.outputs.db-locations).go }}
+          if [[ ! -d $GO_DB ]] || [[ ! $GO_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Go, or created it in the wrong location."
+            exit 1
+          fi
+          JAVA_DB=${{ fromJson(steps.analysis.outputs.db-locations).java }}
+          if [[ ! -d $JAVA_DB ]] || [[ ! $JAVA_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Java, or created it in the wrong location."
+            exit 1
+          fi
+          JAVASCRIPT_DB=${{ fromJson(steps.analysis.outputs.db-locations).javascript }}
+          if [[ ! -d $JAVASCRIPT_DB ]] || [[ ! $JAVASCRIPT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Javascript, or created it in the wrong location."
+            exit 1
+          fi
+          PYTHON_DB=${{ fromJson(steps.analysis.outputs.db-locations).python }}
+          if [[ ! -d $PYTHON_DB ]] || [[ ! $PYTHON_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Python, or created it in the wrong location."
+            exit 1
+          fi
+          RUBY_DB=${{ fromJson(steps.analysis.outputs.db-locations).ruby }}
+          if [[ ! -d $RUBY_DB ]] || [[ ! $RUBY_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Ruby, or created it in the wrong location."
+            exit 1
+          fi
+
+      - name: Check language autodetect for Swift on macOS
+        if: runner.os == 'macOS'
+        run: |
+          SWIFT_DB=${{ fromJson(steps.analysis.outputs.db-locations).swift }}
+          if [[ ! -d $SWIFT_DB ]] || [[ ! $SWIFT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Swift, or created it in the wrong location."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_CLEANUP_TOOLCACHE_BUNDLES: true
+      CODEQL_ACTION_RESOLVE_SUPPORTED_LANGUAGES_USING_CLI: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__overlay-init-fallback.yml

@@ -0,0 +1,76 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Overlay database init fallback
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: overlay-init-fallback-${{github.ref}}
+jobs:
+  overlay-init-fallback:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Overlay database init fallback
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: actions # Any language without overlay support will do
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+        env:
+          CODEQL_OVERLAY_DATABASE_MODE: overlay-base
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases/actions"
+          if ! grep -q 'overlayBaseDatabase: false' codeql-database.yml ; then
+            echo "This test needs to be updated to use a non-overlay language."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-codescanning-config-inputs-js.yml

@@ -0,0 +1,132 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Packaging: Config and input passed to the CLI'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: packaging-codescanning-config-inputs-js-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  packaging-codescanning-config-inputs-js:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'Packaging: Config and input passed to the CLI'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Install Node.js
+        uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
+        with:
+          node-version: 20.x
+          cache: npm
+      - name: Install newer npm
+        run: npm install -g npm@11.19.1
+      - name: Install dependencies
+        run: npm ci
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: '.github/codeql/codeql-config-packaging3.yml'
+          packs: +codeql-testing/codeql-pack1@1.0.0
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
+
+      - name: Assert Results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-config-inputs-js.yml

@@ -0,0 +1,132 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Packaging: Config and input'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: packaging-config-inputs-js-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  packaging-config-inputs-js:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'Packaging: Config and input'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Install Node.js
+        uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
+        with:
+          node-version: 20.x
+          cache: npm
+      - name: Install newer npm
+        run: npm install -g npm@11.19.1
+      - name: Install dependencies
+        run: npm ci
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: '.github/codeql/codeql-config-packaging3.yml'
+          packs: +codeql-testing/codeql-pack1@1.0.0
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
+
+      - name: Assert Results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-config-js.yml

@@ -0,0 +1,131 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Packaging: Config file'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: packaging-config-js-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  packaging-config-js:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'Packaging: Config file'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Install Node.js
+        uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
+        with:
+          node-version: 20.x
+          cache: npm
+      - name: Install newer npm
+        run: npm install -g npm@11.19.1
+      - name: Install dependencies
+        run: npm ci
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: '.github/codeql/codeql-config-packaging.yml'
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
+
+      - name: Assert Results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-inputs-js.yml

@@ -0,0 +1,131 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Packaging: Action input'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: packaging-inputs-js-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  packaging-inputs-js:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'Packaging: Action input'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Install Node.js
+        uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
+        with:
+          node-version: 20.x
+          cache: npm
+      - name: Install newer npm
+        run: npm install -g npm@11.19.1
+      - name: Install dependencies
+        run: npm ci
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: '.github/codeql/codeql-config-packaging2.yml'
+          languages: javascript
+          packs: codeql-testing/codeql-pack1@1.0.0, codeql-testing/codeql-pack2, codeql-testing/codeql-pack3:other-query.ql
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
+
+      - name: Assert Results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__per-language-bundle-validation.yml

@@ -0,0 +1,164 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Per-language bundles
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: per-language-bundle-validation-${{github.ref}}
+jobs:
+  per-language-bundle-validation:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - language: actions
+            os: ubuntu-latest
+            version: nightly-latest
+            expected-extractors: actions javascript
+          - language: cpp
+            os: ubuntu-latest
+            version: nightly-latest
+            build-mode: manual
+            build-command: gcc -o main main.c
+          - language: csharp
+            os: ubuntu-latest
+            version: nightly-latest
+            build-mode: none
+          - language: go
+            os: ubuntu-latest
+            version: nightly-latest
+            build-mode: autobuild
+          - language: java
+            os: ubuntu-latest
+            version: nightly-latest
+            build-mode: none
+          - language: javascript
+            os: ubuntu-latest
+            version: nightly-latest
+          - language: python
+            os: ubuntu-latest
+            version: nightly-latest
+          - language: ruby
+            os: ubuntu-latest
+            version: nightly-latest
+          - language: rust
+            os: ubuntu-latest
+            version: nightly-latest
+          - language: swift
+            os: macos-latest-xlarge
+            version: nightly-latest
+            build-mode: autobuild
+    name: Per-language bundles
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: ${{ matrix.language }}
+          build-mode: ${{ matrix['build-mode'] }}
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Check that the bundle contains only the expected extractors
+        env:
+          CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
+          LANGUAGE: ${{ matrix.language }}
+          EXPECTED_EXTRACTORS: ${{ matrix['expected-extractors'] || matrix.language }}
+        run: |
+          extractors="$("$CODEQL_PATH" resolve languages --format=json | jq -r 'keys[]')"
+          echo "Extractors in the bundle:"
+          echo "$extractors"
+          echo "Expected: $EXPECTED_EXTRACTORS"
+
+          for expected in $EXPECTED_EXTRACTORS; do
+            if ! echo "$extractors" | grep -qx "$expected"; then
+              echo "::error::The ${LANGUAGE} bundle does not contain the ${expected} extractor."
+              exit 1
+            fi
+          done
+
+          # If the bundle contained extractors beyond those the language needs, then it would not
+          # have been trimmed, and this job would be silently validating the combined bundle.
+          for other in actions cpp csharp go java javascript python ruby rust swift; do
+            if echo "$EXPECTED_EXTRACTORS" | grep -qw "$other"; then
+              continue
+            fi
+            if echo "$extractors" | grep -qx "$other"; then
+              echo "::error::The ${LANGUAGE} bundle also contains the ${other} extractor, so it is not trimmed."
+              exit 1
+            fi
+          done
+      - name: Check that the bundle was not added to the toolcache
+        env:
+          CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
+        run: |
+          # A bundle that is missing most of its extractors must never be left in the toolcache,
+          # where a later job analyzing a different language could pick it up. The runner image
+          # ships with its own CodeQL in the toolcache, so check where this bundle was extracted to
+          # rather than whether the toolcache contains CodeQL at all.
+          echo "CodeQL is at $CODEQL_PATH"
+          if [[ "$CODEQL_PATH" == "$RUNNER_TOOL_CACHE"/* ]]; then
+            echo "::error::The per-language bundle was added to the toolcache at $CODEQL_PATH."
+            exit 1
+          fi
+          if [[ "$CODEQL_PATH" != "$RUNNER_TEMP"/* ]]; then
+            echo "::error::Expected the per-language bundle to be extracted under $RUNNER_TEMP, but found it at $CODEQL_PATH."
+            exit 1
+          fi
+      - name: Build code
+        if: matrix['build-command']
+        run: ${{ matrix['build-command'] }}
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check that a database was created for the language
+        env:
+          DB_LOCATIONS: ${{ steps.analysis.outputs.db-locations }}
+          LANGUAGE: ${{ matrix.language }}
+        run: |
+          database="$(echo "$DB_LOCATIONS" | jq -r --arg lang "$LANGUAGE" '.[$lang] // empty')"
+          if [ -z "$database" ] || [ ! -d "$database" ]; then
+            echo "::error::No CodeQL database was created for ${LANGUAGE}."
+            echo "Databases: $DB_LOCATIONS"
+            exit 1
+          fi
+          echo "Created a ${LANGUAGE} database at ${database}."
+    env:
+      CODEQL_ACTION_PER_LANGUAGE_BUNDLES: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__remote-config.yml

@@ -0,0 +1,96 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Remote config file
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: remote-config-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  remote-config:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Remote config file
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: cpp,csharp,java,javascript,python
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{ github.sha }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__resolve-environment-action.yml

@@ -0,0 +1,85 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Resolve environment
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: resolve-environment-action-${{github.ref}}
+jobs:
+  resolve-environment-action:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Resolve environment
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: go,javascript-typescript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Resolve environment for Go
+        uses: ./../action/resolve-environment
+        id: resolve-environment-go
+        with:
+          language: go
+
+      - name: Fail if Go configuration missing
+        if: (!fromJSON(steps.resolve-environment-go.outputs.environment).configuration.go)
+        run: exit 1
+
+      - name: Resolve environment for JavaScript/TypeScript
+        uses: ./../action/resolve-environment
+        id: resolve-environment-js
+        with:
+          language: javascript-typescript
+
+      - name: Fail if JavaScript/TypeScript configuration present
+        if: fromJSON(steps.resolve-environment-js.outputs.environment).configuration.javascript
+        run: exit 1
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__rubocop-multi-language.yml

@@ -0,0 +1,74 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - RuboCop multi-language
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: rubocop-multi-language-${{github.ref}}
+jobs:
+  rubocop-multi-language:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: RuboCop multi-language
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Set up Ruby
+        uses: ruby/setup-ruby@14594264cd68ce8a2345dd349bc3d138a4ef85c8 # v1.327.0
+        with:
+          ruby-version: 2.6
+      - name: Install Code Scanning integration
+        run: bundle add code-scanning-rubocop --version 0.3.0 --skip-install
+      - name: Install dependencies
+        run: bundle install
+      - name: RuboCop run
+        run: |
+          bash -c "
+            bundle exec rubocop --require code_scanning --format CodeScanning::SarifFormatter -o rubocop.sarif
+            [[ $? -ne 2 ]]
+          "
+      - uses: ./../action/upload-sarif
+        with:
+          sarif_file: rubocop.sarif
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__ruby.yml

@@ -0,0 +1,82 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Ruby analysis
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: ruby-${{github.ref}}
+jobs:
+  ruby:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: Ruby analysis
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: ruby
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        run: |
+          RUBY_DB="${{ fromJson(steps.analysis.outputs.db-locations).ruby }}"
+          if [[ ! -d "$RUBY_DB" ]]; then
+            echo "Did not create a database for Ruby."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__rust.yml

@@ -0,0 +1,80 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Rust analysis
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: rust-${{github.ref}}
+jobs:
+  rust:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.22.1
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Rust analysis
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: rust
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        run: |
+          RUST_DB="${{ fromJson(steps.analysis.outputs.db-locations).rust }}"
+          if [[ ! -d "$RUST_DB" ]]; then
+            echo "Did not create a database for Rust."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__split-workflow.yml

@@ -0,0 +1,133 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Split workflow
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: split-workflow-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  split-workflow:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: Split workflow
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: '.github/codeql/codeql-config-packaging3.yml'
+          packs: +codeql-testing/codeql-pack1@1.0.0
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          skip-queries: true
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+
+      - name: Assert No Results
+        run: |
+          if [ "$(ls -A $RUNNER_TEMP/results)" ]; then
+            echo "Expected results directory to be empty after skipping query execution!"
+            exit 1
+          fi
+      - uses: ./../action/analyze
+        with:
+          output: '${{ runner.temp }}/results'
+          upload-database: false
+      - name: Assert Results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__start-proxy.yml

@@ -0,0 +1,105 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Start proxy
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: start-proxy-${{github.ref}}
+jobs:
+  start-proxy:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: Start proxy
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Setup proxy for registries
+        id: proxy
+        uses: ./../action/start-proxy
+        with:
+          language: java
+          registry_secrets: |
+            [
+              {
+                "type": "maven_repository",
+                "url": "https://repo.maven.apache.org/maven2/"
+              },
+              {
+                "type": "maven_repository",
+                "url": "https://repo1.maven.org/maven2"
+              }
+            ]
+
+      - name: Print proxy outputs
+        run: |
+          echo "${{ steps.proxy.outputs.proxy_host }}"
+          echo "${{ steps.proxy.outputs.proxy_port }}"
+          echo "${{ steps.proxy.outputs.proxy_urls }}"
+
+      - name: Fail if proxy outputs are not set
+        if: (!steps.proxy.outputs.proxy_host) || (!steps.proxy.outputs.proxy_port) || (!steps.proxy.outputs.proxy_ca_certificate) || (!steps.proxy.outputs.proxy_urls)
+        run: exit 1
+
+      - name: Fail if proxy_urls does not contain all registries
+        if: |
+          join(fromJSON(steps.proxy.outputs.proxy_urls)[*].type, ',') != 'maven_repository,maven_repository'
+          || !contains(steps.proxy.outputs.proxy_urls, 'https://repo.maven.apache.org/maven2/')
+          || !contains(steps.proxy.outputs.proxy_urls, 'https://repo1.maven.org/maven2')
+        run: exit 1
+
+      - uses: ./../action/init
+        env:
+          CODEQL_PROXY_HOST: ${{ steps.proxy.outputs.proxy_host }}
+          CODEQL_PROXY_PORT: ${{ steps.proxy.outputs.proxy_port }}
+          CODEQL_PROXY_CA_CERTIFICATE: ${{ steps.proxy.outputs.proxy_ca_certificate }}
+        with:
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          config-file: codeql-action@main:tests/multi-language-repo/.github/codeql/custom-queries.yml
+    env:
+      CODEQL_ACTION_PROXY_API_REQUESTS: 'true'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__submit-sarif-failure.yml

@@ -0,0 +1,82 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Submit SARIF after failure
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: submit-sarif-failure-${{github.ref}}
+jobs:
+  submit-sarif-failure:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Submit SARIF after failure
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - uses: ./init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Fail
+        # We want this job to pass if the Action correctly uploads the SARIF file for
+        # the failed run.
+        # Setting this step to continue on error means that it is marked as completing
+        # successfully, so will not fail the job.
+        continue-on-error: true
+        run: exit 1
+      - uses: ./analyze
+        # In a real workflow, this step wouldn't run. Since we used `continue-on-error`
+        # above, we manually disable it with an `if` condition.
+        if: false
+        with:
+          category: '/test-codeql-version:${{ matrix.version }}'
+    env:
+      CODEQL_ACTION_EXPECT_UPLOAD_FAILED_SARIF: true
+      CODEQL_ACTION_UPLOAD_FAILED_SARIF: true
+      CODEQL_ACTION_TEST_MODE: false
+      CODEQL_ACTION_TESTING_ENVIRONMENT: codeql-action-pr-checks

.github/workflows/__swift-autobuild.yml

@@ -0,0 +1,78 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Swift analysis using autobuild
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: swift-autobuild-${{github.ref}}
+jobs:
+  swift-autobuild:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest-xlarge
+            version: nightly-latest
+    name: Swift analysis using autobuild
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: swift
+          build-mode: autobuild
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Check working directory
+        run: pwd
+      - uses: ./../action/autobuild
+        timeout-minutes: 30
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        run: |
+          SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
+          if [[ ! -d "$SWIFT_DB" ]]; then
+            echo "Did not create a database for Swift."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__swift-custom-build.yml

@@ -0,0 +1,111 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Swift analysis using a custom build command
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: swift-custom-build-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  swift-custom-build:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest-xlarge
+            version: linked
+          - os: macos-latest-xlarge
+            version: default
+          - os: macos-latest-xlarge
+            version: nightly-latest
+    name: Swift analysis using a custom build command
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: swift
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Check working directory
+        run: pwd
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        run: |
+          SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
+          if [[ ! -d "$SWIFT_DB" ]]; then
+            echo "Did not create a database for Swift."
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__unset-environment.yml

@@ -0,0 +1,138 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Test unsetting environment variables
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: unset-environment-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  unset-environment:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Test unsetting environment variables
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          db-location: ${{ runner.temp }}/customDbLocation
+          # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: env -i PATH="$PATH" HOME="$HOME" ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - run: |
+          CPP_DB="${{ fromJson(steps.analysis.outputs.db-locations).cpp }}"
+          if [[ ! -d "$CPP_DB" ]] || [[ ! "$CPP_DB" == "${RUNNER_TEMP}/customDbLocation/cpp" ]]; then
+            echo "::error::Did not create a database for CPP, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/cpp' but actual was '${CPP_DB}'"
+            exit 1
+          fi
+          CSHARP_DB="${{ fromJson(steps.analysis.outputs.db-locations).csharp }}"
+          if [[ ! -d "$CSHARP_DB" ]] || [[ ! "$CSHARP_DB" == "${RUNNER_TEMP}/customDbLocation/csharp" ]]; then
+            echo "::error::Did not create a database for C Sharp, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/csharp' but actual was '${CSHARP_DB}'"
+            exit 1
+          fi
+          GO_DB="${{ fromJson(steps.analysis.outputs.db-locations).go }}"
+          if [[ ! -d "$GO_DB" ]] || [[ ! "$GO_DB" == "${RUNNER_TEMP}/customDbLocation/go" ]]; then
+            echo "::error::Did not create a database for Go, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/go' but actual was '${GO_DB}'"
+            exit 1
+          fi
+          JAVA_DB="${{ fromJson(steps.analysis.outputs.db-locations).java }}"
+          if [[ ! -d "$JAVA_DB" ]] || [[ ! "$JAVA_DB" == "${RUNNER_TEMP}/customDbLocation/java" ]]; then
+            echo "::error::Did not create a database for Java, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/java' but actual was '${JAVA_DB}'"
+            exit 1
+          fi
+          JAVASCRIPT_DB="${{ fromJson(steps.analysis.outputs.db-locations).javascript }}"
+          if [[ ! -d "$JAVASCRIPT_DB" ]] || [[ ! "$JAVASCRIPT_DB" == "${RUNNER_TEMP}/customDbLocation/javascript" ]]; then
+            echo "::error::Did not create a database for Javascript, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/javascript' but actual was '${JAVASCRIPT_DB}'"
+            exit 1
+          fi
+          PYTHON_DB="${{ fromJson(steps.analysis.outputs.db-locations).python }}"
+          if [[ ! -d "$PYTHON_DB" ]] || [[ ! "$PYTHON_DB" == "${RUNNER_TEMP}/customDbLocation/python" ]]; then
+            echo "::error::Did not create a database for Python, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/python' but actual was '${PYTHON_DB}'"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__upload-ref-sha-input.yml

@@ -0,0 +1,103 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: "PR Check - Upload-sarif: 'ref' and 'sha' from inputs"
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: upload-ref-sha-input-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  upload-ref-sha-input:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: "Upload-sarif: 'ref' and 'sha' from inputs"
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: cpp,csharp,java,javascript,python
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{ github.sha }}
+      - name: Build code
+        run: ./build.sh
+      # Generate some SARIF we can upload with the upload-sarif step
+      - uses: ./../action/analyze
+        with:
+          ref: 'refs/heads/main'
+          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+          upload: never
+      - uses: ./../action/upload-sarif
+        with:
+          ref: 'refs/heads/main'
+          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__upload-sarif.yml

@@ -0,0 +1,168 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Test different uses of `upload-sarif`
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: upload-sarif-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  upload-sarif:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+            analysis-kinds: code-scanning
+          - os: ubuntu-latest
+            version: default
+            analysis-kinds: code-quality
+          - os: ubuntu-latest
+            version: default
+            analysis-kinds: code-scanning,code-quality
+    name: Test different uses of `upload-sarif`
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: csharp,java,javascript,python
+          analysis-kinds: ${{ matrix.analysis-kinds }}
+      - name: Build code
+        run: ./build.sh
+      # Generate some SARIF we can upload with the upload-sarif step
+      - uses: ./../action/analyze
+        with:
+          ref: 'refs/heads/main'
+          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+          upload: never
+          output: ${{ runner.temp }}/results
+
+      - name: |
+          Upload all SARIF files for `analysis-kinds: ${{ matrix.analysis-kinds }}`
+        uses: ./../action/upload-sarif
+        id: upload-sarif
+        with:
+          ref: 'refs/heads/main'
+          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+          sarif_file: ${{ runner.temp }}/results
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:all-files/
+      - name: 'Fail for missing output from `upload-sarif` step for `code-scanning`'
+        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-scanning)
+        run: exit 1
+      - name: 'Fail for missing output from `upload-sarif` step for `code-quality`'
+        if: contains(matrix.analysis-kinds, 'code-quality') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-quality)
+        run: exit 1
+
+      - name: Upload single SARIF file for Code Scanning
+        uses: ./../action/upload-sarif
+        id: upload-single-sarif-code-scanning
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        with:
+          ref: 'refs/heads/main'
+          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+          sarif_file: ${{ runner.temp }}/results/javascript.sarif
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-scanning/
+      - name: 'Fail for missing output from `upload-single-sarif-code-scanning` step'
+        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-single-sarif-code-scanning.outputs.sarif-ids).code-scanning)
+        run: exit 1
+      - name: Upload single SARIF file for Code Quality
+        uses: ./../action/upload-sarif
+        id: upload-single-sarif-code-quality
+        if: contains(matrix.analysis-kinds, 'code-quality')
+        with:
+          ref: 'refs/heads/main'
+          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+          sarif_file: ${{ runner.temp }}/results/javascript.quality.sarif
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-quality/
+      - name: 'Fail for missing output from `upload-single-sarif-code-quality` step'
+        if: contains(matrix.analysis-kinds, 'code-quality') && !(fromJSON(steps.upload-single-sarif-code-quality.outputs.sarif-ids).code-quality)
+        run: exit 1
+
+      - name: Change SARIF file extension
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        run: mv ${{ runner.temp }}/results/javascript.sarif ${{ runner.temp }}/results/javascript.sarif.json
+      - name: Upload single non-`.sarif` file
+        uses: ./../action/upload-sarif
+        id: upload-single-non-sarif
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        with:
+          ref: 'refs/heads/main'
+          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+          sarif_file: ${{ runner.temp }}/results/javascript.sarif.json
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:non-sarif/
+      - name: 'Fail for missing output from `upload-single-non-sarif` step'
+        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-single-non-sarif.outputs.sarif-ids).code-scanning)
+        run: exit 1
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__with-checkout-path.yml

@@ -0,0 +1,146 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Use a custom `checkout_path`
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request: {}
+  merge_group:
+    types:
+      - checks_requested
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
+  group: with-checkout-path-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+jobs:
+  with-checkout-path:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Use a custom `checkout_path`
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      # This ensures we don't accidentally use the original checkout for any part of the test.
+      - name: Check out repository
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@a98b56852c35b8e3190ac28c8c2271da59106c68 # v6.0.0
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Install Go
+        uses: actions/setup-go@b7ad1dad31e06c5925ef5d2fc7ad053ef454303e # v7.0.0
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Delete original checkout
+        run: |
+          # delete the original checkout so we don't accidentally use it.
+          # Actions does not support deleting the current working directory, so we
+          # delete the contents of the directory instead.
+          rm -rf ./* .github .git
+      # Check out the actions repo again, but at a different location.
+      # choose an arbitrary SHA so that we can later test that the commit_oid is not from main
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+        with:
+          ref: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
+          path: x/y/z/some-path
+
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          # it's enough to test one compiled language and one interpreted language
+          languages: csharp,javascript
+          source-root: x/y/z/some-path/tests/multi-language-repo
+
+      - name: Build code
+        working-directory: x/y/z/some-path/tests/multi-language-repo
+        run: |
+          ./build.sh
+
+      - uses: ./../action/analyze
+        with:
+          checkout_path: x/y/z/some-path/tests/multi-language-repo
+          ref: v1.1.0
+          sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
+
+      - name: Verify SARIF after upload
+        run: |
+          PAYLOAD_FILE="$RUNNER_TEMP/payload-code-scanning.json"
+          EXPECTED_COMMIT_OID="474bbf07f9247ffe1856c6a0f94aeeb10e7afee6"
+          EXPECTED_REF="v1.1.0"
+          EXPECTED_CHECKOUT_URI_SUFFIX="/x/y/z/some-path/tests/multi-language-repo"
+
+          ACTUAL_COMMIT_OID="$(cat "$PAYLOAD_FILE" | jq -r .commit_oid)"
+          ACTUAL_REF="$(cat "$PAYLOAD_FILE" | jq -r .ref)"
+          ACTUAL_CHECKOUT_URI="$(cat "$PAYLOAD_FILE" | jq -r .checkout_uri)"
+
+          if [[ "$EXPECTED_COMMIT_OID" != "$ACTUAL_COMMIT_OID" ]]; then
+            echo "::error Invalid commit oid. Expected: $EXPECTED_COMMIT_OID Actual: $ACTUAL_COMMIT_OID"
+            echo "$PAYLOAD_FILE"
+            exit 1
+          fi
+
+          if [[ "$EXPECTED_REF" != "$ACTUAL_REF" ]]; then
+            echo "::error Invalid ref. Expected: '$EXPECTED_REF' Actual: '$ACTUAL_REF'"
+            echo "$PAYLOAD_FILE"
+            exit 1
+          fi
+
+          if [[ "$ACTUAL_CHECKOUT_URI" != *$EXPECTED_CHECKOUT_URI_SUFFIX ]]; then
+            echo "::error Invalid checkout URI suffix. Expected suffix: $EXPECTED_CHECKOUT_URI_SUFFIX Actual uri: $ACTUAL_CHECKOUT_URI"
+            echo "$PAYLOAD_FILE"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/pr-checks.yml

@@ -1,11 +1,14 @@
 name: PR Checks
 
 on:
+  push:
+  pull_request:
+  merge_group:
+    types: [checks_requested]
   workflow_dispatch:
-  workflow_call:
 
 concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || github.event_name == 'workflow_call' }}
+  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
   group: ${{ github.workflow }}-${{ github.ref }}
 
 defaults:

CHANGELOG.md

@@ -2,101 +2,102 @@
 
 See the [releases page](https://github.com/github/codeql-action/releases) for the relevant changes to the CodeQL CLI and language packs.
 
-## [UNRELEASED]
+## 3.38.3 - 08 Oct 2026
 
 - _Upcoming breaking change_: CodeQL version 2.21.2 and earlier were discontinued on 24 September 2026 alongside GitHub Enterprise Server 3.17, and will be unsupported by the next minor release of the CodeQL Action. Added a deprecation warning for customers using these versions of CodeQL. [#4188](https://github.com/github/codeql-action/pull/4188)
 - Update default CodeQL bundle version to [2.27.2](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.27.2). [#4203](https://github.com/github/codeql-action/pull/4203)
+- Fixed a bug where the decision of whether to use a per-language bundle did not account for custom configurations that reference queries outside of compiled CodeQL packs. This issue was caught during internal testing and did not affect any customer repositories. We will resume the roll out of per-language bundles in the coming weeks. [#4184](https://github.com/github/codeql-action/pull/4184)
 
-## 4.38.2 - 24 Sept 2026
+## 3.38.2 - 24 Sept 2026
 
 - Update default CodeQL bundle version to [2.27.1](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.27.1). [#4160](https://github.com/github/codeql-action/pull/4160)
 
-## 4.38.1 - 18 Sept 2026
+## 3.38.1 - 18 Sept 2026
 
 - The CodeQL Action now has experimental support for CodeQL releases for which per-language bundles are available. Per-language bundles support analysis for a single language and are therefore smaller than the combined bundles that allow analysis for all supported languages. As a result, per-language bundles take up less space on disk and are faster to download. We expect to roll this change out to everyone in the coming weeks. [#4146](https://github.com/github/codeql-action/pull/4146)
 
-## 4.38.0 - 09 Sept 2026
+## 3.38.0 - 09 Sept 2026
 
 - On GitHub-hosted runners, the CodeQL Action now deletes unused CodeQL bundles from the toolcache before downloading a different bundle, which frees up disk space for the analysis. We expect to roll this change out to everyone in September. [#4124](https://github.com/github/codeql-action/pull/4124)
 - The CodeQL Action now supports CodeQL releases that are compatible with Linux Arm64 and downloads the native `linux-arm64` CodeQL bundle when available. [#4072](https://github.com/github/codeql-action/pull/4072)
 - Update default CodeQL bundle version to [2.27.0](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.27.0). [#4129](https://github.com/github/codeql-action/pull/4129)
 
-## 4.37.9 - 26 Aug 2026
+## 3.37.9 - 26 Aug 2026
 
 - Update default CodeQL bundle version to [2.26.4](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.26.4). [#4106](https://github.com/github/codeql-action/pull/4106)
 
-## 4.37.8 - 21 Aug 2026
+## 3.37.8 - 21 Aug 2026
 
 No user facing changes.
 
-## 4.37.7 - 13 Aug 2026
+## 3.37.7 - 13 Aug 2026
 
 - Update default CodeQL bundle version to [2.26.3](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.26.3). [#4085](https://github.com/github/codeql-action/pull/4085)
 
-## 4.37.6 - 04 Aug 2026
+## 3.37.6 - 04 Aug 2026
 
 - Changed the default filepath for the new remote file address format that was introduced in CodeQL Action 4.37.0 / 3.37.0 to `.github/codeql-config.yml` to align it with the suggested path that is used elsewhere. [#4070](https://github.com/github/codeql-action/pull/4070)
 
-## 4.37.5 - 03 Aug 2026
+## 3.37.5 - 03 Aug 2026
 
 - Fixed a bug where a network error while streaming the download of the CodeQL bundle could terminate the `init` Action instead of falling back to downloading the bundle before extracting it. [#4061](https://github.com/github/codeql-action/pull/4061)
 
-## 4.37.4 - 29 Jul 2026
+## 3.37.4 - 29 Jul 2026
 
 - This version of the CodeQL Action adds support for the `tools` input for the `codeql-action/init` step to be specified using a `github-codeql-tools` [repository property](https://docs.github.com/en/organizations/managing-organization-settings/managing-custom-properties-for-repositories-in-your-organization). This feature will gradually be rolled out following the release of this version. Once rolled out, this allows for the CodeQL CLI version that is used in GitHub-managed workflows, such as Default Setup, to be set to a custom value. For example, customers who run into issues with rate limits when a new CodeQL CLI version is released can set the value to `toolcache` to always use the CodeQL CLI version that is available in the runner toolcache. For Advanced Setup workflows, the value provided for `tools` in the workflow definition always takes precedence unless the value of the repository property starts with `!`. [#4037](https://github.com/github/codeql-action/pull/4037)
 - Update default CodeQL bundle version to [2.26.2](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.26.2). [#4051](https://github.com/github/codeql-action/pull/4051)
 
-## 4.37.3 - 22 Jul 2026
+## 3.37.3 - 22 Jul 2026
 
 No user facing changes.
 
-## 4.37.2 - 21 Jul 2026
+## 3.37.2 - 21 Jul 2026
 
 - The new address format for the `config-file` input that was introduced in CodeQL Action 4.37.0 is now enabled by default. In addition to the format described there, the `remote=` prefix can now be used to explicitly indicate that the input refers to a remote file. All previous input formats continue to be accepted as well. [#4023](https://github.com/github/codeql-action/pull/4023)
 - The CodeQL Action can now make use of [configured private registries](https://docs.github.com/en/code-security/how-tos/secure-at-scale/configure-organization-security/manage-usage-and-access/giving-org-access-private-registries) in Default Setup to retrieve CodeQL configuration files from remote repositories that require authentication. This will allow customers to store their CodeQL configuration in a single repository that can then be referenced by Default Setup workflows in other repositories. We expect to roll this and other, related changes out to everyone in July. [#4007](https://github.com/github/codeql-action/pull/4007)
 
-## 4.37.1 - 16 Jul 2026
+## 3.37.1 - 16 Jul 2026
 
 - _Upcoming breaking change_: Add a deprecation warning for customers using CodeQL version 2.20.6 and earlier. These versions of CodeQL were discontinued on 1 July 2026 alongside GitHub Enterprise Server 3.16, and will be unsupported by the next minor release of the CodeQL Action. [#3956](https://github.com/github/codeql-action/pull/3956)
 - Update default CodeQL bundle version to [2.26.1](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.26.1). [#4019](https://github.com/github/codeql-action/pull/4019)
 
-## 4.37.0 - 08 Jul 2026
+## 3.37.0 - 08 Jul 2026
 
 - Update default CodeQL bundle version to [2.26.0](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.26.0). [#3995](https://github.com/github/codeql-action/pull/3995)
 - In addition to the existing input format, the `config-file` input for the `codeql-action/init` step will soon support a new `[owner/]repo[@ref][:path]` format. All components except the repository name are optional. If omitted, `owner` defaults to the same owner as the repository the analysis is running for, `ref` to `main`, and `path` to `.github/codeql-action.yaml`. Support for this format ships in this version of the CodeQL Action, but will only be enabled over the coming weeks. [#3973](https://github.com/github/codeql-action/pull/3973)
 
-## 4.36.3 - 01 Jul 2026
+## 3.36.3 - 01 Jul 2026
 
 No user facing changes.
 
-## 4.36.2 - 04 Jun 2026
+## 3.36.2 - 04 Jun 2026
 
 - Cache CodeQL CLI version information across Actions steps. [#3943](https://github.com/github/codeql-action/pull/3943)
 - Reduce requests while waiting for analysis processing by using exponential backoff when polling SARIF processing status. [#3937](https://github.com/github/codeql-action/pull/3937)
 - Update default CodeQL bundle version to [2.25.6](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.25.6). [#3948](https://github.com/github/codeql-action/pull/3948)
 
-## 4.36.1 - 02 Jun 2026
+## 3.36.1 - 02 Jun 2026
 
 No user facing changes.
 
-## 4.36.0 - 22 May 2026
+## 3.36.0 - 22 May 2026
 
 - _Breaking change_: Bump the minimum required CodeQL bundle version to 2.19.4. [#3894](https://github.com/github/codeql-action/pull/3894)
 - Add support for SHA-256 Git object IDs. [#3893](https://github.com/github/codeql-action/pull/3893)
 - Update default CodeQL bundle version to [2.25.5](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.25.5). [#3926](https://github.com/github/codeql-action/pull/3926)
 
-## 4.35.5 - 15 May 2026
+## 3.35.5 - 15 May 2026
 
 - We have improved how the JavaScript bundles for the CodeQL Action are generated to avoid duplication across bundles and reduce the size of the repository by around 70%. This should have no effect on the runtime behaviour of the CodeQL Action. [#3899](https://github.com/github/codeql-action/pull/3899)
 - For performance and accuracy reasons, [improved incremental analysis](https://github.com/github/roadmap/issues/1158) will now only be enabled on a pull request when diff-informed analysis is also enabled for that run. If diff-informed analysis is unavailable (for example, because the PR diff ranges could not be computed), the action will fall back to a full analysis. [#3791](https://github.com/github/codeql-action/pull/3791)
 - If multiple inputs are provided for the GitHub-internal `analysis-kinds` input, only `code-scanning` will be enabled. The `analysis-kinds` input is experimental, for GitHub-internal use only, and may change without notice at any time. [#3892](https://github.com/github/codeql-action/pull/3892)
 - Added an experimental change which, when running a Code Scanning analysis for a PR with [improved incremental analysis](https://github.com/github/roadmap/issues/1158) enabled, prefers CodeQL CLI versions that have a cached overlay-base database for the configured languages. This speeds up analysis for a repository when there is not yet a cached overlay-base database for the latest CLI version. We expect to roll this change out to everyone in May. [#3880](https://github.com/github/codeql-action/pull/3880)
 
-## 4.35.4 - 07 May 2026
+## 3.35.4 - 07 May 2026
 
 - Update default CodeQL bundle version to [2.25.4](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.25.4). [#3881](https://github.com/github/codeql-action/pull/3881)
 
-## 4.35.3 - 01 May 2026
+## 3.35.3 - 01 May 2026
 
 - _Upcoming breaking change_: Add a deprecation warning for customers using CodeQL version 2.19.3 and earlier. These versions of CodeQL were discontinued on 9 April 2026 alongside GitHub Enterprise Server 3.15, and will be unsupported by the next minor release of the CodeQL Action. [#3837](https://github.com/github/codeql-action/pull/3837)
 - Configurations for private registries that use Cloudsmith or GCP OIDC are now accepted. [#3850](https://github.com/github/codeql-action/pull/3850)
@@ -104,7 +105,7 @@ No user facing changes.
 - Fixed a bug where two diagnostics produced within the same millisecond could overwrite each other on disk, causing one of them to be lost. [#3852](https://github.com/github/codeql-action/pull/3852)
 - Update default CodeQL bundle version to [2.25.3](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.25.3). [#3865](https://github.com/github/codeql-action/pull/3865)
 
-## 4.35.2 - 15 Apr 2026
+## 3.35.2 - 15 Apr 2026
 
 - The undocumented TRAP cache cleanup feature that could be enabled using the `CODEQL_ACTION_CLEANUP_TRAP_CACHES` environment variable is deprecated and will be removed in May 2026. If you are affected by this, we recommend disabling TRAP caching by passing the `trap-caching: false` input to the `init` Action. [#3795](https://github.com/github/codeql-action/pull/3795)
 - The Git version 2.36.0 requirement for improved incremental analysis now only applies to repositories that contain submodules. [#3789](https://github.com/github/codeql-action/pull/3789)
@@ -112,26 +113,26 @@ No user facing changes.
 - Fixed a bug in the validation of OIDC configurations for private registries that was added in CodeQL Action 4.33.0 / 3.33.0. [#3807](https://github.com/github/codeql-action/pull/3807)
 - Update default CodeQL bundle version to [2.25.2](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.25.2). [#3823](https://github.com/github/codeql-action/pull/3823)
 
-## 4.35.1 - 27 Mar 2026
+## 3.35.1 - 27 Mar 2026
 
 - Fix incorrect minimum required Git version for [improved incremental analysis](https://github.com/github/roadmap/issues/1158): it should have been 2.36.0, not 2.11.0. [#3781](https://github.com/github/codeql-action/pull/3781)
 
-## 4.35.0 - 27 Mar 2026
+## 3.35.0 - 27 Mar 2026
 
 - Reduced the minimum Git version required for [improved incremental analysis](https://github.com/github/roadmap/issues/1158) from 2.38.0 to 2.11.0. [#3767](https://github.com/github/codeql-action/pull/3767)
 - Update default CodeQL bundle version to [2.25.1](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.25.1). [#3773](https://github.com/github/codeql-action/pull/3773)
 
-## 4.34.1 - 20 Mar 2026
+## 3.34.1 - 20 Mar 2026
 
 - Downgrade default CodeQL bundle version to [2.24.3](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.24.3) due to issues with a small percentage of Actions and JavaScript analyses. [#3762](https://github.com/github/codeql-action/pull/3762)
 
-## 4.34.0 - 20 Mar 2026
+## 3.34.0 - 20 Mar 2026
 
 - Added an experimental change which disables TRAP caching when [improved incremental analysis](https://github.com/github/roadmap/issues/1158) is enabled, since improved incremental analysis supersedes TRAP caching. This will improve performance and reduce Actions cache usage. We expect to roll this change out to everyone in March. [#3569](https://github.com/github/codeql-action/pull/3569)
 - We are rolling out improved incremental analysis to C/C++ analyses that use build mode `none`. We expect this rollout to be complete by the end of April 2026. [#3584](https://github.com/github/codeql-action/pull/3584)
 - Update default CodeQL bundle version to [2.25.0](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.25.0). [#3585](https://github.com/github/codeql-action/pull/3585)
 
-## 4.33.0 - 16 Mar 2026
+## 3.33.0 - 16 Mar 2026
 
 - Upcoming change: Starting April 2026, the CodeQL Action will skip collecting file coverage information on pull requests to improve analysis performance. File coverage information will still be computed on non-PR analyses. Pull request analyses will log a warning about this upcoming change. [#3562](https://github.com/github/codeql-action/pull/3562)
 
@@ -145,11 +146,11 @@ No user facing changes.
 - Fixed the retry mechanism for database uploads. Previously this would fail with the error "Response body object should not be disturbed or locked". [#3564](https://github.com/github/codeql-action/pull/3564)
 - A warning is now emitted if the CodeQL Action detects a repository property whose name suggests that it relates to the CodeQL Action, but which is not one of the properties recognised by the current version of the CodeQL Action. [#3570](https://github.com/github/codeql-action/pull/3570)
 
-## 4.32.6 - 05 Mar 2026
+## 3.32.6 - 05 Mar 2026
 
 - Update default CodeQL bundle version to [2.24.3](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.24.3). [#3548](https://github.com/github/codeql-action/pull/3548)
 
-## 4.32.5 - 02 Mar 2026
+## 3.32.5 - 02 Mar 2026
 
 - Repositories owned by an organization can now set up the `github-codeql-disable-overlay` custom repository property to disable [improved incremental analysis for CodeQL](https://github.com/github/roadmap/issues/1158). First, create a custom repository property with the name `github-codeql-disable-overlay` and the type "True/false" in the organization's settings. Then in the repository's settings, set this property to `true` to disable improved incremental analysis. For more information, see [Managing custom properties for repositories in your organization](https://docs.github.com/en/organizations/managing-organization-settings/managing-custom-properties-for-repositories-in-your-organization). This feature is not yet available on GitHub Enterprise Server. [#3507](https://github.com/github/codeql-action/pull/3507)
 - Added an experimental change so that when [improved incremental analysis](https://github.com/github/roadmap/issues/1158) fails on a runner — potentially due to insufficient disk space — the failure is recorded in the Actions cache so that subsequent runs will automatically skip improved incremental analysis until something changes (e.g. a larger runner is provisioned or a new CodeQL version is released). We expect to roll this change out to everyone in March. [#3487](https://github.com/github/codeql-action/pull/3487)
@@ -159,7 +160,7 @@ No user facing changes.
 - Added an experimental change which allows the `start-proxy` action to resolve the CodeQL CLI version from feature flags instead of using the linked CLI bundle version. We expect to roll this change out to everyone in March. [#3512](https://github.com/github/codeql-action/pull/3512)
 - The previously experimental changes from versions 4.32.3, 4.32.4, 3.32.3 and 3.32.4 are now enabled by default. [#3503](https://github.com/github/codeql-action/pull/3503), [#3504](https://github.com/github/codeql-action/pull/3504)
 
-## 4.32.4 - 20 Feb 2026
+## 3.32.4 - 20 Feb 2026
 
 - Update default CodeQL bundle version to [2.24.2](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.24.2). [#3493](https://github.com/github/codeql-action/pull/3493)
 - Added an experimental change which improves how certificates are generated for the authentication proxy that is used by the CodeQL Action in Default Setup when [private package registries are configured](https://docs.github.com/en/code-security/how-tos/secure-at-scale/configure-organization-security/manage-usage-and-access/giving-org-access-private-registries). This is expected to generate more widely compatible certificates and should have no impact on analyses which are working correctly already. We expect to roll this change out to everyone in February. [#3473](https://github.com/github/codeql-action/pull/3473)
@@ -167,89 +168,89 @@ No user facing changes.
 - Added a setting which allows the CodeQL Action to enable network debugging for Java programs. This will help GitHub staff support customers with troubleshooting issues in GitHub-managed CodeQL workflows, such as Default Setup. This setting can only be enabled by GitHub staff. [#3485](https://github.com/github/codeql-action/pull/3485)
 - Added a setting which enables GitHub-managed workflows, such as Default Setup, to use a [nightly CodeQL CLI release](https://github.com/dsp-testing/codeql-cli-nightlies) instead of the latest, stable release that is used by default. This will help GitHub staff support customers whose analyses for a given repository or organization require early access to a change in an upcoming CodeQL CLI release. This setting can only be enabled by GitHub staff. [#3484](https://github.com/github/codeql-action/pull/3484)
 
-## 4.32.3 - 13 Feb 2026
+## 3.32.3 - 13 Feb 2026
 
 - Added experimental support for testing connections to [private package registries](https://docs.github.com/en/code-security/how-tos/secure-at-scale/configure-organization-security/manage-usage-and-access/giving-org-access-private-registries). This feature is not currently enabled for any analysis. In the future, it may be enabled by default for Default Setup. [#3466](https://github.com/github/codeql-action/pull/3466)
 
-## 4.32.2 - 05 Feb 2026
+## 3.32.2 - 05 Feb 2026
 
 - Update default CodeQL bundle version to [2.24.1](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.24.1). [#3460](https://github.com/github/codeql-action/pull/3460)
 
-## 4.32.1 - 02 Feb 2026
+## 3.32.1 - 02 Feb 2026
 
 - A warning is now shown in Default Setup workflow logs if a [private package registry is configured](https://docs.github.com/en/code-security/how-tos/secure-at-scale/configure-organization-security/manage-usage-and-access/giving-org-access-private-registries) using a GitHub Personal Access Token (PAT), but no username is configured. [#3422](https://github.com/github/codeql-action/pull/3422)
 - Fixed a bug which caused the CodeQL Action to fail when repository properties cannot successfully be retrieved. [#3421](https://github.com/github/codeql-action/pull/3421)
 
-## 4.32.0 - 26 Jan 2026
+## 3.32.0 - 26 Jan 2026
 
 - Update default CodeQL bundle version to [2.24.0](https://github.com/github/codeql-action/releases/tag/codeql-bundle-v2.24.0). [#3425](https://github.com/github/codeql-action/pull/3425)
 
-## 4.31.11 - 23 Jan 2026
+## 3.31.11 - 23 Jan 2026
 
 - When running a Default Setup workflow with [Actions debugging enabled](https://docs.github.com/en/actions/how-tos/monitor-workflows/enable-debug-logging), the CodeQL Action will now use more unique names when uploading logs from the Dependabot authentication proxy as workflow artifacts. This ensures that the artifact names do not clash between multiple jobs in a build matrix. [#3409](https://github.com/github/codeql-action/pull/3409)
 - Improved error handling throughout the CodeQL Action. [#3415](https://github.com/github/codeql-action/pull/3415)
 - Added experimental support for automatically excluding [generated files](https://docs.github.com/en/repositories/working-with-files/managing-files/customizing-how-changed-files-appear-on-github) from the analysis. This feature is not currently enabled for any analysis. In the future, it may be enabled by default for some GitHub-managed analyses. [#3318](https://github.com/github/codeql-action/pull/3318)
 - The changelog extracts that are included with releases of the CodeQL Action are now shorter to avoid duplicated information from appearing in Dependabot PRs. [#3403](https://github.com/github/codeql-action/pull/3403)
 
-## 4.31.10 - 12 Jan 2026
+## 3.31.10 - 12 Jan 2026
 
 - Update default CodeQL bundle version to 2.23.9. [#3393](https://github.com/github/codeql-action/pull/3393)
 
-## 4.31.9 - 16 Dec 2025
+## 3.31.9 - 16 Dec 2025
 
 No user facing changes.
 
-## 4.31.8 - 11 Dec 2025
+## 3.31.8 - 11 Dec 2025
 
 - Update default CodeQL bundle version to 2.23.8. [#3354](https://github.com/github/codeql-action/pull/3354)
 
-## 4.31.7 - 05 Dec 2025
+## 3.31.7 - 05 Dec 2025
 
 - Update default CodeQL bundle version to 2.23.7. [#3343](https://github.com/github/codeql-action/pull/3343)
 
-## 4.31.6 - 01 Dec 2025
+## 3.31.6 - 01 Dec 2025
 
 No user facing changes.
 
-## 4.31.5 - 24 Nov 2025
+## 3.31.5 - 24 Nov 2025
 
 - Update default CodeQL bundle version to 2.23.6. [#3321](https://github.com/github/codeql-action/pull/3321)
 
-## 4.31.4 - 18 Nov 2025
+## 3.31.4 - 18 Nov 2025
 
 No user facing changes.
 
-## 4.31.3 - 13 Nov 2025
+## 3.31.3 - 13 Nov 2025
 
 - CodeQL Action v3 will be deprecated in December 2026.  The Action now logs a warning for customers who are running v3 but could be running v4. For more information, see [Upcoming deprecation of CodeQL Action v3](https://github.blog/changelog/2025-10-28-upcoming-deprecation-of-codeql-action-v3/).
 - Update default CodeQL bundle version to 2.23.5. [#3288](https://github.com/github/codeql-action/pull/3288)
 
-## 4.31.2 - 30 Oct 2025
+## 3.31.2 - 30 Oct 2025
 
 No user facing changes.
 
-## 4.31.1 - 30 Oct 2025
+## 3.31.1 - 30 Oct 2025
 
 - The `add-snippets` input has been removed from the `analyze` action. This input has been deprecated since CodeQL Action 3.26.4 in August 2024 when this removal was announced.
 
-## 4.31.0 - 24 Oct 2025
+## 3.31.0 - 24 Oct 2025
 
 - Bump minimum CodeQL bundle version to 2.17.6. [#3223](https://github.com/github/codeql-action/pull/3223)
 - When SARIF files are uploaded by the `analyze` or `upload-sarif` actions, the CodeQL Action automatically performs post-processing steps to prepare the data for the upload. Previously, these post-processing steps were only performed before an upload took place. We are now changing this so that the post-processing steps will always be performed, even when the SARIF files are not uploaded. This does not change anything for the `upload-sarif` action. For `analyze`, this may affect Advanced Setup for CodeQL users who specify a value other than `always` for the `upload` input. [#3222](https://github.com/github/codeql-action/pull/3222)
 
-## 4.30.9 - 17 Oct 2025
+## 3.30.9 - 17 Oct 2025
 
 - Update default CodeQL bundle version to 2.23.3. [#3205](https://github.com/github/codeql-action/pull/3205)
 - Experimental: A new `setup-codeql` action has been added which is similar to `init`, except it only installs the CodeQL CLI and does not initialize a database. Do not use this in production as it is part of an internal experiment and subject to change at any time. [#3204](https://github.com/github/codeql-action/pull/3204)
 
-## 4.30.8 - 10 Oct 2025
+## 3.30.8 - 10 Oct 2025
 
 No user facing changes.
 
-## 4.30.7 - 06 Oct 2025
+## 3.30.7 - 06 Oct 2025
 
-- [v4+ only] The CodeQL Action now runs on Node.js v24. [#3169](https://github.com/github/codeql-action/pull/3169)
 
+No user facing changes.
 ## 3.30.6 - 02 Oct 2025
 
 - Update default CodeQL bundle version to 2.23.2. [#3168](https://github.com/github/codeql-action/pull/3168)

analyze/action.yml

@@ -94,6 +94,6 @@ outputs:
   sarif-id:
     description: The ID of the uploaded SARIF file.
 runs:
-  using: node24
+  using: node20
   main: "../lib/analyze-entry.js"
   post: "../lib/analyze-post-entry.js"

autobuild/action.yml

@@ -15,5 +15,5 @@ inputs:
       $GITHUB_WORKSPACE as its working directory.
     required: false
 runs:
-  using: node24
+  using: node20
   main: '../lib/autobuild-entry.js'

init/action.yml

@@ -177,6 +177,6 @@ outputs:
   codeql-version:
     description: The version of the CodeQL binary used for analysis
 runs:
-  using: node24
+  using: node20
   main: '../lib/init-entry.js'
   post: '../lib/init-post-entry.js'

lib/entry-points.js

@@ -170143,7 +170143,7 @@ function getDiffRangesJsonFilePath(env = getEnv()) {
   return path2.join(getTemporaryDirectory(env), PR_DIFF_RANGE_JSON_FILENAME);
 }
 function getActionVersion() {
-  return "4.38.3";
+  return "3.38.3";
 }
 function getWorkflowEventName(env = getEnv()) {
   return env.getRequired("GITHUB_EVENT_NAME" /* GITHUB_EVENT_NAME */);

package.json

@@ -1,6 +1,6 @@
 {
   "name": "codeql",
-  "version": "4.38.3",
+  "version": "3.38.3",
   "private": true,
   "description": "CodeQL action",
   "scripts": {

pr-checks/checks/multi-language-autodetect.yml

@@ -20,13 +20,14 @@ env:
 installGo: true
 installDotNet: true
 steps:
-  - name: Install Python 3.13 for older CLI versions
-    # We need Python 3.13 for older CLI versions because they are not compatible with Python 3.14 or newer.
+  - name: Install Python 3.13.15 for older CLI versions
+    # Older CLI versions don't work with Python 3.13.16 or newer because their Python extractor
+    # imports `importlib._bootstrap._ERR_MSG`, which those Python versions no longer define.
     # See https://github.com/github/codeql-action/pull/3212
     if: matrix.version != 'nightly-latest' && matrix.version != 'linked'
     uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
     with:
-      python-version: "3.13"
+      python-version: "3.13.15"
 
   - name: Use Xcode 16
     # Only the older CodeQL CLI versions need Xcode 16, and these run on macOS 15.

pr-checks/sync.ts

@@ -571,7 +571,6 @@ function generateJob(
   specSteps.items.unshift(...steps);
 
   const checkJob: Record<string, any> = {
-    needs: ["pr-checks"],
     strategy: {
       "fail-fast": false,
       matrix: checkSpecification.matrix ?? {
@@ -699,35 +698,6 @@ function generateValidationJobs(
   };
 }
 
-/**
- * Constructs the body of a job that calls another workflow.
- *
- * @param jobName The friendly name of the job.
- * @param workflowBaseName The base name of the workflow file to call.
- * @param options Optional settings and overrides for the workflow call.
- * @param options.inputs Optionally, the inputs for the workflow.
- * @param options.permissions Permission overrides for the call.
- */
-function workflowCall(
-  jobName: string,
-  workflowBaseName: string,
-  options?: {
-    inputs?: Record<string, string>;
-    permissions?: Record<string, "read" | "write">;
-  },
-) {
-  return {
-    name: jobName,
-    permissions: {
-      contents: "read",
-      "security-events": "read",
-      ...options?.permissions,
-    },
-    uses: `./.github/workflows/${workflowBaseName}.yml`,
-    with: options?.inputs,
-  };
-}
-
 /**
  * Main entry point for the sync script.
  */
@@ -744,47 +714,6 @@ function main(): void {
 
   console.log(`Found ${checkFiles.length} check specification(s).`);
 
-  let allInputs: Record<string, WorkflowInput> = {};
-
-  const initialChecksJob = workflowCall("Initial checks", "pr-checks", {
-    permissions: { "security-events": "write", "pull-requests": "write" },
-  });
-
-  const cron = new yaml.Scalar("0 5 * * *");
-  cron.type = yaml.Scalar.QUOTE_SINGLE;
-
-  const checkWorkflow = {
-    name: `PR Checks`,
-    env: {
-      GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}",
-      GO111MODULE: "auto",
-    },
-    on: {
-      push: {
-        branches: ["main", "releases/v*"],
-      },
-      pull_request: {},
-      merge_group: {
-        types: ["checks_requested"],
-      },
-      schedule: [{ cron }],
-      workflow_dispatch: {
-        inputs: {},
-      },
-      workflow_call: {
-        inputs: {},
-      },
-    },
-    defaults: {
-      run: {
-        shell: "bash",
-      },
-    },
-    jobs: {
-      "pr-checks": initialChecksJob,
-    },
-  };
-
   const collections: Record<
     string,
     Array<{
@@ -824,31 +753,56 @@ function main(): void {
       });
     }
 
-    allInputs = { ...allInputs, ...combinedInputs };
-
-    checkWorkflow.jobs[checkName] = checkJob;
-
-    for (const [name, job] of Object.entries(validationJobs)) {
-      checkWorkflow.jobs[name] = job;
+    let extraGroupName = "";
+    for (const inputName of Object.keys(combinedInputs)) {
+      extraGroupName += `-\${{inputs.${inputName}}}`;
     }
+
+    const cron = new yaml.Scalar("0 5 * * *");
+    cron.type = yaml.Scalar.QUOTE_SINGLE;
+
+    const workflow = {
+      name: `PR Check - ${checkSpecification.name}`,
+      env: {
+        GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}",
+        GO111MODULE: "auto",
+      },
+      on: {
+        push: {
+          branches: ["main", "releases/v*"],
+        },
+        pull_request: {},
+        merge_group: {
+          types: ["checks_requested"],
+        },
+        schedule: [{ cron }],
+        workflow_dispatch: {
+          inputs: combinedInputs,
+        },
+        workflow_call: {
+          inputs: combinedInputs,
+        },
+      },
+      defaults: {
+        run: {
+          shell: "bash",
+        },
+      },
+      concurrency: {
+        "cancel-in-progress":
+          "${{ github.event_name == 'pull_request' || false }}",
+        group: `${checkName}-\${{github.ref}}${extraGroupName}`,
+      },
+      jobs: {
+        [checkName]: checkJob,
+        ...validationJobs,
+      },
+    };
+
+    const outputPath = path.join(OUTPUT_DIR, `__${checkName}.yml`);
+    writeYaml(outputPath, workflow);
   }
 
-  let extraGroupName = "";
-  for (const inputName of Object.keys(allInputs)) {
-    extraGroupName += `-\${{inputs.${inputName}}}`;
-  }
-
-  checkWorkflow["concurrency"] = {
-    "cancel-in-progress": "${{ github.event_name == 'pull_request' || false }}",
-    group: `pr-\${{github.ref}}${extraGroupName}`,
-  };
-
-  checkWorkflow.on.workflow_call.inputs = allInputs;
-  checkWorkflow.on.workflow_dispatch.inputs = allInputs;
-
-  const mainOutputPath = path.join(OUTPUT_DIR, `__pr.yml`);
-  writeYaml(mainOutputPath, checkWorkflow);
-
   // Write workflow files for collections.
   for (const collectionName of Object.keys(collections)) {
     const jobs: Record<string, any> = {};
@@ -864,9 +818,15 @@ function main(): void {
         checkWith[inputName] = `\${{ inputs.${inputName} }}`;
       }
 
-      jobs[checkName] = workflowCall(specification.name, `__${checkName}`, {
-        inputs: checkWith,
-      });
+      jobs[checkName] = {
+        name: specification.name,
+        permissions: {
+          contents: "read",
+          "security-events": "read",
+        },
+        uses: `./.github/workflows/__${checkName}.yml`,
+        with: checkWith,
+      };
     }
 
     const collectionWorkflow = {
@@ -888,10 +848,8 @@ function main(): void {
   }
 
   console.log(
-    `\nDone. Generated ${checkFiles.length} check(s) to ${OUTPUT_DIR}`,
+    `\nDone. Wrote ${checkFiles.length} workflow file(s) to ${OUTPUT_DIR}`,
   );
 }
 
-if (import.meta.main) {
-  main();
-}
+main();

resolve-environment/action.yml

@@ -21,5 +21,5 @@ outputs:
   environment:
     description: The inferred build environment configuration.
 runs:
-  using: node24
+  using: node20
   main: '../lib/resolve-environment-entry.js'

setup-codeql/action.yml

@@ -51,5 +51,5 @@ outputs:
   codeql-version:
     description: The version of the CodeQL binary that was installed.
 runs:
-  using: node24
+  using: node20
   main: '../lib/setup-codeql-entry.js'

start-proxy/action.yml

@@ -29,6 +29,6 @@ outputs:
   proxy_urls:
     description: A stringified JSON array of objects containing the types and URLs of the configured registries.
 runs:
-  using: node24
+  using: node20
   main: "../lib/start-proxy-entry.js"
   post: "../lib/start-proxy-post-entry.js"

upload-sarif/action.yml

@@ -41,6 +41,6 @@ outputs:
 
       { "code-scanning": "some-id", "code-quality": "some-other-id" }
 runs:
-  using: node24
+  using: node20
   main: '../lib/upload-sarif-entry.js'
   post: '../lib/upload-sarif-post-entry.js'